Deepen query dispatch seam with Command Topology Module (#3078)

* Deepen query dispatch seam with command topology module

* Stabilize SDK parity defaults and integration test gating

* docs(architecture): record pre-project config policy and e2e gate

* refactor(query): stop injecting native adapter in CLI dispatch path

* fix(config): align workflow auto-chain typing and docs

sdk/src/query/state-mutation.test.ts

@@ -318,7 +318,7 @@ describe('stateBeginPhase', () => {
 
     // Must return the actual values, not the flag names
     expect(data.phase).toBe('99');
-    expect(data.name).toBe('probe-test');
+    expect(data.phase_name).toBe('probe-test');
     expect(data.plan_count).toBe(1);
 
     // STATE.md must contain clean output, not literal "--phase"
@@ -336,7 +336,7 @@ describe('stateBeginPhase', () => {
     const result = await stateBeginPhase(['42', 'Positional Test', '5'], tmpDir);
     const data = result.data as Record<string, unknown>;
     expect(data.phase).toBe('42');
-    expect(data.name).toBe('Positional Test');
+    expect(data.phase_name).toBe('Positional Test');
     expect(data.plan_count).toBe(5);
   });