fix(#2751): normalize bare gsd-tools command-position calls to gsd_run in shipped source (#2851)

* test(#2751): regression guard — no command-position bare gsd-tools calls

Agents/workflows instructed bare `gsd-tools <verb>` invocations that fail with
'command not found' on a shim-only install (#725 fixed only the Codex conversion
pipeline; the Claude-facing source shipped them verbatim). Adds a source-text
guard (allow-test-rule: source-text-is-the-product) scanning agents/*.md +
gsd-core/workflows/*.md for the operative shape `gsd-tools <verb> <arg>`,
excluding command -v probes / resolver definitions, with a documented
PROSE_ALLOWLIST for descriptive mentions that name the command without
instructing literal invocation. A stale-allowlist check ensures entries stay
real. RED first; source fix lands next commit.

* fix(#2751): normalize bare gsd-tools calls to gsd_run in Claude-facing source

The 12 command-position bare `gsd-tools <verb>` instructions across agents/ and
gsd-core/workflows/ failed with 'command not found' on a shim-only install (no
gsd-tools binary on PATH). #725 fixed this only for the Codex install-conversion
pipeline; the Claude-facing SOURCE shipped the bare calls verbatim, and new ones
kept accumulating (new-project.md:114 landed 12 days AFTER #725 closed).

Rewrite each operative site to the portable `gsd_run` resolver that the same
files already define (3-18x each) — a pure command-position token swap
preserving all arguments, flags, --files, and surrounding prose. Every runtime
now benefits from one source change instead of each needing its own converter.

Touched sites (12): gsd-intel-updater (validate/snapshot/extract-exports),
gsd-code-fixer (query commit), gsd-planner (learnings.query), gsd-project-
researcher (websearch/research-plan/classify-confidence), gsd-phase-researcher
(websearch/research-plan/classify-confidence), new-project (project-instruction-
file / commit --files), new-milestone (commit --files). Preserves command -v
gsd-tools probes, resolver-snippet definitions, and the 4 descriptive prose
mentions that NAME the command without instructing invocation. RED @ 1bb12ba1.

* chore(#2751): allow-test-rule issue ref + changeset fragment

Add the (#2751) tracking ref to the source-text-is-the-product annotation per
ADR-456, and the .changeset Fixed fragment (pr:0, backfilled post-PR).

* fix(#2751): convert remaining command-position bare gsd-tools calls (verify-summary, windows, worktree, smart-entry, quick-tasks-append)

Isolated adversarial review (Step 4) found the first pass missed genuine
command-position bare calls because the regression test's hand-maintained
6-verb list silently false-passed verify-summary (the 'verify' branch matched
the prefix then died on the hyphen) and omitted windows/worktree/smart-entry/
quick-tasks-append entirely. Convert these 8 additional operative sites across
new-project.md, new-milestone.md, ship.md, execute-phase.md, progress.md,
smart-entry.md, quick.md.

* chore(#2751): backfill changeset PR number (2851)

* fix(#2751): normalize allowlist paths to forward slashes — Windows path-separator false-flag

The PROSE_ALLOWLIST is keyed by file:line using forward-slash paths, but
path.relative() returns backslash separators on Windows, so the allowlist
lookup failed and the 6 descriptive mentions were flagged as offenders on
the windows-latest CI lane. Normalize rel to forward slashes before the
lookup so the allowlist matches identically on every OS.

---------

Co-authored-by: Test <test@example.com>
This commit is contained in:
Tom Boucher
2026-07-30 11:18:07 -04:00
committed by GitHub
parent 0408276791
commit b36e3b7e1f
14 changed files with 220 additions and 21 deletions

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@@ -125,7 +125,7 @@ fi
When `USE_WORKTREES` is `false`, `ISOLATION` is forced to `none`: executors run sequentially on the main working tree. The per-plan decision below has no effect when worktrees are project-disabled.
`USE_WORKTREES` and `ISOLATION` are also reset for the run when `worktree base-check` detects the orchestrator HEAD has diverged from the worktree fork base (#683 — e.g. an unmerged milestone branch). This runs for **any** isolated run, not only Claude: fork-base divergence is a property of the repository, so it degrades a GSD-created worktree exactly as a harness-created one. The auto-degrade prints a one-line warning to stderr and falls through to the sequential path so executors do not hit the exit-42 worktree-branch-check halt. To restore parallel worktree execution, set `worktree.baseRef:"head"` in `.claude/settings.local.json` (or run `gsd-tools worktree set-baseref`) — this makes the fork base track the live HEAD instead of a fixed remote ref. The `worktree-branch-check` exit-42 guard inside each executor remains in place as a backstop.
`USE_WORKTREES` and `ISOLATION` are also reset for the run when `worktree base-check` detects the orchestrator HEAD has diverged from the worktree fork base (#683 — e.g. an unmerged milestone branch). This runs for **any** isolated run, not only Claude: fork-base divergence is a property of the repository, so it degrades a GSD-created worktree exactly as a harness-created one. The auto-degrade prints a one-line warning to stderr and falls through to the sequential path so executors do not hit the exit-42 worktree-branch-check halt. To restore parallel worktree execution, set `worktree.baseRef:"head"` in `.claude/settings.local.json` (or run `gsd_run worktree set-baseref`) — this makes the fork base track the live HEAD instead of a fixed remote ref. The `worktree-branch-check` exit-42 guard inside each executor remains in place as a backstop.
Read context window size for adaptive prompt enrichment:

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@@ -426,8 +426,8 @@ Commit after writing.
**Synthesizer output self-heal (#222) — verify SUMMARY.md materialized:** The synthesizer's canonical output is `.planning/research/SUMMARY.md` on disk; its brief structured return (`## SYNTHESIS COMPLETE` plus a few `###` confirmation lines) is NOT the file content. A known LLM false-refusal (issue #222) sometimes makes the agent return the full SUMMARY.md document inline — fabricating a write restriction (e.g. "the runtime is blocking file writes") — instead of writing the file. Prompt hardening alone does not fully eliminate it, so the orchestrator MUST absorb the failure deterministically before spawning `gsd-roadmapper`:
1. Verify `.planning/research/SUMMARY.md` exists AND is substantive — non-empty, and free of any leftover `<!-- gsd:write-continue -->` continuation sentinel (which marks a truncated/incomplete write). You may validate with `gsd-tools verify-summary .planning/research/SUMMARY.md` — it exits 0 regardless, so check its JSON `passed` field (`"passed": false` means missing or invalid), not the process exit code. If it passes, continue normally.
2. If it is MISSING or invalid AND the synthesizer's return message contains the FULL SUMMARY.md document — recognizable by the template's top-level markers `# Project Research Summary`, `## Key Findings`, `## Implications for Roadmap`, and `## Sources`, not merely the brief `## SYNTHESIS COMPLETE` confirmation — the false-refusal fired: write that returned document to `.planning/research/SUMMARY.md` with the Write tool, then commit ALL research artifacts the synthesizer owns (it commits on behalf of the four researchers) with `gsd-tools query commit "docs: complete project research" --files .planning/research/` unless they are already committed. Log `⚠ #222 self-heal: synthesizer returned SUMMARY.md inline without writing it; orchestrator persisted the file.`
1. Verify `.planning/research/SUMMARY.md` exists AND is substantive — non-empty, and free of any leftover `<!-- gsd:write-continue -->` continuation sentinel (which marks a truncated/incomplete write). You may validate with `gsd_run verify-summary .planning/research/SUMMARY.md` — it exits 0 regardless, so check its JSON `passed` field (`"passed": false` means missing or invalid), not the process exit code. If it passes, continue normally.
2. If it is MISSING or invalid AND the synthesizer's return message contains the FULL SUMMARY.md document — recognizable by the template's top-level markers `# Project Research Summary`, `## Key Findings`, `## Implications for Roadmap`, and `## Sources`, not merely the brief `## SYNTHESIS COMPLETE` confirmation — the false-refusal fired: write that returned document to `.planning/research/SUMMARY.md` with the Write tool, then commit ALL research artifacts the synthesizer owns (it commits on behalf of the four researchers) with `gsd_run query commit "docs: complete project research" --files .planning/research/` unless they are already committed. Log `⚠ #222 self-heal: synthesizer returned SUMMARY.md inline without writing it; orchestrator persisted the file.`
3. If it is MISSING or invalid AND the return is only a brief confirmation (no full SUMMARY document to recover), the synthesizer genuinely failed — surface the error and stop; do NOT spawn `gsd-roadmapper` against a missing or incomplete SUMMARY.md.
This guarantees `gsd-roadmapper` (which lists SUMMARY.md as required reading) never runs against a missing or truncated SUMMARY.md.

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@@ -111,7 +111,7 @@ elif [ -n "$OPENCODE_CONFIG_DIR" ] || [ -n "$OPENCODE_CONFIG" ]; then RUNTIME="o
else RUNTIME="claude"; fi
```
Set the instruction file variable via the shared runtime-name policy adapter (`gsd-tools query project-instruction-file`, backed by `getProjectInstructionFile` in `runtime-name-policy.cjs` — the single source of truth shared with `profile-output.cjs`):
Set the instruction file variable via the shared runtime-name policy adapter (`gsd_run query project-instruction-file`, backed by `getProjectInstructionFile` in `runtime-name-policy.cjs` — the single source of truth shared with `profile-output.cjs`):
```bash
INSTRUCTION_FILE=$(gsd_run query project-instruction-file --runtime "$RUNTIME")
```
@@ -1146,8 +1146,8 @@ Commit after writing.
**Synthesizer output self-heal (#222) — verify SUMMARY.md materialized:** The synthesizer's canonical output is `.planning/research/SUMMARY.md` on disk; its brief structured return (`## SYNTHESIS COMPLETE` plus a few `###` confirmation lines) is NOT the file content. A known LLM false-refusal (issue #222) sometimes makes the agent return the full SUMMARY.md document inline — fabricating a write restriction (e.g. "the runtime is blocking file writes") — instead of writing the file. Prompt hardening alone does not fully eliminate it, so the orchestrator MUST absorb the failure deterministically before spawning `gsd-roadmapper`:
1. Verify `.planning/research/SUMMARY.md` exists AND is substantive — non-empty, and free of any leftover `<!-- gsd:write-continue -->` continuation sentinel (which marks a truncated/incomplete write). You may validate with `gsd-tools verify-summary .planning/research/SUMMARY.md` — it exits 0 regardless, so check its JSON `passed` field (`"passed": false` means missing or invalid), not the process exit code. If it passes, continue normally.
2. If it is MISSING or invalid AND the synthesizer's return message contains the FULL SUMMARY.md document — recognizable by the template's top-level markers `# Project Research Summary`, `## Key Findings`, `## Implications for Roadmap`, and `## Sources`, not merely the brief `## SYNTHESIS COMPLETE` confirmation — the false-refusal fired: write that returned document to `.planning/research/SUMMARY.md` with the Write tool, then commit ALL research artifacts the synthesizer owns (it commits on behalf of the four researchers) with `gsd-tools query commit "docs: complete project research" --files .planning/research/` unless they are already committed. Log `⚠ #222 self-heal: synthesizer returned SUMMARY.md inline without writing it; orchestrator persisted the file.`
1. Verify `.planning/research/SUMMARY.md` exists AND is substantive — non-empty, and free of any leftover `<!-- gsd:write-continue -->` continuation sentinel (which marks a truncated/incomplete write). You may validate with `gsd_run verify-summary .planning/research/SUMMARY.md` — it exits 0 regardless, so check its JSON `passed` field (`"passed": false` means missing or invalid), not the process exit code. If it passes, continue normally.
2. If it is MISSING or invalid AND the synthesizer's return message contains the FULL SUMMARY.md document — recognizable by the template's top-level markers `# Project Research Summary`, `## Key Findings`, `## Implications for Roadmap`, and `## Sources`, not merely the brief `## SYNTHESIS COMPLETE` confirmation — the false-refusal fired: write that returned document to `.planning/research/SUMMARY.md` with the Write tool, then commit ALL research artifacts the synthesizer owns (it commits on behalf of the four researchers) with `gsd_run query commit "docs: complete project research" --files .planning/research/` unless they are already committed. Log `⚠ #222 self-heal: synthesizer returned SUMMARY.md inline without writing it; orchestrator persisted the file.`
3. If it is MISSING or invalid AND the return is only a brief confirmation (no full SUMMARY document to recover), the synthesizer genuinely failed — surface the error and stop; do NOT spawn `gsd-roadmapper` against a missing or incomplete SUMMARY.md.
This guarantees `gsd-roadmapper` (which lists SUMMARY.md as required reading) never runs against a missing or truncated SUMMARY.md.

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@@ -141,7 +141,7 @@ WINDOWS_OPEN=$(printf '%s' "$WINDOWS_STATUS" | jq -r '.ledger.open_count // 0' 2
WINDOWS_WAIVED=$(printf '%s' "$WINDOWS_STATUS" | jq -r '.ledger.waived_count // 0' 2>/dev/null || echo 0)
```
Render `Open Windows` only when `$WINDOWS_OPEN` is greater than `0` (or `$WINDOWS_WAIVED` is greater than `0`, so an auditable deferral history remains visible). Phrase: `{WINDOWS_OPEN} open, {WINDOWS_WAIVED} waived — resolves with /gsd:ship gate; inspect via gsd-tools windows status`. The ledger is cross-phase; the count is the project total, not the current phase's.
Render `Open Windows` only when `$WINDOWS_OPEN` is greater than `0` (or `$WINDOWS_WAIVED` is greater than `0`, so an auditable deferral history remains visible). Phrase: `{WINDOWS_OPEN} open, {WINDOWS_WAIVED} waived — resolves with /gsd:ship gate; inspect via gsd_run windows status`. The ledger is cross-phase; the count is the project total, not the current phase's.
## Active Debug Sessions

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@@ -994,7 +994,7 @@ Use `date` from init:
| ${quick_id} | ${DESCRIPTION} | ${date} | ${commit_hash} | [${quick_id}-${slug}](./quick/${quick_id}-${slug}/) |
```
For a schema-safe append outside this workflow (e.g. from fast.md), `gsd-tools quick-tasks-append --task <text>` performs the equivalent write via the shared, schema-backed `appendQuickTaskRow` helper (#2133, ADR-2143 §3/§7).
For a schema-safe append outside this workflow (e.g. from fast.md), `gsd_run quick-tasks-append --task <text>` performs the equivalent write via the shared, schema-backed `appendQuickTaskRow` helper (#2133, ADR-2143 §3/§7).
**7d. Update "Last activity" line:**

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@@ -139,14 +139,14 @@ Verify the work is ready to ship:
```
⚠ Broken-windows ship gate: WINDOWS.md has {WINDOWS_OPEN_COUNT} open window(s).
Resolve each entry before shipping, or explicitly waive with a recorded reason:
gsd-tools windows fixed <id> # defect resolved
gsd-tools windows waive <id> "<reason>" # justified deferral (reason required)
gsd_run windows fixed <id> # defect resolved
gsd_run windows waive <id> "<reason>" # justified deferral (reason required)
Then re-run /gsd:ship.
```
- **`WINDOWS_OPEN_COUNT` is `"?"`, empty, or non-numeric** → **fail closed and block** with `WINDOWS_SHIP_GATE_READ_FAILED` (the gate is strict equality to `0`; never ship on an unreadable ledger):
```
⚠ Broken-windows ship gate: could not read open_count from .planning/WINDOWS.md.
Inspect the file or run `gsd-tools windows status --raw` to diagnose. The ledger
Inspect the file or run `gsd_run windows status --raw` to diagnose. The ledger
may be malformed; fix it before shipping (an unparseable ledger is a broken window).
```

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@@ -1,5 +1,5 @@
<purpose>
GSD smart entry — the state-aware front door. Detect the current project situation via `gsd-tools smart-entry --json`, present a short menu of the right next actions, and dispatch to exactly one existing GSD command. This is a launcher/router only; it never does the work itself.
GSD smart entry — the state-aware front door. Detect the current project situation via `gsd_run smart-entry --json`, present a short menu of the right next actions, and dispatch to exactly one existing GSD command. This is a launcher/router only; it never does the work itself.
This is a *menu* front door, not a second router. For in-project forward motion (planning → executing → verify-pending) the recommended action is `/gsd:progress --next`, which delegates to the single gated advancement engine (`workflows/next.md`: Route 0 resume-incomplete-phase + Gates 1-3). smart-entry adds value only where `--next` cannot reach: pre-project, remediation (paused/blocked/verify-failed), and lifecycle exits (idle-stranded/complete). See `docs/adr/1787-gsd-next-smart-entry.md`.
</purpose>