chore: clear dead test and allowlist leftovers of dropped runtimes

agents/msd-intel-updater.compact.md

@@ -39,32 +39,9 @@ Spawned by `/msd:map-codebase --query`, which has already confirmed `intel.enabl
 
 ## Project Scope
 
-<!-- Layout detection: only meaningful when analysing the MSD framework's own repo (#3290). -->
-
-**Runtime layout detection (MSD framework repo only):** if `package.json` `"name"` equals `"@golem15/msd-core"`, this project IS the MSD framework — detect the runtime root to choose canonical paths:
-```bash
-if [[ "$(jq -r '.name // ""' package.json 2>/dev/null)" == "@golem15/msd-core" ]]; then
-  ls -d .kilo 2>/dev/null && echo "kilo" || (ls -d .claude/msd-core 2>/dev/null && echo "claude") || echo "unknown"
-fi
-```
-For all other projects, skip this step and go to Step 1.
-
-Use the detected root (when applicable) to resolve canonical paths:
-
-| Source type | Standard `.claude` layout | `.kilo` layout |
-|-------------|--------------------------|----------------|
-| Agent files | `agents/*.md` | `.kilo/agents/*.md` |
-| Command files | `commands/msd/*.md` | `.kilo/command/*.md` |
-| CLI tooling | `msd-core/bin/` | `.kilo/msd-core/bin/` |
-| Workflow files | `msd-core/workflows/` | `.kilo/msd-core/workflows/` |
-| Reference docs | `msd-core/references/` | `.kilo/msd-core/references/` |
-| Hook files | `hooks/*.js` | `.kilo/hooks/*.js` |
-
-When analyzing this project, use ONLY the canonical source locations matching the detected layout — do not fall back to standard layout paths if `.kilo` is detected (those paths will be empty, producing semantically empty intel).
-
 EXCLUDE from counts/analysis: `.planning/` (planning docs, not project code); `node_modules/`, `dist/`, `build/`, `.git/`.
 
-**Count accuracy:** when reporting component counts (stack.json, arch-decisions.json), always derive counts by running Glob on the layout-resolved canonical locations, never from memory or CLAUDE.md. E.g. standard: `Glob("agents/*.md")`; kilo: `Glob(".kilo/agents/*.md")`.
+**Count accuracy:** when reporting component counts (stack.json, arch-decisions.json), always derive counts by running Glob on the canonical source locations (agents, commands, hooks, workflows), never from memory or CLAUDE.md. E.g. `Glob("agents/*.md")`.
 
 ## Forbidden Files
 NEVER read or include in output: `.env` files (except `.env.example`/`.env.template`); `*.key`, `*.pem`, `*.pfx`, `*.p12`; files with `credential`/`secret` in their name; `*.keystore`, `*.jks`; `id_rsa`, `id_ed25519`; `node_modules/`, `.git/`, `dist/`, `build/` directories. If encountered, skip silently — do NOT include contents.

agents/msd-intel-updater.md

@@ -57,40 +57,14 @@ The /msd:map-codebase --query command has already confirmed that intel.enabled i
 
 ## Project Scope
 
-<!-- Layout detection: only meaningful when analysing the MSD framework's own repo (#3290). -->
-
-**Runtime layout detection (MSD framework repo only):** If `package.json` `"name"` equals `"@golem15/msd-core"`, this project IS the MSD framework. In that case, detect the runtime root to choose canonical paths:
-
-```bash
-# Only run layout detection when analysing the MSD framework repo itself.
-if [[ "$(jq -r '.name // ""' package.json 2>/dev/null)" == "@golem15/msd-core" ]]; then
-  ls -d .kilo 2>/dev/null && echo "kilo" || (ls -d .claude/msd-core 2>/dev/null && echo "claude") || echo "unknown"
-fi
-```
-
-For all other projects, skip this step and proceed directly to Step 1.
-
-Use the detected root (when applicable) to resolve all canonical paths below:
-
-| Source type | Standard `.claude` layout | `.kilo` layout |
-|-------------|--------------------------|----------------|
-| Agent files | `agents/*.md` | `.kilo/agents/*.md` |
-| Command files | `commands/msd/*.md` | `.kilo/command/*.md` |
-| CLI tooling | `msd-core/bin/` | `.kilo/msd-core/bin/` |
-| Workflow files | `msd-core/workflows/` | `.kilo/msd-core/workflows/` |
-| Reference docs | `msd-core/references/` | `.kilo/msd-core/references/` |
-| Hook files | `hooks/*.js` | `.kilo/hooks/*.js` |
-
-When analyzing this project, use ONLY the canonical source locations matching the detected layout. Do not fall back to the standard layout paths if the `.kilo` root is detected — those paths will be empty and produce semantically empty intel.
-
 EXCLUDE from counts and analysis:
 
 - `.planning/` -- Planning docs, not project code
 - `node_modules/`, `dist/`, `build/`, `.git/`
 
 **Count accuracy:** When reporting component counts in stack.json or arch-decisions.json, always derive
-counts by running Glob on the layout-resolved canonical locations above, not from memory or CLAUDE.md.
-Example (standard layout): `Glob("agents/*.md")`. Example (kilo): `Glob(".kilo/agents/*.md")`.
+counts by running Glob on the canonical source locations (agents, commands, hooks, workflows), not from memory or CLAUDE.md.
+Example: `Glob("agents/*.md")`.
 
 ## Forbidden Files