Deepen query dispatch seam with Command Topology Module (#3078)

* Deepen query dispatch seam with command topology module

* Stabilize SDK parity defaults and integration test gating

* docs(architecture): record pre-project config policy and e2e gate

* refactor(query): stop injecting native adapter in CLI dispatch path

* fix(config): align workflow auto-chain typing and docs

sdk/src/query/query-cli-adapter.ts

@@ -2,7 +2,7 @@ import { createRegistry } from './index.js';
 import { runQueryDispatch } from './query-dispatch.js';
 import { resolveGsdToolsPath } from '../gsd-tools.js';
 import { resolveQueryRuntimeContext } from './query-runtime-context.js';
-import { createQueryNativeDispatchAdapter } from './query-native-dispatch-adapter.js';
+import { createCommandTopology } from './command-topology.js';
 import { buildQueryCliOutputFromDispatch, buildQueryCliOutputFromError, type QueryCliAdapterOutput } from './query-cli-output.js';
 
 export interface QueryCliAdapterInput {
@@ -22,13 +22,14 @@ export async function runQueryCliCommand(input: QueryCliAdapterInput): Promise<Q
   try {
     const runtime = resolveQueryRuntimeContext({ projectDir: input.projectDir, ws: input.ws });
     const registry = createRegistry();
+    const topology = createCommandTopology(registry);
     const out = await runQueryDispatch({
       registry,
       projectDir: runtime.projectDir,
       ws: runtime.ws,
       cjsFallbackEnabled: queryFallbackToCjsEnabled(),
       resolveGsdToolsPath,
-      nativeAdapter: createQueryNativeDispatchAdapter(registry, runtime.projectDir, runtime.ws),
+      topology,
     }, input.queryArgv ?? []);
 
     return buildQueryCliOutputFromDispatch(out);