diff --git a/.changeset/wise-rams-glide.md b/.changeset/wise-rams-glide.md
new file mode 100644
index 000000000..60d45085d
--- /dev/null
+++ b/.changeset/wise-rams-glide.md
@@ -0,0 +1,5 @@
+---
+type: Fixed
+pr: 2973
+---
+**Agent-skills warnings now suggest the `global:` prefix when a bare name matches a global skill** — configuring a skill by bare name (e.g. `patch-coverage-check`) that exists as a global skill was silently skipped with no hint that the fix is `global:patch-coverage-check`. The skip warning now appends a hint when the bare name matches an existing global skill. (#2941)
diff --git a/src/init.cts b/src/init.cts
index 9d1d14aa7..3778e6c40 100644
--- a/src/init.cts
+++ b/src/init.cts
@@ -2201,8 +2201,21 @@ function buildAgentSkillsBlock(
 
     const skillMdPath = path.join(projectRoot, skillPath, 'SKILL.md');
     if (!fs.existsSync(skillMdPath)) {
+      // #2941: if the bare name matches a global skill, hint at the global: prefix.
+      // The bare name resolves as project-relative (which doesn't exist), but the
+      // user likely meant to reference a global skill. getGlobalSkillDir is already
+      // imported for the global: branch above; guard on globalSkillsBase being non-null
+      // since runtimes without a skills directory don't support the prefix.
+      let hint = '';
+      if (globalSkillsBase !== null) {
+        const baseName = path.basename(skillPath);
+        const globalDir = getGlobalSkillDir(runtime, baseName) as string;
+        if (globalDir && fs.existsSync(path.join(globalDir, 'SKILL.md'))) {
+          hint = ` — a global skill named "${baseName}" exists; use "global:${baseName}" to reference it`;
+        }
+      }
       warn(
-        `[agent-skills] WARNING: Skill not found at "${skillPath}/SKILL.md" — skipping\n`,
+        `[agent-skills] WARNING: Skill not found at "${skillPath}/SKILL.md"${hint} — skipping\n`,
       );
       continue;
     }
diff --git a/tests/agent-skills.test.cjs b/tests/agent-skills.test.cjs
index 27ac96d82..f1c4ea679 100644
--- a/tests/agent-skills.test.cjs
+++ b/tests/agent-skills.test.cjs
@@ -558,6 +558,49 @@ describe('agent-skills global: prefix', () => {
     assert.strictEqual(r.ir.block, '', 'block must be empty when skill is missing');
   });
 
+  // ─── #2941: bare skill name matching a global skill must hint at global: prefix ──
+
+  test('#2941 — bare name matching a global skill hints at the global: prefix', () => {
+    // Create a global skill so it exists on disk under ~/.claude/skills/
+    createGlobalSkill('patch-coverage-check');
+    // Reference it by BARE name (no global: prefix) — this resolves as
+    // project-relative, which doesn't exist, so it's skipped. The warning
+    // must hint that the name matches a global skill.
+    writeConfig(tmpDir, {
+      agent_skills: { 'gsd-executor': ['patch-coverage-check'] },
+    });
+
+    const r = runAgentSkillsJson(
+      ['agent-skills', 'gsd-executor'], tmpDir, { HOME: fakeHome, USERPROFILE: fakeHome }
+    );
+    assert.ok(r.success, `Command failed: ${r.error}`);
+    assert.strictEqual(r.ir.block, '', 'block must be empty — bare name does not resolve as project-relative');
+    assert.ok(Array.isArray(r.ir.warnings), 'IR must include warnings');
+    const hintWarning = r.ir.warnings.find((w) => /patch-coverage-check/.test(w) && /global:/.test(w));
+    assert.ok(hintWarning,
+      `warning must hint at the global: prefix when a bare name matches a global skill, got: ${JSON.stringify(r.ir.warnings)}`);
+  });
+
+  test('#2941 — bare name with NO global match keeps the original warning (no false hint)', () => {
+    // No global skill of this name exists. The warning must be the original
+    // "Skill not found" message without a global: hint.
+    writeConfig(tmpDir, {
+      agent_skills: { 'gsd-executor': ['totally-nonexistent-skill'] },
+    });
+
+    const r = runAgentSkillsJson(
+      ['agent-skills', 'gsd-executor'], tmpDir, { HOME: fakeHome, USERPROFILE: fakeHome }
+    );
+    assert.ok(r.success, `Command failed: ${r.error}`);
+    assert.strictEqual(r.ir.block, '', 'block must be empty');
+    assert.ok(Array.isArray(r.ir.warnings), 'IR must include warnings');
+    const notFoundWarning = r.ir.warnings.find((w) => /Skill not found/.test(w) && /totally-nonexistent-skill/.test(w));
+    assert.ok(notFoundWarning, `must have the standard "not found" warning, got: ${JSON.stringify(r.ir.warnings)}`);
+    // Must NOT contain a global: hint — there is no global skill of this name.
+    assert.ok(!notFoundWarning.includes('global:'),
+      `warning must not hint at global: when no global skill matches, got: ${notFoundWarning}`);
+  });
+
   test('mix of global: and project-relative paths both resolve correctly', () => {
     createGlobalSkill('shadcn');