* test(#2751): regression guard — no command-position bare gsd-tools calls Agents/workflows instructed bare `gsd-tools <verb>` invocations that fail with 'command not found' on a shim-only install (#725 fixed only the Codex conversion pipeline; the Claude-facing source shipped them verbatim). Adds a source-text guard (allow-test-rule: source-text-is-the-product) scanning agents/*.md + gsd-core/workflows/*.md for the operative shape `gsd-tools <verb> <arg>`, excluding command -v probes / resolver definitions, with a documented PROSE_ALLOWLIST for descriptive mentions that name the command without instructing literal invocation. A stale-allowlist check ensures entries stay real. RED first; source fix lands next commit. * fix(#2751): normalize bare gsd-tools calls to gsd_run in Claude-facing source The 12 command-position bare `gsd-tools <verb>` instructions across agents/ and gsd-core/workflows/ failed with 'command not found' on a shim-only install (no gsd-tools binary on PATH). #725 fixed this only for the Codex install-conversion pipeline; the Claude-facing SOURCE shipped the bare calls verbatim, and new ones kept accumulating (new-project.md:114 landed 12 days AFTER #725 closed). Rewrite each operative site to the portable `gsd_run` resolver that the same files already define (3-18x each) — a pure command-position token swap preserving all arguments, flags, --files, and surrounding prose. Every runtime now benefits from one source change instead of each needing its own converter. Touched sites (12): gsd-intel-updater (validate/snapshot/extract-exports), gsd-code-fixer (query commit), gsd-planner (learnings.query), gsd-project- researcher (websearch/research-plan/classify-confidence), gsd-phase-researcher (websearch/research-plan/classify-confidence), new-project (project-instruction- file / commit --files), new-milestone (commit --files). Preserves command -v gsd-tools probes, resolver-snippet definitions, and the 4 descriptive prose mentions that NAME the command without instructing invocation. RED @ 1bb12ba1. * chore(#2751): allow-test-rule issue ref + changeset fragment Add the (#2751) tracking ref to the source-text-is-the-product annotation per ADR-456, and the .changeset Fixed fragment (pr:0, backfilled post-PR). * fix(#2751): convert remaining command-position bare gsd-tools calls (verify-summary, windows, worktree, smart-entry, quick-tasks-append) Isolated adversarial review (Step 4) found the first pass missed genuine command-position bare calls because the regression test's hand-maintained 6-verb list silently false-passed verify-summary (the 'verify' branch matched the prefix then died on the hyphen) and omitted windows/worktree/smart-entry/ quick-tasks-append entirely. Convert these 8 additional operative sites across new-project.md, new-milestone.md, ship.md, execute-phase.md, progress.md, smart-entry.md, quick.md. * chore(#2751): backfill changeset PR number (2851) * fix(#2751): normalize allowlist paths to forward slashes — Windows path-separator false-flag The PROSE_ALLOWLIST is keyed by file:line using forward-slash paths, but path.relative() returns backslash separators on Windows, so the allowlist lookup failed and the 6 descriptive mentions were flagged as offenders on the windows-latest CI lane. Normalize rel to forward slashes before the lookup so the allowlist matches identically on every OS. --------- Co-authored-by: Test <test@example.com>
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@@ -456,7 +456,7 @@ For each finding in sorted order:
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**If verification passed:**
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Use `gsd-tools query commit` with conventional format (message first, then every staged file path):
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Use `gsd_run query commit` with conventional format (message first, then every staged file path):
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```bash
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_GSD_SHIM_NAME="gsd-tools.cjs"; _GSD_RUNTIME_ROOT="${RUNTIME_DIR:-$(git rev-parse --show-toplevel 2>/dev/null || pwd)}"; GSD_TOOLS="${_GSD_RUNTIME_ROOT}/gsd-core/bin/${_GSD_SHIM_NAME}"; if [ -f "$GSD_TOOLS" ]; then gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${_GSD_RUNTIME_ROOT}/.claude/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${_GSD_RUNTIME_ROOT}/.claude/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${_GSD_RUNTIME_ROOT}/.codex/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${_GSD_RUNTIME_ROOT}/.codex/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif command -v gsd-tools >/dev/null 2>&1; then GSD_TOOLS="$(command -v gsd-tools)"; gsd_run() { "$GSD_TOOLS" "$@"; }; elif [ -f "${CLAUDE_CONFIG_DIR:-$HOME/.claude}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${CLAUDE_CONFIG_DIR:-$HOME/.claude}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${HERMES_HOME:-$HOME/.hermes}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${HERMES_HOME:-$HOME/.hermes}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${CURSOR_CONFIG_DIR:-$HOME/.cursor}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${CURSOR_CONFIG_DIR:-$HOME/.cursor}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${CODEX_HOME:-$HOME/.codex}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${CODEX_HOME:-$HOME/.codex}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${GEMINI_CONFIG_DIR:-$HOME/.gemini}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${GEMINI_CONFIG_DIR:-$HOME/.gemini}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${COPILOT_CONFIG_DIR:-$HOME/.copilot}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${COPILOT_CONFIG_DIR:-$HOME/.copilot}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${WINDSURF_CONFIG_DIR:-$HOME/.codeium/windsurf}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${WINDSURF_CONFIG_DIR:-$HOME/.codeium/windsurf}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${AUGMENT_CONFIG_DIR:-$HOME/.augment}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${AUGMENT_CONFIG_DIR:-$HOME/.augment}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${TRAE_CONFIG_DIR:-$HOME/.trae}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${TRAE_CONFIG_DIR:-$HOME/.trae}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${QWEN_CONFIG_DIR:-$HOME/.qwen}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${QWEN_CONFIG_DIR:-$HOME/.qwen}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${CODEBUDDY_CONFIG_DIR:-$HOME/.codebuddy}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${CODEBUDDY_CONFIG_DIR:-$HOME/.codebuddy}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${CLINE_CONFIG_DIR:-$HOME/.cline}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${CLINE_CONFIG_DIR:-$HOME/.cline}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${GROK_AGENTS_HOME:-$HOME/.agents}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${GROK_AGENTS_HOME:-$HOME/.agents}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${ANTIGRAVITY_CONFIG_DIR:-$HOME/.gemini/antigravity}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${ANTIGRAVITY_CONFIG_DIR:-$HOME/.gemini/antigravity}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${OPENCODE_CONFIG_DIR:-${XDG_CONFIG_HOME:-$HOME/.config}/opencode}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${OPENCODE_CONFIG_DIR:-${XDG_CONFIG_HOME:-$HOME/.config}/opencode}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${KILO_CONFIG_DIR:-${XDG_CONFIG_HOME:-$HOME/.config}/kilo}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${KILO_CONFIG_DIR:-${XDG_CONFIG_HOME:-$HOME/.config}/kilo}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; else echo "ERROR: gsd-tools.cjs not found at $GSD_TOOLS and gsd-tools is not on PATH. Run: npx -y @opengsd/gsd-core@latest --claude --local" >&2; exit 1; fi; if [ -n "${CLAUDE_ENV_FILE:-}" ] && [ -n "${GSD_TOOLS:-}" ]; then printf "export PATH='%s':\"\$PATH\"\n" "${GSD_TOOLS%/*}" >> "$CLAUDE_ENV_FILE" 2>/dev/null || true; fi
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gsd_run query commit \
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@@ -123,7 +123,7 @@ All JSON files include a `_meta` object with `updated_at` (ISO timestamp) and `v
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}
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```
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**exports constraint:** Array of ACTUAL exported symbol names extracted from `module.exports` or `export` statements. MUST be real identifiers (e.g., `"configLoad"`, `"stateUpdate"`), NOT descriptions (e.g., `"config operations"`). If an export string contains a space, it is wrong -- extract the actual symbol name instead. Use `gsd-tools intel extract-exports <file>` to get accurate exports.
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**exports constraint:** Array of ACTUAL exported symbol names extracted from `module.exports` or `export` statements. MUST be real identifiers (e.g., `"configLoad"`, `"stateUpdate"`), NOT descriptions (e.g., `"config operations"`). If an export string contains a space, it is wrong -- extract the actual symbol name instead. Use `gsd_run intel extract-exports <file>` to get accurate exports.
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Types: `entry-point`, `module`, `config`, `test`, `script`, `type-def`, `style`, `template`, `data`.
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@@ -255,7 +255,7 @@ gsd_run intel patch-meta .planning/intel/arch-decisions.json
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### Step 6.5: Self-Check
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Run: `gsd-tools intel validate`
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Run: `gsd_run intel validate`
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Review the output:
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@@ -267,7 +267,7 @@ This step is MANDATORY -- do not skip it.
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### Step 7: Snapshot
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Run: `gsd-tools intel snapshot`
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Run: `gsd_run intel snapshot`
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This writes `.last-refresh.json` with accurate timestamps and hashes. Do NOT write `.last-refresh.json` manually.
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</execution_flow>
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@@ -138,7 +138,7 @@ For each item where `fetch` is present, invoke the MCP tool matching `fetch.prov
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| `exa` | `mcp__exa__web_search_exa` with `fetch.query` |
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| `tavily` | `mcp__tavily__search` with `fetch.query` |
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| `perplexity` | `mcp__perplexity__*` (use the appropriate perplexity MCP tool for the query) |
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| `brave` | `gsd-tools query websearch "<fetch.query>"` (Brave-backed) or built-in `WebSearch` |
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| `brave` | `gsd_run query websearch "<fetch.query>"` (Brave-backed) or built-in `WebSearch` |
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| `firecrawl` | `mcp__firecrawl__scrape` with url (scrape kind) or `mcp__firecrawl__search` |
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| `websearch` | built-in `WebSearch` tool |
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| `webfetch` | built-in `WebFetch` tool |
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@@ -709,7 +709,7 @@ docker info 2>/dev/null | head -3
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## Step 3: Execute Research Protocol
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For each domain, use the `<tool_strategy>` seam (Steps A–D): build questions JSON, call `gsd-tools query research-plan`, run the indicated provider per item, then cache each digest. Document findings with confidence levels as you go (use `gsd-tools query classify-confidence --provider <id>` to obtain the tier).
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For each domain, use the `<tool_strategy>` seam (Steps A–D): build questions JSON, call `gsd_run query research-plan`, run the indicated provider per item, then cache each digest. Document findings with confidence levels as you go (use `gsd_run query classify-confidence --provider <id>` to obtain the tier).
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## Step 4: Validation Architecture Research (if nyquist_validation enabled)
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@@ -726,7 +726,7 @@ Read the most recent milestone retrospective and cross-milestone trends. Extract
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</step>
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<step name="inject_global_learnings">
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If `features.global_learnings` is `true`: run `gsd-tools query learnings.query --tag <tag> --limit 5` once per tag from PLAN.md frontmatter `tags` (or use the single most specific keyword). The handler matches one `--tag` at a time. Prefix matches with `[Prior learning from <project>]` as weak priors. Project-local decisions take precedence. Skip silently if disabled or no matches.
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If `features.global_learnings` is `true`: run `gsd_run query learnings.query --tag <tag> --limit 5` once per tag from PLAN.md frontmatter `tags` (or use the single most specific keyword). The handler matches one `--tag` at a time. Prefix matches with `[Prior learning from <project>]` as weak priors. Project-local decisions take precedence. Skip silently if disabled or no matches.
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</step>
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<step name="gather_phase_context">
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@@ -102,7 +102,7 @@ For each item where `fetch` is present, invoke the MCP tool matching `fetch.prov
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| `exa` | `mcp__exa__web_search_exa` with `fetch.query` |
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| `tavily` | `mcp__tavily__search` with `fetch.query` |
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| `perplexity` | `mcp__perplexity__*` (use the appropriate perplexity MCP tool for the query) |
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| `brave` | `gsd-tools query websearch "<fetch.query>"` (Brave-backed) or built-in `WebSearch` |
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| `brave` | `gsd_run query websearch "<fetch.query>"` (Brave-backed) or built-in `WebSearch` |
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| `firecrawl` | `mcp__firecrawl__scrape` with url (scrape kind) or `mcp__firecrawl__search` |
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| `websearch` | built-in `WebSearch` tool |
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| `webfetch` | built-in `WebFetch` tool |
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@@ -490,7 +490,7 @@ Orchestrator provides: project name/description, research mode, project context,
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## Step 3: Execute Research
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For each domain, use the `<tool_strategy>` seam (Steps A–D): build questions JSON, call `gsd-tools query research-plan`, run the indicated provider per item, then cache each digest. Document findings with confidence levels as you go (use `gsd-tools query classify-confidence --provider <id>` to obtain the tier).
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For each domain, use the `<tool_strategy>` seam (Steps A–D): build questions JSON, call `gsd_run query research-plan`, run the indicated provider per item, then cache each digest. Document findings with confidence levels as you go (use `gsd_run query classify-confidence --provider <id>` to obtain the tier).
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## Step 4: Quality Check
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