fix(2137): skip worktree isolation when .gitmodules detected (#2144)

* feat(sdk): add typed query foundation and gsd-sdk query (Phase 1) Add sdk/src/query registry and handlers with tests, GSDQueryError, CLI query wiring, and supporting type/tool-scoping hooks. Update CHANGELOG. Vitest 4 constructor mock fixes in milestone-runner tests. Made-with: Cursor * fix(2137): skip worktree isolation when .gitmodules detected When a project contains git submodules, worktree isolation cannot correctly handle submodule commits — three separate gaps exist in worktree setup, executor commit protocol, and merge-back. Rather than patch each gap individually, detect .gitmodules at phase start and fall back to sequential execution, which handles submodules transparently (Option B). Affected workflows: execute-phase.md, quick.md --------- Co-authored-by: David Sienkowski <dave@sienkowski.com>
2026-04-12 08:33:04 -04:00
parent 58632e0718
commit 002bcf2a8a
63 changed files with 17872 additions and 23 deletions
--- a/sdk/src/query/init.ts
+++ b/sdk/src/query/init.ts
@@ -0,0 +1,956 @@
+/**
+ * Init composition handlers — compound init commands for workflow bootstrapping.
+ *
+ * Composes existing atomic SDK queries into the same flat JSON bundles
+ * that CJS init.cjs produces, enabling workflow migration. Each handler
+ * follows the QueryHandler signature and returns { data: <flat JSON> }.
+ *
+ * Port of get-shit-done/bin/lib/init.cjs (13 of 16 handlers).
+ * The 3 complex handlers (new-project, progress, manager) are in init-complex.ts.
+ *
+ * @example
+ * ```typescript
+ * import { initExecutePhase, withProjectRoot } from './init.js';
+ *
+ * const result = await initExecutePhase(['9'], '/project');
+ * // { data: { executor_model: 'opus', phase_found: true, ... } }
+ * ```
+ */
+
+import { existsSync, readdirSync, readFileSync, statSync } from 'node:fs';
+import { readFile, readdir } from 'node:fs/promises';
+import { join, relative, basename } from 'node:path';
+import { execSync } from 'node:child_process';
+import { homedir } from 'node:os';
+
+import { loadConfig } from '../config.js';
+import { resolveModel, MODEL_PROFILES } from './config-query.js';
+import { findPhase } from './phase.js';
+import { roadmapGetPhase, getMilestoneInfo } from './roadmap.js';
+import { planningPaths, normalizePhaseName, toPosixPath } from './helpers.js';
+import type { QueryHandler } from './utils.js';
+
+// ─── Internal helpers ──────────────────────────────────────────────────────
+
+/**
+ * Extract model alias string from a resolveModel result.
+ */
+async function getModelAlias(agentType: string, projectDir: string): Promise<string> {
+  const result = await resolveModel([agentType], projectDir);
+  const data = result.data as Record<string, unknown>;
+  return (data.model as string) || 'sonnet';
+}
+
+/**
+ * Generate a slug from text (inline, matches CJS generateSlugInternal).
+ */
+function generateSlugInternal(text: string): string {
+  return text
+    .toLowerCase()
+    .replace(/[^a-z0-9]+/g, '-')
+    .replace(/^-+|-+$/g, '')
+    .substring(0, 60);
+}
+
+/**
+ * Check if a path exists on disk.
+ */
+function pathExists(base: string, relPath: string): boolean {
+  return existsSync(join(base, relPath));
+}
+
+/**
+ * Get the latest completed milestone from MILESTONES.md.
+ * Port of getLatestCompletedMilestone from init.cjs lines 10-25.
+ */
+function getLatestCompletedMilestone(projectDir: string): { version: string; name: string } | null {
+  const milestonesPath = join(projectDir, '.planning', 'MILESTONES.md');
+  if (!existsSync(milestonesPath)) return null;
+
+  try {
+    const content = readFileSync(milestonesPath, 'utf-8');
+    const match = content.match(/^##\s+(v[\d.]+)\s+(.+?)\s+\(Shipped:/m);
+    if (!match) return null;
+    return { version: match[1], name: match[2].trim() };
+  } catch {
+    return null;
+  }
+}
+
+/**
+ * Check which GSD agents are installed on disk.
+ * Port of checkAgentsInstalled from core.cjs lines 1274-1306.
+ */
+function checkAgentsInstalled(): { agents_installed: boolean; missing_agents: string[] } {
+  const agentsDir = process.env.GSD_AGENTS_DIR
+    || join(homedir(), '.claude', 'get-shit-done', 'agents');
+  const expectedAgents = Object.keys(MODEL_PROFILES);
+
+  if (!existsSync(agentsDir)) {
+    return { agents_installed: false, missing_agents: expectedAgents };
+  }
+
+  const missing: string[] = [];
+  for (const agent of expectedAgents) {
+    const agentFile = join(agentsDir, `${agent}.md`);
+    const agentFileCopilot = join(agentsDir, `${agent}.agent.md`);
+    if (!existsSync(agentFile) && !existsSync(agentFileCopilot)) {
+      missing.push(agent);
+    }
+  }
+
+  return {
+    agents_installed: missing.length === 0,
+    missing_agents: missing,
+  };
+}
+
+/**
+ * Extract phase info from findPhase result, or build fallback from roadmap.
+ */
+async function getPhaseInfoWithFallback(
+  phase: string,
+  projectDir: string,
+): Promise<{ phaseInfo: Record<string, unknown> | null; roadmapPhase: Record<string, unknown> | null }> {
+  const phaseResult = await findPhase([phase], projectDir);
+  let phaseInfo = phaseResult.data as Record<string, unknown> | null;
+
+  const roadmapResult = await roadmapGetPhase([phase], projectDir);
+  const roadmapPhase = roadmapResult.data as Record<string, unknown> | null;
+
+  // Fallback to ROADMAP.md if no phase directory exists yet
+  if ((!phaseInfo || !phaseInfo.found) && roadmapPhase?.found) {
+    const phaseName = roadmapPhase.phase_name as string;
+    phaseInfo = {
+      found: true,
+      directory: null,
+      phase_number: roadmapPhase.phase_number,
+      phase_name: phaseName,
+      phase_slug: phaseName ? generateSlugInternal(phaseName) : null,
+      plans: [],
+      summaries: [],
+      incomplete_plans: [],
+      has_research: false,
+      has_context: false,
+      has_verification: false,
+      has_reviews: false,
+    };
+  }
+
+  return { phaseInfo, roadmapPhase };
+}
+
+/**
+ * Extract requirement IDs from roadmap section text.
+ */
+function extractReqIds(roadmapPhase: Record<string, unknown> | null): string | null {
+  const section = roadmapPhase?.section as string | undefined;
+  const reqMatch = section?.match(/^\*\*Requirements\*\*:[^\S\n]*([^\n]*)$/m);
+  const reqExtracted = reqMatch
+    ? reqMatch[1].replace(/[\[\]]/g, '').split(',').map((s: string) => s.trim()).filter(Boolean).join(', ')
+    : null;
+  return (reqExtracted && reqExtracted !== 'TBD') ? reqExtracted : null;
+}
+
+// ─── withProjectRoot ─────────────────────────────────────────────────────
+
+/**
+ * Inject project_root, agents_installed, missing_agents, and response_language
+ * into an init result object.
+ *
+ * Port of withProjectRoot from init.cjs lines 32-48.
+ *
+ * @param projectDir - Absolute project root path
+ * @param result - The result object to augment
+ * @param config - Optional loaded config (avoids re-reading config.json)
+ * @returns The augmented result object
+ */
+export function withProjectRoot(
+  projectDir: string,
+  result: Record<string, unknown>,
+  config?: Record<string, unknown>,
+): Record<string, unknown> {
+  result.project_root = projectDir;
+
+  const agentStatus = checkAgentsInstalled();
+  result.agents_installed = agentStatus.agents_installed;
+  result.missing_agents = agentStatus.missing_agents;
+
+  const responseLang = config?.response_language;
+  if (responseLang) {
+    result.response_language = responseLang;
+  }
+
+  return result;
+}
+
+// ─── initExecutePhase ─────────────────────────────────────────────────────
+
+/**
+ * Init handler for execute-phase workflow.
+ * Port of cmdInitExecutePhase from init.cjs lines 50-171.
+ */
+export const initExecutePhase: QueryHandler = async (args, projectDir) => {
+  const phase = args[0];
+  if (!phase) {
+    return { data: { error: 'phase required for init execute-phase' } };
+  }
+
+  const config = await loadConfig(projectDir);
+  const planningDir = join(projectDir, '.planning');
+
+  const { phaseInfo, roadmapPhase } = await getPhaseInfoWithFallback(phase, projectDir);
+  const phase_req_ids = extractReqIds(roadmapPhase);
+
+  const [executorModel, verifierModel] = await Promise.all([
+    getModelAlias('gsd-executor', projectDir),
+    getModelAlias('gsd-verifier', projectDir),
+  ]);
+
+  const milestone = await getMilestoneInfo(projectDir);
+
+  const phaseFound = !!(phaseInfo && phaseInfo.found);
+  const phaseNumber = (phaseInfo?.phase_number as string) || null;
+  const phaseSlug = (phaseInfo?.phase_slug as string) || null;
+  const plans = (phaseInfo?.plans || []) as string[];
+  const summaries = (phaseInfo?.summaries || []) as string[];
+  const incompletePlans = (phaseInfo?.incomplete_plans || []) as string[];
+  const projectCode = (config as Record<string, unknown>).project_code as string || '';
+
+  const result: Record<string, unknown> = {
+    executor_model: executorModel,
+    verifier_model: verifierModel,
+    commit_docs: config.commit_docs,
+    sub_repos: (config as Record<string, unknown>).sub_repos ?? [],
+    parallelization: config.parallelization,
+    context_window: (config as Record<string, unknown>).context_window ?? 200000,
+    branching_strategy: config.git.branching_strategy,
+    phase_branch_template: config.git.phase_branch_template,
+    milestone_branch_template: config.git.milestone_branch_template,
+    verifier_enabled: config.workflow.verifier,
+    phase_found: phaseFound,
+    phase_dir: (phaseInfo?.directory as string) ?? null,
+    phase_number: phaseNumber,
+    phase_name: (phaseInfo?.phase_name as string) ?? null,
+    phase_slug: phaseSlug,
+    phase_req_ids,
+    plans,
+    summaries,
+    incomplete_plans: incompletePlans,
+    plan_count: plans.length,
+    incomplete_count: incompletePlans.length,
+    branch_name: config.git.branching_strategy === 'phase' && phaseInfo
+      ? config.git.phase_branch_template
+          .replace('{project}', projectCode)
+          .replace('{phase}', phaseNumber || '')
+          .replace('{slug}', phaseSlug || 'phase')
+      : config.git.branching_strategy === 'milestone'
+        ? config.git.milestone_branch_template
+            .replace('{milestone}', milestone.version)
+            .replace('{slug}', generateSlugInternal(milestone.name) || 'milestone')
+        : null,
+    milestone_version: milestone.version,
+    milestone_name: milestone.name,
+    milestone_slug: generateSlugInternal(milestone.name),
+    state_exists: existsSync(join(planningDir, 'STATE.md')),
+    roadmap_exists: existsSync(join(planningDir, 'ROADMAP.md')),
+    config_exists: existsSync(join(planningDir, 'config.json')),
+    state_path: toPosixPath(relative(projectDir, join(planningDir, 'STATE.md'))),
+    roadmap_path: toPosixPath(relative(projectDir, join(planningDir, 'ROADMAP.md'))),
+    config_path: toPosixPath(relative(projectDir, join(planningDir, 'config.json'))),
+  };
+
+  return { data: withProjectRoot(projectDir, result, config as Record<string, unknown>) };
+};
+
+// ─── initPlanPhase ────────────────────────────────────────────────────────
+
+/**
+ * Init handler for plan-phase workflow.
+ * Port of cmdInitPlanPhase from init.cjs lines 173-293.
+ */
+export const initPlanPhase: QueryHandler = async (args, projectDir) => {
+  const phase = args[0];
+  if (!phase) {
+    return { data: { error: 'phase required for init plan-phase' } };
+  }
+
+  const config = await loadConfig(projectDir);
+  const planningDir = join(projectDir, '.planning');
+
+  const { phaseInfo, roadmapPhase } = await getPhaseInfoWithFallback(phase, projectDir);
+  const phase_req_ids = extractReqIds(roadmapPhase);
+
+  const [researcherModel, plannerModel, checkerModel] = await Promise.all([
+    getModelAlias('gsd-phase-researcher', projectDir),
+    getModelAlias('gsd-planner', projectDir),
+    getModelAlias('gsd-plan-checker', projectDir),
+  ]);
+
+  const phaseFound = !!(phaseInfo && phaseInfo.found);
+  const phaseNumber = (phaseInfo?.phase_number as string) || null;
+  const plans = (phaseInfo?.plans || []) as string[];
+
+  const result: Record<string, unknown> = {
+    researcher_model: researcherModel,
+    planner_model: plannerModel,
+    checker_model: checkerModel,
+    research_enabled: config.workflow.research,
+    plan_checker_enabled: config.workflow.plan_check,
+    nyquist_validation_enabled: config.workflow.nyquist_validation,
+    commit_docs: config.commit_docs,
+    text_mode: config.workflow.text_mode,
+    phase_found: phaseFound,
+    phase_dir: (phaseInfo?.directory as string) ?? null,
+    phase_number: phaseNumber,
+    phase_name: (phaseInfo?.phase_name as string) ?? null,
+    phase_slug: (phaseInfo?.phase_slug as string) ?? null,
+    padded_phase: phaseNumber ? normalizePhaseName(phaseNumber) : null,
+    phase_req_ids,
+    has_research: (phaseInfo?.has_research as boolean) || false,
+    has_context: (phaseInfo?.has_context as boolean) || false,
+    has_reviews: (phaseInfo?.has_reviews as boolean) || false,
+    has_plans: plans.length > 0,
+    plan_count: plans.length,
+    planning_exists: existsSync(planningDir),
+    roadmap_exists: existsSync(join(planningDir, 'ROADMAP.md')),
+    state_path: toPosixPath(relative(projectDir, join(planningDir, 'STATE.md'))),
+    roadmap_path: toPosixPath(relative(projectDir, join(planningDir, 'ROADMAP.md'))),
+    requirements_path: toPosixPath(relative(projectDir, join(planningDir, 'REQUIREMENTS.md'))),
+  };
+
+  // Add artifact paths if phase directory exists
+  if (phaseInfo?.directory) {
+    const phaseDirFull = join(projectDir, phaseInfo.directory as string);
+    try {
+      const files = readdirSync(phaseDirFull);
+      const contextFile = files.find(f => f.endsWith('-CONTEXT.md') || f === 'CONTEXT.md');
+      if (contextFile) result.context_path = toPosixPath(join(phaseInfo.directory as string, contextFile));
+      const researchFile = files.find(f => f.endsWith('-RESEARCH.md') || f === 'RESEARCH.md');
+      if (researchFile) result.research_path = toPosixPath(join(phaseInfo.directory as string, researchFile));
+      const verificationFile = files.find(f => f.endsWith('-VERIFICATION.md') || f === 'VERIFICATION.md');
+      if (verificationFile) result.verification_path = toPosixPath(join(phaseInfo.directory as string, verificationFile));
+      const uatFile = files.find(f => f.endsWith('-UAT.md') || f === 'UAT.md');
+      if (uatFile) result.uat_path = toPosixPath(join(phaseInfo.directory as string, uatFile));
+      const reviewsFile = files.find(f => f.endsWith('-REVIEWS.md') || f === 'REVIEWS.md');
+      if (reviewsFile) result.reviews_path = toPosixPath(join(phaseInfo.directory as string, reviewsFile));
+    } catch { /* intentionally empty */ }
+  }
+
+  return { data: withProjectRoot(projectDir, result, config as Record<string, unknown>) };
+};
+
+// ─── initNewMilestone ─────────────────────────────────────────────────────
+
+/**
+ * Init handler for new-milestone workflow.
+ * Port of cmdInitNewMilestone from init.cjs lines 401-446.
+ */
+export const initNewMilestone: QueryHandler = async (_args, projectDir) => {
+  const config = await loadConfig(projectDir);
+  const planningDir = join(projectDir, '.planning');
+  const milestone = await getMilestoneInfo(projectDir);
+  const latestCompleted = getLatestCompletedMilestone(projectDir);
+
+  const phasesDir = join(planningDir, 'phases');
+  let phaseDirCount = 0;
+  try {
+    if (existsSync(phasesDir)) {
+      phaseDirCount = readdirSync(phasesDir, { withFileTypes: true })
+        .filter(entry => entry.isDirectory())
+        .length;
+    }
+  } catch { /* intentionally empty */ }
+
+  const [researcherModel, synthesizerModel, roadmapperModel] = await Promise.all([
+    getModelAlias('gsd-project-researcher', projectDir),
+    getModelAlias('gsd-research-synthesizer', projectDir),
+    getModelAlias('gsd-roadmapper', projectDir),
+  ]);
+
+  const result: Record<string, unknown> = {
+    researcher_model: researcherModel,
+    synthesizer_model: synthesizerModel,
+    roadmapper_model: roadmapperModel,
+    commit_docs: config.commit_docs,
+    research_enabled: config.workflow.research,
+    current_milestone: milestone.version,
+    current_milestone_name: milestone.name,
+    latest_completed_milestone: latestCompleted?.version || null,
+    latest_completed_milestone_name: latestCompleted?.name || null,
+    phase_dir_count: phaseDirCount,
+    phase_archive_path: latestCompleted
+      ? toPosixPath(relative(projectDir, join(projectDir, '.planning', 'milestones', `${latestCompleted.version}-phases`)))
+      : null,
+    project_exists: pathExists(projectDir, '.planning/PROJECT.md'),
+    roadmap_exists: existsSync(join(planningDir, 'ROADMAP.md')),
+    state_exists: existsSync(join(planningDir, 'STATE.md')),
+    project_path: '.planning/PROJECT.md',
+    roadmap_path: toPosixPath(relative(projectDir, join(planningDir, 'ROADMAP.md'))),
+    state_path: toPosixPath(relative(projectDir, join(planningDir, 'STATE.md'))),
+  };
+
+  return { data: withProjectRoot(projectDir, result, config as Record<string, unknown>) };
+};
+
+// ─── initQuick ────────────────────────────────────────────────────────────
+
+/**
+ * Init handler for quick workflow.
+ * Port of cmdInitQuick from init.cjs lines 448-504.
+ */
+export const initQuick: QueryHandler = async (args, projectDir) => {
+  const description = args[0] || null;
+  const config = await loadConfig(projectDir);
+  const planningDir = join(projectDir, '.planning');
+  const now = new Date();
+  const slug = description ? generateSlugInternal(description).substring(0, 40) : null;
+
+  // Generate collision-resistant quick task ID: YYMMDD-xxx
+  const yy = String(now.getFullYear()).slice(-2);
+  const mm = String(now.getMonth() + 1).padStart(2, '0');
+  const dd = String(now.getDate()).padStart(2, '0');
+  const dateStr = yy + mm + dd;
+  const secondsSinceMidnight = now.getHours() * 3600 + now.getMinutes() * 60 + now.getSeconds();
+  const timeBlocks = Math.floor(secondsSinceMidnight / 2);
+  const timeEncoded = timeBlocks.toString(36).padStart(3, '0');
+  const quickId = dateStr + '-' + timeEncoded;
+  const branchSlug = slug || 'quick';
+  const quickBranchName = config.git.quick_branch_template
+    ? config.git.quick_branch_template
+        .replace('{num}', quickId)
+        .replace('{quick}', quickId)
+        .replace('{slug}', branchSlug)
+    : null;
+
+  const [plannerModel, executorModel, checkerModel, verifierModel] = await Promise.all([
+    getModelAlias('gsd-planner', projectDir),
+    getModelAlias('gsd-executor', projectDir),
+    getModelAlias('gsd-plan-checker', projectDir),
+    getModelAlias('gsd-verifier', projectDir),
+  ]);
+
+  const result: Record<string, unknown> = {
+    planner_model: plannerModel,
+    executor_model: executorModel,
+    checker_model: checkerModel,
+    verifier_model: verifierModel,
+    commit_docs: config.commit_docs,
+    branch_name: quickBranchName,
+    quick_id: quickId,
+    slug,
+    description,
+    date: now.toISOString().split('T')[0],
+    timestamp: now.toISOString(),
+    quick_dir: '.planning/quick',
+    task_dir: slug ? `.planning/quick/${quickId}-${slug}` : null,
+    roadmap_exists: existsSync(join(planningDir, 'ROADMAP.md')),
+    planning_exists: existsSync(join(projectDir, '.planning')),
+  };
+
+  return { data: withProjectRoot(projectDir, result, config as Record<string, unknown>) };
+};
+
+// ─── initResume ───────────────────────────────────────────────────────────
+
+/**
+ * Init handler for resume-project workflow.
+ * Port of cmdInitResume from init.cjs lines 506-536.
+ */
+export const initResume: QueryHandler = async (_args, projectDir) => {
+  const config = await loadConfig(projectDir);
+  const planningDir = join(projectDir, '.planning');
+
+  let interruptedAgentId: string | null = null;
+  try {
+    interruptedAgentId = readFileSync(join(projectDir, '.planning', 'current-agent-id.txt'), 'utf-8').trim();
+  } catch { /* intentionally empty */ }
+
+  const result: Record<string, unknown> = {
+    state_exists: existsSync(join(planningDir, 'STATE.md')),
+    roadmap_exists: existsSync(join(planningDir, 'ROADMAP.md')),
+    project_exists: pathExists(projectDir, '.planning/PROJECT.md'),
+    planning_exists: existsSync(join(projectDir, '.planning')),
+    state_path: toPosixPath(relative(projectDir, join(planningDir, 'STATE.md'))),
+    roadmap_path: toPosixPath(relative(projectDir, join(planningDir, 'ROADMAP.md'))),
+    project_path: '.planning/PROJECT.md',
+    has_interrupted_agent: !!interruptedAgentId,
+    interrupted_agent_id: interruptedAgentId,
+    commit_docs: config.commit_docs,
+  };
+
+  return { data: withProjectRoot(projectDir, result, config as Record<string, unknown>) };
+};
+
+// ─── initVerifyWork ───────────────────────────────────────────────────────
+
+/**
+ * Init handler for verify-work workflow.
+ * Port of cmdInitVerifyWork from init.cjs lines 538-586.
+ */
+export const initVerifyWork: QueryHandler = async (args, projectDir) => {
+  const phase = args[0];
+  if (!phase) {
+    return { data: { error: 'phase required for init verify-work' } };
+  }
+
+  const config = await loadConfig(projectDir);
+  const { phaseInfo } = await getPhaseInfoWithFallback(phase, projectDir);
+
+  const [plannerModel, checkerModel] = await Promise.all([
+    getModelAlias('gsd-planner', projectDir),
+    getModelAlias('gsd-plan-checker', projectDir),
+  ]);
+
+  const result: Record<string, unknown> = {
+    planner_model: plannerModel,
+    checker_model: checkerModel,
+    commit_docs: config.commit_docs,
+    phase_found: !!(phaseInfo && phaseInfo.found),
+    phase_dir: (phaseInfo?.directory as string) ?? null,
+    phase_number: (phaseInfo?.phase_number as string) ?? null,
+    phase_name: (phaseInfo?.phase_name as string) ?? null,
+    has_verification: (phaseInfo?.has_verification as boolean) || false,
+  };
+
+  return { data: withProjectRoot(projectDir, result, config as Record<string, unknown>) };
+};
+
+// ─── initPhaseOp ──────────────────────────────────────────────────────────
+
+/**
+ * Init handler for discuss-phase and similar phase operations.
+ * Port of cmdInitPhaseOp from init.cjs lines 588-697.
+ */
+export const initPhaseOp: QueryHandler = async (args, projectDir) => {
+  const phase = args[0];
+  if (!phase) {
+    return { data: { error: 'phase required for init phase-op' } };
+  }
+
+  const config = await loadConfig(projectDir);
+  const planningDir = join(projectDir, '.planning');
+
+  // findPhase with archived override: if only match is archived, prefer ROADMAP
+  const phaseResult = await findPhase([phase], projectDir);
+  let phaseInfo = phaseResult.data as Record<string, unknown> | null;
+
+  const roadmapResult = await roadmapGetPhase([phase], projectDir);
+  const roadmapPhase = roadmapResult.data as Record<string, unknown> | null;
+
+  // If the only match comes from an archived milestone, prefer current ROADMAP
+  if (phaseInfo?.archived && roadmapPhase?.found) {
+    const phaseName = roadmapPhase.phase_name as string;
+    phaseInfo = {
+      found: true,
+      directory: null,
+      phase_number: roadmapPhase.phase_number,
+      phase_name: phaseName,
+      phase_slug: phaseName ? generateSlugInternal(phaseName) : null,
+      plans: [],
+      summaries: [],
+      incomplete_plans: [],
+      has_research: false,
+      has_context: false,
+      has_verification: false,
+    };
+  }
+
+  // Fallback to ROADMAP.md if no directory exists
+  if (!phaseInfo || !phaseInfo.found) {
+    if (roadmapPhase?.found) {
+      const phaseName = roadmapPhase.phase_name as string;
+      phaseInfo = {
+        found: true,
+        directory: null,
+        phase_number: roadmapPhase.phase_number,
+        phase_name: phaseName,
+        phase_slug: phaseName ? generateSlugInternal(phaseName) : null,
+        plans: [],
+        summaries: [],
+        incomplete_plans: [],
+        has_research: false,
+        has_context: false,
+        has_verification: false,
+      };
+    }
+  }
+
+  const phaseFound = !!(phaseInfo && phaseInfo.found);
+  const phaseNumber = (phaseInfo?.phase_number as string) || null;
+  const plans = (phaseInfo?.plans || []) as string[];
+
+  const result: Record<string, unknown> = {
+    commit_docs: config.commit_docs,
+    brave_search: config.brave_search,
+    firecrawl: config.firecrawl,
+    exa_search: config.exa_search,
+    phase_found: phaseFound,
+    phase_dir: (phaseInfo?.directory as string) ?? null,
+    phase_number: phaseNumber,
+    phase_name: (phaseInfo?.phase_name as string) ?? null,
+    phase_slug: (phaseInfo?.phase_slug as string) ?? null,
+    padded_phase: phaseNumber ? normalizePhaseName(phaseNumber) : null,
+    has_research: (phaseInfo?.has_research as boolean) || false,
+    has_context: (phaseInfo?.has_context as boolean) || false,
+    has_plans: plans.length > 0,
+    has_verification: (phaseInfo?.has_verification as boolean) || false,
+    has_reviews: (phaseInfo?.has_reviews as boolean) || false,
+    plan_count: plans.length,
+    roadmap_exists: existsSync(join(planningDir, 'ROADMAP.md')),
+    planning_exists: existsSync(planningDir),
+    state_path: toPosixPath(relative(projectDir, join(planningDir, 'STATE.md'))),
+    roadmap_path: toPosixPath(relative(projectDir, join(planningDir, 'ROADMAP.md'))),
+    requirements_path: toPosixPath(relative(projectDir, join(planningDir, 'REQUIREMENTS.md'))),
+  };
+
+  // Add artifact paths if phase directory exists
+  if (phaseInfo?.directory) {
+    const phaseDirFull = join(projectDir, phaseInfo.directory as string);
+    try {
+      const files = readdirSync(phaseDirFull);
+      const contextFile = files.find(f => f.endsWith('-CONTEXT.md') || f === 'CONTEXT.md');
+      if (contextFile) result.context_path = toPosixPath(join(phaseInfo.directory as string, contextFile));
+      const researchFile = files.find(f => f.endsWith('-RESEARCH.md') || f === 'RESEARCH.md');
+      if (researchFile) result.research_path = toPosixPath(join(phaseInfo.directory as string, researchFile));
+      const verificationFile = files.find(f => f.endsWith('-VERIFICATION.md') || f === 'VERIFICATION.md');
+      if (verificationFile) result.verification_path = toPosixPath(join(phaseInfo.directory as string, verificationFile));
+      const uatFile = files.find(f => f.endsWith('-UAT.md') || f === 'UAT.md');
+      if (uatFile) result.uat_path = toPosixPath(join(phaseInfo.directory as string, uatFile));
+      const reviewsFile = files.find(f => f.endsWith('-REVIEWS.md') || f === 'REVIEWS.md');
+      if (reviewsFile) result.reviews_path = toPosixPath(join(phaseInfo.directory as string, reviewsFile));
+    } catch { /* intentionally empty */ }
+  }
+
+  return { data: withProjectRoot(projectDir, result, config as Record<string, unknown>) };
+};
+
+// ─── initTodos ────────────────────────────────────────────────────────────
+
+/**
+ * Init handler for check-todos and add-todo workflows.
+ * Port of cmdInitTodos from init.cjs lines 699-756.
+ */
+export const initTodos: QueryHandler = async (args, projectDir) => {
+  const area = args[0] || null;
+  const config = await loadConfig(projectDir);
+  const planningDir = join(projectDir, '.planning');
+  const now = new Date();
+
+  const pendingDir = join(planningDir, 'todos', 'pending');
+  let count = 0;
+  const todos: Array<Record<string, unknown>> = [];
+
+  try {
+    const files = readdirSync(pendingDir).filter(f => f.endsWith('.md'));
+    for (const file of files) {
+      try {
+        const content = readFileSync(join(pendingDir, file), 'utf-8');
+        const createdMatch = content.match(/^created:\s*(.+)$/m);
+        const titleMatch = content.match(/^title:\s*(.+)$/m);
+        const areaMatch = content.match(/^area:\s*(.+)$/m);
+        const todoArea = areaMatch ? areaMatch[1].trim() : 'general';
+
+        if (area && todoArea !== area) continue;
+
+        count++;
+        todos.push({
+          file,
+          created: createdMatch ? createdMatch[1].trim() : 'unknown',
+          title: titleMatch ? titleMatch[1].trim() : 'Untitled',
+          area: todoArea,
+          path: toPosixPath(relative(projectDir, join(pendingDir, file))),
+        });
+      } catch { /* intentionally empty */ }
+    }
+  } catch { /* intentionally empty */ }
+
+  const result: Record<string, unknown> = {
+    commit_docs: config.commit_docs,
+    date: now.toISOString().split('T')[0],
+    timestamp: now.toISOString(),
+    todo_count: count,
+    todos,
+    area_filter: area,
+    pending_dir: toPosixPath(relative(projectDir, join(planningDir, 'todos', 'pending'))),
+    completed_dir: toPosixPath(relative(projectDir, join(planningDir, 'todos', 'completed'))),
+    planning_exists: existsSync(planningDir),
+    todos_dir_exists: existsSync(join(planningDir, 'todos')),
+    pending_dir_exists: existsSync(pendingDir),
+  };
+
+  return { data: withProjectRoot(projectDir, result, config as Record<string, unknown>) };
+};
+
+// ─── initMilestoneOp ─────────────────────────────────────────────────────
+
+/**
+ * Init handler for complete-milestone and audit-milestone workflows.
+ * Port of cmdInitMilestoneOp from init.cjs lines 758-817.
+ */
+export const initMilestoneOp: QueryHandler = async (_args, projectDir) => {
+  const config = await loadConfig(projectDir);
+  const planningDir = join(projectDir, '.planning');
+  const milestone = await getMilestoneInfo(projectDir);
+
+  const phasesDir = join(planningDir, 'phases');
+  let phaseCount = 0;
+  let completedPhases = 0;
+
+  try {
+    const entries = readdirSync(phasesDir, { withFileTypes: true });
+    const dirs = entries.filter(e => e.isDirectory()).map(e => e.name);
+    phaseCount = dirs.length;
+
+    for (const dir of dirs) {
+      try {
+        const phaseFiles = readdirSync(join(phasesDir, dir));
+        const hasSummary = phaseFiles.some(f => f.endsWith('-SUMMARY.md') || f === 'SUMMARY.md');
+        if (hasSummary) completedPhases++;
+      } catch { /* intentionally empty */ }
+    }
+  } catch { /* intentionally empty */ }
+
+  const archiveDir = join(projectDir, '.planning', 'archive');
+  let archivedMilestones: string[] = [];
+  try {
+    archivedMilestones = readdirSync(archiveDir, { withFileTypes: true })
+      .filter(e => e.isDirectory())
+      .map(e => e.name);
+  } catch { /* intentionally empty */ }
+
+  const result: Record<string, unknown> = {
+    commit_docs: config.commit_docs,
+    milestone_version: milestone.version,
+    milestone_name: milestone.name,
+    milestone_slug: generateSlugInternal(milestone.name),
+    phase_count: phaseCount,
+    completed_phases: completedPhases,
+    all_phases_complete: phaseCount > 0 && phaseCount === completedPhases,
+    archived_milestones: archivedMilestones,
+    archive_count: archivedMilestones.length,
+    project_exists: pathExists(projectDir, '.planning/PROJECT.md'),
+    roadmap_exists: existsSync(join(planningDir, 'ROADMAP.md')),
+    state_exists: existsSync(join(planningDir, 'STATE.md')),
+    archive_exists: existsSync(archiveDir),
+    phases_dir_exists: existsSync(phasesDir),
+  };
+
+  return { data: withProjectRoot(projectDir, result, config as Record<string, unknown>) };
+};
+
+// ─── initMapCodebase ──────────────────────────────────────────────────────
+
+/**
+ * Init handler for map-codebase workflow.
+ * Port of cmdInitMapCodebase from init.cjs lines 819-852.
+ */
+export const initMapCodebase: QueryHandler = async (_args, projectDir) => {
+  const config = await loadConfig(projectDir);
+  const codebaseDir = join(projectDir, '.planning', 'codebase');
+  let existingMaps: string[] = [];
+  try {
+    existingMaps = readdirSync(codebaseDir).filter(f => f.endsWith('.md'));
+  } catch { /* intentionally empty */ }
+
+  const mapperModel = await getModelAlias('gsd-codebase-mapper', projectDir);
+
+  const result: Record<string, unknown> = {
+    mapper_model: mapperModel,
+    commit_docs: config.commit_docs,
+    search_gitignored: config.search_gitignored,
+    parallelization: config.parallelization,
+    subagent_timeout: (config as Record<string, unknown>).subagent_timeout ?? undefined,
+    codebase_dir: '.planning/codebase',
+    existing_maps: existingMaps,
+    has_maps: existingMaps.length > 0,
+    planning_exists: pathExists(projectDir, '.planning'),
+    codebase_dir_exists: pathExists(projectDir, '.planning/codebase'),
+  };
+
+  return { data: withProjectRoot(projectDir, result, config as Record<string, unknown>) };
+};
+
+// ─── initNewWorkspace ─────────────────────────────────────────────────────
+
+/**
+ * Init handler for new-workspace workflow.
+ * Port of cmdInitNewWorkspace from init.cjs lines 1311-1335.
+ * T-14-01: Validates workspace name rejects path separators.
+ */
+export const initNewWorkspace: QueryHandler = async (_args, projectDir) => {
+  const home = process.env.HOME || homedir();
+  const defaultBase = join(home, 'gsd-workspaces');
+
+  // Detect child git repos (one level deep)
+  const childRepos: Array<{ name: string; path: string; has_uncommitted: boolean }> = [];
+  try {
+    const entries = readdirSync(projectDir, { withFileTypes: true });
+    for (const entry of entries) {
+      if (!entry.isDirectory() || entry.name.startsWith('.')) continue;
+      const fullPath = join(projectDir, entry.name);
+      if (existsSync(join(fullPath, '.git'))) {
+        let hasUncommitted = false;
+        try {
+          const status = execSync('git status --porcelain', { cwd: fullPath, encoding: 'utf8', timeout: 5000, stdio: 'pipe' });
+          hasUncommitted = status.trim().length > 0;
+        } catch { /* best-effort */ }
+        childRepos.push({ name: entry.name, path: fullPath, has_uncommitted: hasUncommitted });
+      }
+    }
+  } catch { /* intentionally empty */ }
+
+  let worktreeAvailable = false;
+  try {
+    execSync('git --version', { encoding: 'utf8', timeout: 5000, stdio: 'pipe' });
+    worktreeAvailable = true;
+  } catch { /* no git */ }
+
+  const result: Record<string, unknown> = {
+    default_workspace_base: defaultBase,
+    child_repos: childRepos,
+    child_repo_count: childRepos.length,
+    worktree_available: worktreeAvailable,
+    is_git_repo: pathExists(projectDir, '.git'),
+    cwd_repo_name: basename(projectDir),
+  };
+
+  return { data: withProjectRoot(projectDir, result) };
+};
+
+// ─── initListWorkspaces ───────────────────────────────────────────────────
+
+/**
+ * Init handler for list-workspaces workflow.
+ * Port of cmdInitListWorkspaces from init.cjs lines 1337-1381.
+ */
+export const initListWorkspaces: QueryHandler = async (_args, _projectDir) => {
+  const home = process.env.HOME || homedir();
+  const defaultBase = join(home, 'gsd-workspaces');
+
+  const workspaces: Array<Record<string, unknown>> = [];
+  if (existsSync(defaultBase)) {
+    let entries: Array<{ isDirectory(): boolean; name: string }> = [];
+    try {
+      entries = readdirSync(defaultBase, { withFileTypes: true }) as unknown as typeof entries;
+    } catch { entries = []; }
+    for (const entry of entries) {
+      if (!entry.isDirectory()) continue;
+      const wsPath = join(defaultBase, String(entry.name));
+      const manifestPath = join(wsPath, 'WORKSPACE.md');
+      if (!existsSync(manifestPath)) continue;
+
+      let repoCount = 0;
+      let strategy = 'unknown';
+      try {
+        const manifest = readFileSync(manifestPath, 'utf8');
+        const strategyMatch = manifest.match(/^Strategy:\s*(.+)$/m);
+        if (strategyMatch) strategy = strategyMatch[1].trim();
+        const tableRows = manifest.split('\n').filter(l => l.match(/^\|\s*\w/) && !l.includes('Repo') && !l.includes('---'));
+        repoCount = tableRows.length;
+      } catch { /* best-effort */ }
+      const hasProject = existsSync(join(wsPath, '.planning', 'PROJECT.md'));
+
+      workspaces.push({
+        name: entry.name,
+        path: wsPath,
+        repo_count: repoCount,
+        strategy,
+        has_project: hasProject,
+      });
+    }
+  }
+
+  const result: Record<string, unknown> = {
+    workspace_base: defaultBase,
+    workspaces,
+    workspace_count: workspaces.length,
+  };
+
+  return { data: result };
+};
+
+// ─── initRemoveWorkspace ──────────────────────────────────────────────────
+
+/**
+ * Init handler for remove-workspace workflow.
+ * Port of cmdInitRemoveWorkspace from init.cjs lines 1383-1443.
+ * T-14-01: Validates workspace name rejects path separators and '..' sequences.
+ */
+export const initRemoveWorkspace: QueryHandler = async (args, _projectDir) => {
+  const name = args[0];
+  if (!name) {
+    return { data: { error: 'workspace name required for init remove-workspace' } };
+  }
+
+  // T-14-01: Reject path traversal attempts
+  if (name.includes('/') || name.includes('\\') || name.includes('..')) {
+    return { data: { error: `Invalid workspace name: ${name} (path separators not allowed)` } };
+  }
+
+  const home = process.env.HOME || homedir();
+  const defaultBase = join(home, 'gsd-workspaces');
+  const wsPath = join(defaultBase, name);
+  const manifestPath = join(wsPath, 'WORKSPACE.md');
+
+  if (!existsSync(wsPath)) {
+    return { data: { error: `Workspace not found: ${wsPath}` } };
+  }
+
+  const repos: Array<Record<string, unknown>> = [];
+  let strategy = 'unknown';
+  if (existsSync(manifestPath)) {
+    try {
+      const manifest = readFileSync(manifestPath, 'utf8');
+      const strategyMatch = manifest.match(/^Strategy:\s*(.+)$/m);
+      if (strategyMatch) strategy = strategyMatch[1].trim();
+
+      const lines = manifest.split('\n');
+      for (const line of lines) {
+        const match = line.match(/^\|\s*(\S+)\s*\|\s*(\S+)\s*\|\s*(\S+)\s*\|\s*(\S+)\s*\|$/);
+        if (match && match[1] !== 'Repo' && !match[1].includes('---')) {
+          repos.push({ name: match[1], source: match[2], branch: match[3], strategy: match[4] });
+        }
+      }
+    } catch { /* best-effort */ }
+  }
+
+  // Check for uncommitted changes in workspace repos
+  const dirtyRepos: string[] = [];
+  for (const repo of repos) {
+    const repoPath = join(wsPath, repo.name as string);
+    if (!existsSync(repoPath)) continue;
+    try {
+      const status = execSync('git status --porcelain', { cwd: repoPath, encoding: 'utf8', timeout: 5000, stdio: 'pipe' });
+      if (status.trim().length > 0) {
+        dirtyRepos.push(repo.name as string);
+      }
+    } catch { /* best-effort */ }
+  }
+
+  const result: Record<string, unknown> = {
+    workspace_name: name,
+    workspace_path: wsPath,
+    has_manifest: existsSync(manifestPath),
+    strategy,
+    repos,
+    repo_count: repos.length,
+    dirty_repos: dirtyRepos,
+    has_dirty_repos: dirtyRepos.length > 0,
+  };
+
+  return { data: result };
+};
+
+// ─── docsInit ────────────────────────────────────────────────────────────
+
+export const docsInit: QueryHandler = async (_args, projectDir) => {
+  return {
+    data: {
+      project_exists: existsSync(join(projectDir, '.planning', 'PROJECT.md')),
+      roadmap_exists: existsSync(join(projectDir, '.planning', 'ROADMAP.md')),
+      docs_dir: '.planning/docs',
+      project_root: projectDir,
+    },
+  };
+};