test(#4522): migrate core CLI/domain state batch to named timeout constants (#4662)

Batch 11 of the ad hoc timeout literal migration (epic #4445). Replaces
every bare numeric timeout/timeoutMs object-literal property in
tests/state-document.test.cjs, tests/phase.test.cjs, tests/commands.test.cjs,
tests/pattern.test.cjs, tests/adr-612-bracket-coherence.test.cjs,
tests/adr-612-bracket-read-tolerance.test.cjs, tests/milestone-lock.test.cjs,
tests/init.test.cjs, tests/state-todos-render.test.cjs,
tests/quick-batch.test.cjs, tests/graphify.test.cjs, and
tests/effort-surface-axis.test.cjs with a named constant, per
eslint-rules/no-adhoc-timeout-literal.cjs. Removes these 12 files from the
rule's allowlist.

Ground truth via eslint found 25 sites, not the issue's stated 24 (phase.test.cjs
has 5, not 4) -- disclosed in the PR body.

Reuses PROBE_TIMEOUT_MS, GIT_TIMEOUT_MS, and LOOP_HOOK_POINT_CLI_TIMEOUT_MS
across 8 files. Adds two new shared constants to tests/helpers/timeouts.cjs
(each independently arrived at by 2 files in this batch, crossing the
promotion bar): PATHOLOGICAL_INPUT_TEST_TIMEOUT_MS (node:test's own per-test
timeout option, not a subprocess bound) and GSD_TOOLS_CLI_MODERATE_TIMEOUT_MS
(a single gsd-tools.cjs CLI subcommand spawn, distinct tier from
PROBE_TIMEOUT_MS/LOOP_HOOK_POINT_CLI_TIMEOUT_MS). Adds 3 file-local constants
for values used by only 1 file in this batch. No src/bin file touched, no
numeric value changed anywhere.

Co-authored-by: sim <sim@local>
Co-authored-by: Claude Sonnet 5 <noreply@anthropic.com>

eslint-rules/no-adhoc-timeout-literal.allowlist.json

@@ -1,6 +1,4 @@
 [
-  "tests/adr-612-bracket-coherence.test.cjs",
-  "tests/adr-612-bracket-read-tolerance.test.cjs",
   "tests/assumption-delta-checkpoint-e2e.test.cjs",
   "tests/assumption-delta.test.cjs",
   "tests/check-env.test.cjs",
@@ -8,38 +6,28 @@
   "tests/cjs-command-router-adapter.test.cjs",
   "tests/code-review-pipeline-regression.test.cjs",
   "tests/code-review.test.cjs",
-  "tests/commands.test.cjs",
   "tests/config-get-default.test.cjs",
   "tests/dispatcher.test.cjs",
-  "tests/effort-surface-axis.test.cjs",
   "tests/federated-config.test.cjs",
   "tests/gate-predicate-evaluator.test.cjs",
-  "tests/graphify.test.cjs",
   "tests/gsd-check-update-worker-platform-gate.test.cjs",
   "tests/gsd-mcp-server-bin.test.cjs",
   "tests/gsd-statusline.test.cjs",
   "tests/health-validation.test.cjs",
-  "tests/init.test.cjs",
   "tests/locking-bugs-1909-1916-1925-1927.test.cjs",
-  "tests/milestone-lock.test.cjs",
-  "tests/pattern.test.cjs",
   "tests/perf-316-state-lock-buffer-alloc.test.cjs",
   "tests/perf-317-context-monitor-fs.test.cjs",
-  "tests/phase.test.cjs",
   "tests/phase6-capstone-conformance.test.cjs",
   "tests/pi-config-dir-env-override.test.cjs",
   "tests/plan-phase-stall-detection.test.cjs",
   "tests/plan-review-convergence.test.cjs",
   "tests/policy-160-route0-resume.test.cjs",
   "tests/prohibition-enforcement.test.cjs",
-  "tests/quick-batch.test.cjs",
   "tests/review-lane-invocation.test.cjs",
   "tests/reviewer-manifest-body.test.cjs",
   "tests/reviewer-trust-disclosure.test.cjs",
   "tests/run-tests-temp-root.test.cjs",
   "tests/shell-command-projection-dispatch.test.cjs",
-  "tests/state-document.test.cjs",
-  "tests/state-todos-render.test.cjs",
   "tests/task-command-router-resolve-content.test.cjs",
   "tests/task-content-resolution.test.cjs",
   "tests/task-content-resolver-grammar-parity.test.cjs",