Commit Graph

25 Commits

Author SHA1 Message Date
Tom Boucher
09b535ac00 feat(#2481): add a negotiated effortSurface axis and wire invocation-time effort
ADR-1239 gains a ninth negotiated axis, effortSurface (argv | none), declaring how
a host accepts reasoning effort. ADR-443 is amended in the same change because its
recorded deferral is what the axis resolves: its Unblock condition offered paths
(a) and (b) and stated the choice was 'a maintainer call this file records but does
not make'. Path (a) is selected and satisfied here.

Before this, effort reached a runtime only through install-time channels
(EFFORT_RENDERING's frontmatter/api), so reviewer CLIs spawned as subprocesses
silently inherited whatever effort sat in the user's own global CLI config. The
review lane now resolves one universal effort through the ADR-443 cascade and
renders it per host through the negotiated descriptor.

Every per-host value is documentation-sourced, never inferred:
- claude   argv  -- verified via 'claude --help' (--effort <level>)
- opencode argv  -- verified via 'opencode run --help' (--variant)
- codex    argv  -- codex-rs/exec/src/cli.rs: model_reasoning_effort is NOT a CLI
                    flag (config.toml key only), so the global -c override is the
                    only argv route
- 15 hosts undocumented -- their docs state no reasoning setting; the sentinel
                    fails closed rather than inheriting a profile baseline

No config-file vocabulary member: the only host that ever had one (Gemini CLI's
thinkingConfig) was removed as a sunset runtime by 8f2ebbe9b (#1928, PR #1996),
and neither Antigravity CLI nor ZCode documents a reasoning setting.

Closes #2481

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-21 19:10:22 -04:00
Tom Boucher
be5113abfe fix(#2408): fold colliding phase statuses + add W023 collision warning (#2461)
* fix(#2408): fold colliding phase statuses + add W023 collision warning

Two coupled bugs from #2408:

1. cmdStats last-write-wins status (src/commands.cts:1610-1618): when two
   on-disk phase directories normalize to the same phase key (e.g.
   `05-real/` and `05-real-stray/`), the directory-scan merge overwrote
   `status` with whatever the *current* directory in scan order computed,
   discarding `existing?.status` entirely. fs.readdirSync order is not
   stable across platforms, so /gsd-stats could silently report `Not
   Started` for a phase that is actually `Complete`. Plan/summary counts
   were already additively merged; only `status` was wrong.

   Fix: introduced a `foldPhaseStatus(a, b)` helper that returns whichever
   status is further along the precedence ladder
   `Complete > Needs Review > Executed > In Progress > Planned > Not Started`
   (with `Pending` and unrecognized statuses ranked after). The merge site
   now calls `existing ? foldPhaseStatus(existing.status, status) : status`.
   The fold is commutative, so the result is identical regardless of read
   order.

2. cmdValidateHealth had no collision-detection pass (src/verify.cts):
   codes W001-W022 cover every condition except normalized-key collisions,
   so an operator got zero signal that anything was wrong.

   Fix: added W023 — groups phaseDirEntries by their normalized phase key
   (via the existing normalizePhaseName + extractPhaseToken helpers from
   phase-id.cjs — same normalization cmdStats uses) and emits a warning
   for any group with ≥2 dirs. The warning names the normalized key, both
   directory names (sorted by comparePhaseNum for stable output), and each
   directory's independently-computed status (via determinePhaseStatus
   imported from commands.cjs). Wording is deliberately neutral — never
   guesses which directory is the real one. The optional --repair path
   from the issue is intentionally NOT implemented in this PR (the issue
   marked it lower priority and acceptance criterion 4 is vacuously
   satisfied by omission).

Triage correction applied: the issue proposed W022, but that code is
already in use for config.json model-tier validation (src/verify.cts
:1372-1391). The next free code is W023, used here.

Tests:
- tests/commands.test.cjs: integration test that 05-real/ (Complete) +
  05-real-stray/ (empty/Not Started) collide and stats reports the merged
  phase as Complete regardless of read order; plus a direct unit test of
  foldPhaseStatus asserting commutativity + correct precedence for every
  status pair + correct handling of unrecognized statuses.
- tests/health-validation.test.cjs: integration test that W023 fires on
  the collision naming both dirs + their statuses (and uses neutral
  wording), plus a negative test that no W023 fires when only one dir
  exists per key.

References: #2408; reporter's three-layer triage + acceptance criteria;
triage correction that W022 is already in use (model-tier validation).

* chore(#2408): backfill pr:2461 in .changeset/graceful-koalas-forage.md
2026-07-20 15:49:57 -04:00
Tom Boucher
455ad49ae3 feat(#2296): config-gated provider escalation on quota-exceeded (#2458)
* test(#2296): failing-first coverage for provider escalation on quota-exceeded

Covers the provider-escalation ladder layered onto EXEC.CLASSIFY: back-compat
(no escalation block without --failure-class), cap boundaries at
min(max_escalations, list length) at limit-1/limit/limit+1, opt-in gating,
malformed/hostile provider_escalation config, the --failure-class CLI negative
matrix, config-key registration, and a fast-check budget-limit property.

Red until the resolver, CLI flag, and manifest key land.

Refs #2296

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* feat(#2296): config-gated provider escalation on quota-exceeded

The dynamic_routing tier ladder escalates within one provider, which does not
help when that provider is what ran out of quota. Add an opt-in provider ladder
layered on the existing EXEC.CLASSIFY seam.

- model-resolver: resolveProviderEscalation walks dynamic_routing.provider_escalation
  capped at min(max_escalations, list length), reporting from/to/attempted/exhausted.
  Invalid entries are dropped (ADR 227 shape validation). Stays a leaf module —
  the quota-class policy decision is the caller's, per the CONTEXT.md contract.
- agent-command-router: export a frozen AGENT_FAILURE_CLASSES so the new CLI
  validator cannot drift from the classifier that produces the values.
- resolve-execution: --failure-class flag; emits an escalation block ONLY when
  passed, so the existing JSON contract is byte-identical for every caller.
- config-schema.manifest: register dynamic_routing.provider_escalation.
- execute-phase step 7.1: auto-escalate, honor Retry-After, fail loudly naming
  every model tried once the ladder is spent.

Refs #2296

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#2296): extract quota recovery to a reference fragment; regen goldens

The step 7.1a addition pushed gsd-core/workflows/execute-phase.md from 93390 to
95111 LF bytes, past the frozen ADR-857 Phase 6 ceiling (hard <93600, margin
<=93400) asserted by tests/fix-2285-claude-orchestration-wiring.test.cjs. The
base sat 10 bytes under the margin, so no inline wording would have fit.

That gate's own rationale is that optional-feature detail belongs in a fragment,
not the host loop. Moved BOTH the new provider-escalation branch and the
pre-existing manual recovery prompt into
gsd-core/references/execute-phase-quota-recovery.md, leaving step 7.1 as a
one-line pointer. execute-phase.md is now 92880 bytes — 510 SMALLER than base.

Also regenerates the fixtures that legitimately moved because three shipped
files changed (gsd-tools.cjs, config-schema.manifest.json, execute-phase.md):
golden-install-parity + install-tree for all 16 runtimes, INVENTORY.md +
INVENTORY-MANIFEST.json for the new reference, and the workflow size baseline.

Refs #2296

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* test(#2351): make the C1 orphan-reaping test load-independent

tests/run-with-timeout.test.cjs C1 asserted the child heartbeat file exists
after a 1s group-kill window, but the child only wrote it on the first 100ms
setInterval tick. Nothing synchronized the two: on a loaded container the group
is SIGKILLed before that tick lands, the file never appears, and the assertion
fails for a reason unrelated to reaping. Observed failing on both linux-node22
and linux-node24.

The behavior actually under test is the FREEZE assertion (heartbeat stops
advancing => descendant was reaped, not orphaned). That is unaffected by
sampling once more at t=0.

Child now writes its first heartbeat synchronously at startup before arming the
interval, and the kill window widens 1s -> 3s to cover child boot under load.
Both remove the timing dependency; neither weakens what the test proves.

Refs #2296

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#2296): backfill pr:2458 in .changeset/rapid-jays-bark.md

* chore(#2296): regenerate fixtures after rebase onto #2402

The rebase conflicted on the generated golden-install-parity fixtures and
workflow-size-baseline.json because #2402 (b6e6a22fc) regenerated the same
artifacts. Conflict resolution picked a side to unblock the rebase; a true
regeneration on the combined tree then produced further drift, confirming the
resolved content was stale and would have dropped #2402's fixture changes.

Regenerated goldens, install-tree, size baseline, and INVENTORY-MANIFEST from
the merged tree. docs/INVENTORY.md keeps BOTH new reference rows.

execute-phase.md is 92782 LF bytes with both #2402's and this PR's extractions
applied — under the frozen ceiling (hard <93600, margin <=93400).

Refs #2296

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-20 14:59:30 -04:00
Tom Boucher
b0f672f88c fix(#2337): capture and surface todo severity (#2381)
add-todo.md gains a confirm-based infer_severity step (infer from the blocker/major/minor/cosmetic taxonomy, confirm via AskUserQuestion with TEXT_MODE fallback, before writing) and a severity frontmatter field. cmdListTodos and cmdInitTodos now surface severity, backward-compatible (key omitted when absent), in parity.

Closes #2337. Admin-merged (self-review bypass) with full green CI.
2026-07-17 14:01:38 -04:00
Tom Boucher
a30fb75b51 fix(#2068): dynamic routing escalates the model per --attempt (#2334)
* fix(#2068): dynamic routing escalates the model per --attempt, not just effort

cmdResolveExecution resolved the model via resolveModelInternal (which ignores
dynamic_routing), so retries escalated effort but the model stayed pinned to the
default tier. Resolve the model via resolveModelForTier when --attempt is given,
gated identically to the effort resolution so model and effort stay symmetric —
an omitted --attempt keeps the classic profile model (unchanged for everyone,
incl. dynamic_routing users who don't pass --attempt). Escalation is capped at
max_escalations. Falls back to resolveModelInternal when dynamic_routing is off.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* docs(#2068): backfill PR number 2334 into changeset

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-07-16 15:25:19 -04:00
Tom Boucher
c1885df9e5 chore(#2143): prohibition-with-teeth + migrate remaining ad-hoc table sites — Phase 4 (final) (#2253)
* chore(#2143): prohibition-with-teeth + migrate remaining table sites — Phase 4

Phase 4 of epic #2143 (ADR-2143 §7). Completes the markdown table/mutation
consolidation by (a) giving the ad-hoc-parsing prohibition teeth and (b)
migrating the last ad-hoc table sites onto the shared seam.

- src/markdown-table.cts: new formatting-preserving `updateTableCell` primitive
  (self-contained, ragged-row-tolerant header/delimiter/cell-range scan; splices
  only the target cell's raw span, preserving all other bytes incl. padding/CRLF;
  no-op-preserves-padding when a transformer returns the current value). Exports
  splitTableRow/isDelimiterRow/findTableStartOffset for tolerant reuse.
- eslint-rules/no-adhoc-markdown-parsing.cjs: TABLE-REGEX detector extended to
  `new RegExp(<literal|static-template>)`; new `.replace()`-mutation detector for
  roadmap/state/content receivers with a table/section-shaped pattern.
- scripts/lint-table-schema-drift.cjs (wired into lint:ci): fails if a TABLE_SCHEMA
  header drifts from its authored table; tests import its logic (single source).
- Migrated onto the seam (behaviour-preserving vs pre-Phase-4 HEAD, verified
  byte-diff old-vs-new): roadmap.cts cmdRoadmapUpdatePlanProgress, phase.cts
  cmdPhaseComplete + traceability, milestone.cts cmdRequirementsMarkComplete,
  uat.cts read path, state.cts metrics/decisions/By-Phase.
- Incidental correctness gains from the migration: a decoy table can no longer
  swallow a phase-progress update (## Progress scoping); a ragged neighbouring
  row no longer silently aborts an edit; completing integer phase N no longer
  touches a decimal sub-phase N.x row; record-metric no longer drops trailing
  section content or duplicates the ## Performance Metrics section.
- Kept justified allow-adhoc-markdown markers only where genuinely not a table
  (security.cts <|role|> token) or a loose non-GFM section (uat human-verify).

Two orthogonal isolated reviews (correctness/adversarial + security) passed;
correctness found 4 behaviour regressions in the first migration pass, all fixed
and re-verified byte-identical-or-better vs OLD.

Surfaced for maintainer (pre-existing, ambiguous domain logic, NOT changed here):
templates/state.md places a By-Phase table under ## Performance Metrics while
cmdStateRecordMetric assumes a Plan|Duration|Tasks|Files table.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#2143): match traceability row by first-cell value, not Requirement header

Phase 4's migration matched the REQUIREMENTS.md traceability row by a column
literally named `Requirement` (`row['Requirement']`), but real tables head that
column `REQ-ID`. The by-name lookup found nothing, so `phase complete` and
`requirements mark-complete` left the Status cell `Pending` (regressed #2769 /
#2203, caught by gsd-test — 8 failures, both node 22/24).

- src/phase.cts, src/milestone.cts: match the row by its FIRST cell's value
  (the requirement-ID column) regardless of that column's HEADER name, via
  `Object.values(row)[0]` (updateTableCell builds the record in header order).
  This mirrors OLD's first-cell `\|\s*<id>\s*\|` anchor, restoring header-name
  independence while keeping the seam.
- src/milestone.cts hasTable: broadened from `Requirement`-only to also
  recognize `Requirement ID` / `REQ-ID` / `REQ ID` headers, kept in sync with
  the now-positional rowMatch/hasRow so a REQ-ID-headed table participates in
  the ADR-2143 §6 write-set and the #2140 table_unmatched drift check (it was
  silently omitted before — a checkbox-only partial reconcile against a REQ-ID
  table could report as fully reconciled). The `Requirement`-headed path is
  byte-identical to OLD.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* test(#2143): replace stale structural milestone guards with behavioural suite

The `milestone.cjs regex global state fix` block was a source-structure guard
(allow-test-rule: structural-regression-guard) — it readFileSync'd the compiled
milestone.cjs and asserted removed regex idioms (`tablePattern.test`,
`afterTable !== reqContent`, `doneTable = new RegExp(...)`). Phase 4's migration
deleted those regexes (table update is now updateTableCell), making the
assertions obsolete. Per the Test Cleanup rule, replace them in-PR with a
behavioural suite driving the compiled CLI:

- multi-ID mark-complete flips all IDs (guards the lastIndex/global-state class),
- Pending->Complete flip under both `REQ-ID` and `Requirement` headers (#2769),
- idempotent already_complete detection with no corruption,
- REQ-ID-headed table participates in write_set (traceability entry, applied),
- REQ-ID-headed table trips #2140 table_unmatched drift on a missing row.

Pruned the now-nonexistent structural-regression-guard entry from the
lint-allow-test-rule-refs allowlist (the source-text-is-the-product entry for
the same file remains valid).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(changeset): backfill PR number 2253

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#2143): record-metric targets its own metrics table, not By-Phase velocity

`state record-metric` appended its per-plan row (`| Phase 1 P1 | 5min | 3 tasks |
4 files |`) into the FIRST table under `## Performance Metrics` — which on a real
template-derived STATE.md is the By-Phase velocity table `| Phase | Plans | Total
| Avg/Plan |`, polluting it on EVERY plan completion (execute-plan.md:414 is a
per-plan call). The command's own metrics table is `| Plan | Duration | Tasks |
Files |`, which the template does not ship, so the row never reached it; the
scaffold branch also emitted a wrong `| Phase | Plan | Duration | Notes |` header
matching neither the row nor the canonical table.

Pre-existing (predates Phase 4); surfaced while migrating this site and fixed here
per no-defer, on the user's explicit go-ahead.

- src/state.cts cmdStateRecordMetric: locate the metrics table by its own header
  shape (`Plan|Duration|Tasks|Files`, via splitTableRow/isDelimiterRow) rather
  than "first table in the section". When the section exists but has no metrics
  table (only the By-Phase table), self-heal by appending a fresh **Per-Plan
  Metrics:** table to the END of the section body — By-Phase table, Recent Trend
  and footer preserved verbatim, no duplicate `## Performance Metrics` heading,
  created stays false. Absent-section scaffold header corrected to the canonical
  `| Plan | Duration | Tasks | Files |`. Ragged-tolerance + None-yet preserved.
- Not touching templates/state.md (golden-install-parity hashed) — record-metric
  self-creates the table on first use instead.

Failing-first regression test (tests/state.test.cjs) demonstrates the By-Phase
pollution on the pre-fix build, then green after. Verified: no pollution, self-
heal idempotency, both-tables isolation, content/heading preservation, flags,
None-yet, corrected scaffold header (23-check adversarial harness + all existing
record-metric scenarios).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* feat(#2143): deleteSection seam primitive (level-bounded whole-section removal)

ADR-2143 §4 shipped withSection/collectSection (replace a section BODY) but no
way to DELETE a section (heading + body). Phase 4 suppressed the phase-remove
section delete instead of building it. deleteSection(content, predicate, opts)
locates the section via the collectSection machinery and splices out from the
heading's start offset to the next same-or-higher-level heading — so a level-3
`### Phase N` delete stops at a following level-2 `## Progress`, never past it.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#2143): phase remove no longer deletes ## Progress on last-phase removal

updateRoadmapAfterPhaseRemoval deleted a `### Phase N` detail section with a
greedy raw regex whose lazy scan, on the LAST phase, ran to EOF and destroyed
the following `## Progress` heading and its entire tracking table — silent data
loss, uncovered by tests (removal tests only exercised a middle phase). Migrated
onto the new deleteSection seam (level-bounded, stops at `## Progress`); dropped
the allow-adhoc-markdown SECTION-DELETION suppression. Failing-first regression
(tests/phase.test.cjs) removes the LAST phase and asserts the ## Progress heading
+ table survive; middle-phase removal is byte-identical.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* feat(#2143): deleteTableRow seam primitive (row removal, ragged-tolerant)

Sibling of updateTableCell: locates the first GFM table, matches a DATA row by
predicate (ragged-tolerant record build, header order), and splices out that
row's whole line preserving every other byte. Returns {ok:false,reason} on no
table / no match. Enables migrating the phase-remove Progress-table row delete
off its ad-hoc regex (ADR-2143 §7 — the "future row-delete seam" Phase 4 punted).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#2143): phase remove deletes the Progress row via deleteTableRow

The Progress-table row delete used a whole-document regex with two defects:
(a) `\.?\s` required whitespace after the phase number, so a COMPACT row
`|2|Beta|` was never deleted (stale row left behind); (b) unscoped — it could
strike a row in a different table (e.g. an earlier `| Phase | Requirements |`
table). Migrated onto deleteTableRow, scoped to the `## Progress` section
(mirrors deriveProgressFromRoadmap), matching the row by first-cell phase number
(integer zero-pad-insensitive; decimal exact; removing `2` never touches `2.5`).
Both allow-adhoc-markdown suppressions removed. New behavioural tests: compact
unpadded row deleted; padded byte-parity on the surviving rows (their ordinal
correctly renumbers via the pre-existing renumber block).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#2143): deleteTableRow leaves no dangling newline on last EOL-less row

Deleting the final row of a table with no trailing EOL sliced from the row's
start to end-of-string, stranding the newline that terminated the previous line.
Back rowStart over the preceding \r?\n in that branch so the table ends cleanly.
(Caught by the primitive's own unit test on gsd-test; local scenario checks
missed the no-trailing-EOL edge.)

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#2143): migrate read-only section-collects onto collectSection

Six hand-rolled `## Section` read-extract regexes replaced by the collectSection
seam (behaviour-preserving; extracted bodies feed the same downstream parsers):
state.cts matchSessionSection (## Session / ## Session Continuity) + ## Blockers,
smart-entry.cts ## Blockers, audit.cts ## Current Focus + ## Open Questions.
Removes 6 allow-adhoc-markdown "pending #1372" suppressions. Incidental fix: the
old Session regex `## Session[ \t]*\n` silently failed on a CRLF `## Session\r\n`
heading (Windows STATE.md), nulling all session fields; collectSection is
CRLF-safe, so session state now resolves on Windows.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#2143): fence-safe state-transition section writes + dedup stripFrontmatter

- milestoneCompleteCore's `## Current Position` and `## Operator Next Steps`
  section resets used fence-blind raw regexes that a fenced `##` inside the body
  could truncate/mis-target (#2130/#2067/#2080 class). Migrated onto a
  fence-aware tokenizeHeadings-based helper (resetSectionVerbatim) that is
  byte-identical to the old output on the canonical path (9/9 fixtures) and
  correctly ignores a fenced fake heading (proven robustness gain).
- mutateCurrentPositionFirstTime: hand-rolled locate+splice → collectSection +
  replaceSection (byte-parity).
- stripFrontmatter was inlined byte-identically in state.cts AND
  state-transition.cts; hoisted the single canonical copy into frontmatter.cts
  (both call sites now import it) + unit tests — eliminates the divergence risk
  per CLAUDE.md "Generative Fix Divergence". Removes 3 allow-adhoc-markdown /
  #1372 markers.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#2143): name-address By-Phase sum + uat parse, eslint recall hole, catches

- state.cts By-Phase "Total plans completed" sum: positional 2nd-cell regex →
  name-addressed splitTableRow read (correct on a reordered header, where the
  old code silently summed the wrong column). Marker removed.
- uat.cts parseVerificationItems: loose pipe regex → splitTableRow within the
  existing table/numbered/bullet union scan (item list byte-identical; does NOT
  reintroduce the reverted strict-parseMarkdownTable item-drop). Marker removed.
- eslint no-adhoc-markdown-parsing: close the `new RegExp(identifier)` recall
  hole — resolve a const-declared table-shaped regex identifier (mirrors the
  .replace() detector) + RuleTester cases; param/call args stay out (boundary).
- commands.cts: delete a lying comment that claimed the scaffold date "stays on
  raw UTC / deferred" — #2136 already moved it to realClock.localToday().
- Empty catches (classified, not blind-swept): removed 4 dead try/catch;
  fixed 3 error-hiding (phase-insert decimal-dir I/O collision now fails loud;
  phase-remove rename partial-failure surfaced; milestone-archive true count via
  finally); left best-effort swallows with justification comments.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#2143): extractFencedBlock seam + migrate api-coverage named fence

parseCoverageMatrix extracted its ```coverage fenced block with an ad-hoc regex
(the last real allow-adhoc-markdown suppression). Added extractFencedBlock to the
markdown-sectionizer seam (reuses stripFencedCode's CommonMark fence engine —
info-string match, ~~~/backtick, nesting, indent) and migrated onto it; byte-
parity on the parsed CoverageMatrix across 8 fixtures. Only security.cts:367
(a genuine `<|role|>` protocol-token false-positive, not a GFM table) remains
marked in src/ — the "prohibition with teeth" goal (nothing grandfathered but a
true FP) is met.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#2143): By-Phase row insert is name-addressed (insertTableRow seam)

updatePerformanceMetricsSection's INSERT-new-row branch located the By-Phase
table with a canonical-column-order-only regex + a hardcoded positional row
literal, so on a reordered header it silently inserted nothing — inconsistent
with the now name-addressed UPDATE and SUM halves of the same function. Added
insertTableRow (markdown-table seam sibling of updateTableCell/deleteTableRow:
name-addressed, header-order-agnostic, EOL-preserving) and migrated the branch
onto it, mapping By-Phase values by column NAME. Canonical-order output is
byte-identical; a reordered header now inserts a correctly-mapped row; a
pre-existing CRLF mixed-EOL splice glitch is incidentally fixed. Retired the
now-dead byPhaseTablePattern const.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#2143): phase-list checkbox flip via updateBullet seam

Added updateBullet (markdown-sectionizer): a fence-aware, offset-tracked
single-bullet write primitive (GFM 1–4-space marker tolerance) — the write
counterpart to read-only iterateBullets. Migrated mutateMilestonePhase's
phase-list checkbox flip (`- [ ] Phase N …` → `- [x] … (completed <date>)`)
off its whole-slice regex onto it, same milestone-slice scope + clock seam.
Byte-identical across simple / idempotent / metachar-title / double-space /
CRLF scenarios.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#2143): scope the Progress-ordinal renumber to ## Progress via seam

phase remove's integer-renumber decremented Progress-table phase ordinals with a
whole-document `content.replace(/(\|\s*)(\d+)(\.\s)/g, …)` — unscoped, so it also
rewrote any `| N. …` cell in an unrelated/decoy table (same class as the batch-2
row-delete scoping bug). Migrated onto updateTableCell, scoped to the ## Progress
section, decrementing each affected row's leading phase ordinal by column name.
Byte-identical on canonical Progress tables + multi-row + decimal-sibling cases;
a decoy `| 3. … |` row before ## Progress is now correctly left untouched. The
sibling heading / checkbox-bullet / PLAN.md-filename / Depends-on-prose renumbers
are not GFM-table mutations (outside ADR-2143's table/section mandate) — left as-is.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#2143): review fixes — scope traceability write, restore Current Position H3-stop

Adversarial review of the remediation (BLOCK verdict) — all 9 findings fixed:
- F1 (BLOCKER): requirements mark-complete / phase complete flipped the checkbox
  but NOT the traceability row on the shipped template, because updateTableCell
  bound to the FIRST table (## Out of Scope, no Status column) instead of the
  ## Traceability table — the #2140 silent-divergence class, re-introduced by the
  seam migration and missed by tests (fixtures had Traceability first). Scoped
  the write + hasRow probe to the ## Traceability section slice (updateTraceability
  Cell helper) in milestone.cts + phase.cts. Failing-first tests on the
  Out-of-Scope-before-Traceability layout; the #2769 first-cell match preserved.
- F2 (MAJOR): mutateCurrentPositionFirstTime restored to locateCurrentPosition
  (STOP_H2_PLUS) — collectSection's default H2-stop swallowed a level-3 subsection
  and the field regexes clobbered it (#2130 class).
- F3/F8: Progress-ordinal renumber re-escapes via escapeCell + keys padding
  recovery by row index (was de-escaping `\|` and losing padding on dup values).
- F4: insertTableRow escapes cell values internally.
- F5: updateBullet accepts a tab after the marker (`[ \t]{1,4}`).
- F7: resetSectionVerbatim consumes CRLF blank lines (byte-parity on CRLF).
- F6/F9: corrected two misleading comments.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(changeset): data-loss + CRLF-session user-facing fixes (#2253)

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* test(#2143): de-flake the G10 windsurf ReDoS-guard wall-clock assertion

The G10 test asserted `elapsedMs < 1000` for a 200k-char payload — a wall-clock
assertion (CLAUDE.md: never assert on wall-clock time) that flaked on a loaded
node24 bench at ~1.1s. It was redundant: runHook's spawnSync `timeout: 10000`
already SIGKILLs a catastrophic-backtracking hook, so the exit-0 assertion is the
real ReDoS guard. Removed the timing assertion; kept exit-0 + documented the
subprocess-timeout mechanism. Surfaced (not caused) by this branch's gsd-test
runs loading the bench; unrelated to the markdown-parsing changes but fixed in
place per the no-flaky-tests rule.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-14 14:25:44 -04:00
Tom Boucher
4bb846b67a fix(#2112): scope commit to --files pathspec, not entire index (#2148)
* fix(2112): scope commit to --files pathspec, not entire index

cmdCommit/cmdCommitToSubrepo/cmdPrSubrepo staged exactly the files
named in --files but then ran a bare 'git commit' with no pathspec,
absorbing anything else in the index into a commit whose message
described only the named files (#2112).

Fix: append '-- ...stagedPaths' to the commit args when the caller
declared a scope. Three guards are load-bearing:
- stagedPaths (not filesToStage) excludes skipped missing files (#2014)
- explicitFiles gate keeps the default .planning/ path byte-identical
- MERGE_HEAD check via 'git rev-parse' falls back to bare commit during merge
- --amend is left without pathspec (different operation)

cmdPrSubrepo pathspec uses changedFiles (old+new for renames) so the
full rename is captured atomically.

Also fixes workflow markdown in spec-phase.md and add-tests.md.

All-files-missing now short-circuits to nothing_to_commit instead of
absorbing the entire index under a message describing files that
were not committed.

* docs(changeset): backfill PR number (#2148)

* test: update golden-install-parity fixtures for workflow markdown changes (#2112)

* test: update golden fixtures + workflow baselines for #2112 changes

- claude-local.json golden fixture (now generated via gen script)
- workflow-size-baseline.json (add-tests.md +16, spec-phase.md +42 bytes)
- Extended gen-golden-install-parity-zcode.cjs to also regenerate the
  claude local-layout fixture
2026-07-13 00:21:46 -04:00
Tom Boucher
58b20c31f8 fix(#2136): migrate ALL operator-facing date sites to localToday (anti-pattern elimination)
The UTC-slice anti-pattern (deriving a calendar day a human reads by slicing a
UTC instant) remained in several operator-facing sites beyond the original
seamed last_activity set. Eliminate it everywhere a human reads the value as a
calendar day — do not leave known bad code in place:

- commands.cts cmdTodoComplete + cmdScaffold: completion/scaffold dates.
- gsd2-import.cts: migrated STATE.md 'Last activity' / 'Last session'.
- template.cts: plan frontmatter 'completed:' date.
- verify.cts: health --repair session-log date + '(Backfilled: <date>)' header.
- workstream.cts: workstream-create 'Last Activity' / 'created' + archive dirname.
- init.cts: JSON-bundle 'date' (-> localToday) + 'timestamp' (-> nowIso) at all
  three sites; drop the now-dead 'const now = new Date()' in cmdInitTodos /
  cmdInitMapCodebase (cmdInitQuick keeps it for the local branch-id derivation).
- state.cts: prune-archive '## Pruned <date>' header.
- state-transition.cts: the 7 seamed last_activity writes (prior commit).

No realClock.today() / .clock.today() / raw new Date().toISOString().split('T')
operator-facing sites remain in src/. Rebuilds the tracked
bin/lib/state-transition.cjs artifact to match.
2026-07-12 15:34:59 -04:00
Tom Boucher
71edb27fe1 fix(#2136): route operator-facing date fields through local clock day
clock.today() derived the calendar day by slicing a UTC ISO instant
(nowIso().split('T')[0]), so in any negative-UTC-offset zone during UTC's early
hours last_activity named a day the operator had not reached yet — ahead of
last_updated's local date, written by the same call.

- Add Clock.localToday(): host-local YYYY-MM-DD via getMonth/getDate/
  getFullYear, honoring the same GSD_NOW_MS pin as today()/nowIso().
- Route operator-facing date-only fields through localToday(): last_activity
  (state-transition ×7, state.cts), roadmap 'completed <date>' (phase.cts,
  roadmap.cts), milestone completion date (milestone.cts), todo/scaffold
  completion (commands.cts — now threaded through the realClock seam).
- Leave today() (UTC) as the source for internal/cosmetic stamps.

Closes #2136
2026-07-12 15:34:59 -04:00
Tom Boucher
2f6662d195 fix(#2128): bound the remaining lazy-scan ReDoS vectors (files_modified, Plans-count, <tag>)
A ReDoS-completeness audit surfaced a distinct class beyond the tag/bracket
clause: unbounded `[\s\S]*?` / `[^\]]*` lazy-scans searching for a literal
terminator that may never appear, driven quadratic by REPEATED structures in a
large PLAN.md/ROADMAP.md. Folded all 7 in at maintainer direction:

- files_modified `[^\]]*` -> `[^\]]{0,8000}` (commands.cts, verify.cts): 39.7s -> 0.9s.
- Plans-count `[\s\S]*?` -> section-local `(?:(?!\n#{1,4}\s)[\s\S])*?` — stops at the
  next heading (semantically correct: Plans: belongs to the phase's own section)
  (roadmap.cts x3, phase.cts): 36s -> 4ms.
- <tag> extraction `([\s\S]*?)` -> stop at the next same-tag opening
  `((?:(?!<tag>)[\s\S])*?)` (verify.cts x3, markdown-sectionizer.cts): ~6s -> 2ms.

Every vector is now linear (comprehensively re-measured); real content matches
(end-to-end `roadmap get-phase` still resolves Plans-counted phases). Pre-existing;
byte-behavior preserved for realistic inputs.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-10 10:11:43 -04:00
Tom Boucher
b321bc04f4 fix(#2128): bound the sibling bracket-prefix clause — complete the ReDoS fix
Review caught that the prior commit bounded only the paren tag clause and left
the SIBLING bracket-prefix `(?:\[[^\]]+\]\s*)?` (same host regexes, before Phase)
UNBOUNDED — the identical quadratic reachable via a `[...]` run (measured ~16s at
1.7MB). Bound `[^\]]+`/`[^\]]*` -> {1,200}/{0,200} across all 19 phase/milestone
heading prefixes. Comprehensive re-measurement now shows EVERY vector linear
(bracket/paren/id/name/milestone all ~2-44ms at 2.45MB; bracket scaling
2k->2ms, 4k->5ms, 8k->10ms). Also: update the #1729 literal-mirror parity test
off its stale unbounded constant, and add limit-1 (199) boundary coverage.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-10 09:44:49 -04:00
Tom Boucher
c1cd43a39f fix(#2128): bound the phase-tag clause to {0,200} — kill quadratic ReDoS
The canonical OPTIONAL_PHASE_TAG_SOURCE tag clause `(?:\s*\([^)\n]*\))?` (and its
inlined literal mirrors across 11 modules) had an UNBOUNDED body, making the
optional-group + /g header scan quadratic on adversarial ROADMAP.md/STATE.md — a
long run of `(` after a header ran ~18.8s at 1.7MB. Bound the body to {0,200} in
the constant AND every mirror in lockstep (the #1729 "both forms change together"
contract), so the scan is linear: the same 1.7MB input now resolves in ~9ms
(measured), while real tags (a handful of chars) still match and a 201-char tag
is rejected. Added a #2128 boundary regression to the #1729 suite.

Pre-existing (byte-identical before/after the Phase 4 migrations); folded in at
maintainer direction rather than deferred.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-10 09:31:17 -04:00
Tom Boucher
015c3a7fda fix(#2071): extract install-time effort resolvers so effort sync stops requiring the un-shipped bin/install.js
`gsd-tools effort sync` crashed in every installed runtime (e.g. ~/.claude/gsd-core/)
with `Cannot find module '../../../bin/install.js'`: cmdEffortSync (src/commands.cts)
required the package-root bin/install.js for its install-time effort resolvers, but the
installer only copies the gsd-core/ subtree into a runtime home — bin/install.js is never
present there. So `effort` config changes silently never reached installed agents without
a full reinstall (exactly the gap #488 was meant to close). 4th instance of the recurring
"runtime code under gsd-core/ requires a file outside the shipped subtree via ../../../"
anti-pattern (#1223/#1920/#1383 were the prior three, all already mitigated).

Fix (ADR-457 direction — extract, single source): move readGsdEffectiveEffortConfig +
resolveInstallTimeEffort (with their _getGsdEffortCatalog + _readGsdConfigFile helpers)
out of the hand-authored bin/install.js into a new src/install-effort-resolver.cts that
compiles into the shipped gsd-core/bin/lib/install-effort-resolver.cjs. commands.cts now
requires it as a sibling (`./install-effort-resolver.cjs`) — always present in the
installed tree — instead of `../../../bin/install.js`. bin/install.js imports the same four
symbols back from the new module (it still calls them + re-exports them), so there is one
source of truth and no duplication/drift. The lazy manifest read is repointed from the
package-root layout (`.., gsd-core, bin, shared`) to the bin/lib layout (`.., shared`).

Scope note: this is one of four instances of the anti-pattern; the other three are already
shipped/guarded. A build-time guard rejecting new cross-boundary requires whose target isn't
in the installer copy manifest (to prevent instance #5) is recommended on the issue but kept
out of this fix.

Tests: tests/effort-sync-installed-runtime.test.cjs does a real minimal install into a temp
home (the golden-parity helper) and runs the issue's exact repro
(`gsd-tools effort sync --config-dir <temp>`), asserting no MODULE_NOT_FOUND for
bin/install.js. Fail-first verified: against pristine next the same test throws
`Cannot find module '../../../bin/install.js'` at cmdEffortSync; post-fix it syncs cleanly.

New module registered in .gitignore (ADR-457), eslint ignores, docs/INVENTORY.md +
INVENTORY-MANIFEST.json. bin/install.js is not shipped and the new module is under bin/lib
(excluded from golden parity), so no golden fixtures change.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-07 22:21:45 -04:00
Behruz Nassre Esfahani
12b35eeeaf fix(#1729): resolve phase headers with a pre-colon parenthetical tag (#1765)
* fix(#1729): resolve phase headers with a pre-colon parenthetical tag

A phase header may carry a parenthetical tag between the number and the
colon, e.g. `### Phase 26 (Cluster B): Title`. Every phase-header regex
built `Phase\s+<num>` immediately against the colon delimiter, so the
tagged phase was invisible: the resolver returned found:false and, just
as bad, the capture-all enumeration/parse paths (roadmap analyze,
milestone listing + milestone-scope filter, verify, init/import, state
total_phases, validate, the command router, preamble stripping, and the
phase-remove renumbering rewrite) silently dropped, miscounted, or
failed to renumber it — wrong phase_count, progress_percent, next_phase,
or corrupt numbering after a removal.

The fix tolerates the tag at the header seam. Parameterized resolver
sites compose the exported OPTIONAL_PHASE_TAG_SOURCE fragment; literal
enumeration sites inline its character-for-character mirror
`(?:\s*\([^)\n]*\))?`, placed immediately before the colon so it cannot
alter an existing match (optional, single-line, one paren pair, no
capture-group shift). In the renumber-on-removal rewrite the tag is
folded into the re-emitted suffix capture so it survives verbatim. Both
forms are documented to change together and a drift-guard test asserts
their behavioral equivalence over a header corpus.

Deliberately excluded: roadmap-upgrade.cts (legacy one-time migration),
where tolerating the tag would silently drop it on header rewrite — that
needs its own data-preserving treatment. Known boundaries left for
follow-up: checklist/bullet-style phase entries (`- [ ] Phase N (tag):`)
and a malformed space-before-colon variant, both pre-existing.

Validated empirically against the issue's reproduction: `roadmap
get-phase 26` resolves and `roadmap analyze` lists Phase 26 with the tag
excluded from the name (phase_count 2, next 26); an all-tagged versioned
roadmap now scopes correctly instead of falling back to a pass-all
filter. Regression coverage in tests/phase.test.cjs asserts resolver
parity (pre- vs post-colon), padding tolerance (#3537), decimal
sub-phases, no cross-phase false match, the shared seam, enumeration
coherence, renumber-preserves-tag, and seam/mirror drift. Full unit
suite green (7291 pass, 0 fail); eslint + regression-name +
resolution-provenance + changeset lints pass. Reviewed by Codex
(no critical/high; the two enumeration misses it surfaced are folded in).

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* chore(#1729): add changeset for pre-colon phase-tag fix

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-07-02 11:55:44 -04:00
Joe
e12a2abfd8 feat(#441): add /gsd-capture --list-seeds for seed listing and audit (#722)
* feat(#441): add /gsd-capture --list-seeds for seed listing and audit

Seeds (.planning/seeds/SEED-NNN-slug.md) could only be created (--seed),
enriched (--enrich), or auto-surfaced at /gsd-new-milestone. There was no way
to browse or audit parked seeds on demand. This adds a read-only listing,
following the established --list → workflow pattern (per the approved scope on

- gsd-tools `list-seeds [status]` (cmdListSeeds in src/commands.cts): scans the
  seeds dir, returns { count, seeds[], summary } JSON with each seed's id,
  slug, status, scope, trigger_when, planted, title. Optional case-insensitive
  status filter. User-controlled content is sanitized (sanitizeForDisplay) and
  every path validated (requireSafePath); read-only. Independent of
  audit.scanSeeds, which only returns unimplemented seeds for the milestone surface.
- /gsd-capture --list-seeds routes to a new read-only list-seeds workflow that
  renders the seed table.

Closes #441

* chore(#441): point changeset fragment at PR #722

* test(#441): allowlist list-seeds test in prompt-injection scan

The test asserts that list-seeds neutralizes injection payloads
(<system>, [INST]) embedded in seed content, so the fixtures legitimately
contain those patterns — same as the sibling security tests already on the
allowlist.

* fix(#441): use canonical /gsd:capture colon form in list-seeds workflow

Claude-facing source (commands/, agents/, gsd-core/workflows/, ...) must use
the /gsd:<cmd> colon form per ADR/CONTEXT.md; the hyphen /gsd-<cmd> form is
retired there (enforced by bug-2543-gsd-slash-namespace.test.cjs). The new
list-seeds workflow used the hyphen form.

* docs(#441): sync help full.md + INVENTORY for --list-seeds

Adds the --list-seeds entry to the help reference (help/modes/full.md, per
bug-2954 argument-hint↔help parity) and registers the new list-seeds workflow
in docs/INVENTORY.md (88→89) and the generated INVENTORY-MANIFEST.json.

* docs(#441): add --list-seeds how-to + drop phantom statuses

Addresses CHANGES_REQUESTED on PR #722 (two documentation blockers):

- USER-GUIDE.md Seeds section (how-to): extend the task to cover
  auditing parked seeds on demand via --list-seeds, including the
  status filter — kept task-oriented per Diataxis how-to mode.
- CLI-TOOLS.md (reference): drop phantom statuses implemented|rejected
  from the list-seeds filter vocabulary; the system only produces
  dormant|active|triggered (src/audit.cts scanSeeds). Reference must
  be factually accurate and complete.

* fix(#441): guard non-scalar status frontmatter in cmdListSeeds

A seed with a bare `status:` line (extractFrontmatter yields {}) or a
`status: [a, b]` value (yields an array) crashed the whole audit list:
`(fm.status || 'dormant').toLowerCase()` throws a TypeError on a non-string.
Coerce every frontmatter read through a `fmStr` helper (mirrors the existing
`typeof fm.id === 'string'` guard), so a non-scalar status falls back to
dormant and non-scalar scope/trigger_when/title can no longer leak a raw
array/object into the JSON contract. Title is now capped symmetrically.

Adds regression coverage for empty and array `status:` and non-scalar fields.

Refs #441

* docs(#441): align list-seeds workflow status vocabulary

The load_seeds step listed `implemented` as an example status filter, but the
real seed vocabulary is dormant|active|triggered (src/audit.cts scanSeeds);
`implemented` has no producer. Matches the earlier CLI-TOOLS.md correction.

Refs #441

* refactor(#441): extract pure deriveSeedIdentity; match raw status in list-seeds

Pull the seed_id/slug derivation out of cmdListSeeds into a pure, exported
deriveSeedIdentity(stem, rawFmId) so the parsing contract can be property-tested
in-process (review minor #1). No behavior change.

Filter comparison now matches the raw lowercased status (both sides already
normalized) instead of sanitizeForDisplay(status); sanitization is for output,
not matching (review nit #3).

* test(#441): add fast-check property coverage and count=1 boundary for list-seeds

Adds tests/list-seeds.property.test.cjs with four fast-check properties over
deriveSeedIdentity (never-throws, string-only contract, canonical id->seed_id/slug
invariant, filename-prefix fallback) per RULESET.TESTS.property-based-testing
(review minor #1).

Adds an N==1 status-filter boundary case to list-seeds.test.cjs (review minor #2).

* chore(#441): sync runtime launcher snippet into list-seeds workflow

Propagate the current _runtime-launcher.snippet.sh (with non-Claude
runtime home probes) into the new list-seeds.md workflow via
scripts/sync-runtime-launcher.cjs, satisfying bug-891 (E) propagation.

* test(#441): record list-seeds.md in workflow size baseline (#1074)

---------

Co-authored-by: Tom Boucher <trekkie@nomorestars.com>
2026-06-22 00:59:41 -04:00
Enes Yağız
8748e95ed1 fix(#666): pr-branch silently ignored planning.sub_repos (#667)
* fix(pr-branch): handle sub_repos from config with git -C (#666)

Adds a `handle_sub_repos` step between `detect_state` and
`analyze_commits`. When `planning.sub_repos` is set in config, the
workflow now:

- Reads sub-repo paths via `gsd_run query config-get sub_repos`
- Skips the step entirely when the list is empty/null/[]
- Scans each repo with `git -C "$REPO" status --porcelain`
- Offers the user all/select/skip choices
- For selected repos: creates a PR branch, commits all staged/unstaged
  changes, pushes, and opens a companion PR via `gh pr create`

All git commands use `git -C "$REPO"` — never `cd "$REPO"` — because
shell state does not persist between agent-executed commands.

Closes #666

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* chore: update changeset pr number to 667

* fix(pr-branch): address maintainer review — correct seam, behavioral tests, robustness

Resolves all three blockers and seven robustness issues raised in PR #667 review:

Blockers:
- Use `planning.sub_repos` (not top-level `sub_repos`) so config-get actually resolves
- Replace prose grep test with behavioral fixture tests using runGsdTools + local bare repo
- Extract sub-repo git work into new `cmdPrSubrepo` seam in src/commands.cts;
  never uses git add -A — stages explicit files only (universal-anti-patterns.md:44)

Robustness:
- Dirty-repo list persisted via mktemp/cat, not bash arrays (cross-block safe)
- Branch name embeds repo slug (${CURRENT_BRANCH}-${REPO_SAFE}-pr) to avoid collision
- push --set-upstream so gh pr create finds the branch
- Sub-repo base branch resolved via ls-remote with fallback to repo's default branch
- Remote slug parsed with /github\.com[:/]/ (handles SSH + HTTPS + .git-less URLs)
- rollback() cleans up branch on any mid-sequence failure
- node -e replaces jq (always available, no undeclared hard dep)

Refs: #666

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(pr-branch): security guard, push timeout, rollback fix, porcelain fix

Security (Blocker 1):
- Use security.cjs validatePath() in cmdPrSubrepo for symlink-safe workspace
  containment check — rejects ../escape, absolute paths, and symlink traversal
- Add negative regression test: '../escape' repo path must be rejected

Robustness:
- Push uses timeout: 60_000 ms (network op needs more than the 10 s default)
- Capture prevBranchName before checkout -b so rollback uses explicit name
  instead of git checkout - (fails on fresh single-branch repos)
- Porcelain path parse: line.trimStart().slice(2).trim() handles all XY
  combinations and the execGit global-trim edge case uniformly

Tests: 17/17 pass, lint: 0 errors

Refs: #666

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(pr-branch): move regression tests to commands.test.cjs, add core.quotePath=false

- Move cmdPrSubrepo behavioral + workflow source-invariant tests from
  standalone bug-666-*.test.cjs into tests/commands.test.cjs under
  describe('pr-subrepo') per TESTING-SUITES.md policy (no new bug-* files).
  Adds allow-test-rule: source-text-is-the-product see #666 for the
  workflow-source-invariant suite.
- Add -c core.quotePath=false to git status --porcelain call so non-ASCII
  filenames (e.g. café) are not C-escaped, keeping slice(2) parse correct.

* fix(pr-branch): remove obsolete regression tests for sub-repos handling

* fix(pr-branch): update workflow-size-baseline, add dirty-scan timeout

- Regenerate tests/workflow-size-baseline.json for pr-branch.md growth
  (+handle_sub_repos step, +timeout addition).
- Add { timeout: 10_000 } to the execFileSync git status --porcelain
  call in the handle_sub_repos dirty-scan (repo convention: every git
  subprocess is bounded, never hangs).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* chore: regenerate INVENTORY-MANIFEST after rebase onto next

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(#666): handle rename staging and split changedFiles from filesToStage

For git mv renames, the old path no longer exists in the worktree after
the move — staging it with git add fails. Split parsing into changedFiles
(both paths, for result.files) and filesToStage (new path only for
renames; old is already staged by git mv). Also adds porcelain tests
for staged renames, non-ASCII filenames, and a fast-check property test.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(#666): rollback on push failure in cmdPrSubrepo

If push fails the branch only exists locally; rollback cleans it up so
the sub-repo is not left in a half-committed state.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(#666): do not rollback after commit on push failure; add push-fail regression test

Post-commit push failures are network/auth/policy issues — the user's work
is already committed on the local branch. Calling rollback() at that point
force-deletes the only ref holding the commit (data loss). Leave the branch
in place and emit a retry instruction instead.

Adds a regression test (pre-receive hook that rejects all pushes) asserting
the branch and commit survive a push rejection so the failure path stays
covered going forward.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* chore: regenerate INVENTORY-MANIFEST after rebase onto next

Rebased onto current next (#1267 retired core.cjs). Stale tsbuildinfo and
a leftover bin/lib/core.cjs build artifact were masking the drift — wiped
both, rebuilt clean, and regenerated the manifest. gen-inventory-manifest
--check now exits 0.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(#666): validate sub-repo paths before git invocation in pr-branch.md

The handle_sub_repos workflow ran git -C on raw planning.sub_repos config
values at two points before the pr-subrepo seam's validatePath guard ever
ran: the dirty-scan detection (git status) and the base-branch resolution
(git ls-remote / remote show). A traversal entry could point git outside
the workspace; an embedded newline could inject a spurious record into
the newline-joined dirty-file output and into the shell-interpolated
commit message.

Adds a containment check + character allowlist to the dirty-scan node
script (reject before any execFileSync), and a defense-in-depth shell
case guard on the same value before the second, independent git -C
invocation in the base-branch resolution block.

Adds a behavioral test that extracts and executes the actual shipped
node script from pr-branch.md (not a mirror) against a real traversal
target and an embedded-newline entry, asserting neither reaches git or
the dirty-file output.

Also updates the stale cmdPrSubrepo doc comment: push failures no longer
delete the branch (see prior commit), only stage/commit failures do.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* test(#666): make sub-repo traversal scan test genuinely fail-first

The outside repo's only change was an untracked file, which the ?? filter
excludes — so the repo looked clean even with the guard removed, making the
traversal assertion vacuous (it passed against a neutered guard). Commit the
file first, then modify it, so the outside repo has a tracked dirty change:
without the path guard it WOULD be reported dirty, so the test now fails-first.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#666): symlink-safe (realpath) sub-repo containment in pr-branch.md

Finding A from re-review: the workflow guard used path.resolve, which only
normalizes '..' textually and does not follow symlinks — so an in-tree symlink
whose name has no '..' or '/' (e.g. "evil" -> /outside) passed both the charset
filter and the resolve+startsWith check, letting git status / ls-remote /
remote show run against a directory outside the workspace. The pr-subrepo seam
already used fs.realpathSync (validatePath); this brings the workflow layer to
parity.

- dirty-scan: realpathSync the root once, and realpathSync each candidate before
  the containment check; skip on throw.
- base-branch resolution: replace the weak `case *..*|/*` guard with a realpath
  containment check that yields a validated absolute SUB_REPO_DIR, and run git -C
  against that instead of re-concatenating $ROOT/$REPO_REL.
- security test: add a symlink-escape entry and a positive control (legit in-root
  backend must still be reported). Confirmed fails-first — regressing the scan to
  path.resolve makes the symlink case leak.

Also fixes a misleading-fallback minor: the workflow now checks the seam's exit
status and skips the companion-PR step on failure, instead of printing
"branch pushed, open PR manually" after a real stage/commit/push failure.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#666): harden pr-branch sub-repo flow against round-12 edge cases

Pre-emptive hardening of the workflow changes from the symlink fix:

- continue-outside-loop: the "skip companion PR on seam failure" block used a
  bash `continue`, but the per-sub-repo iteration is prose-driven (the agent
  loops, not a literal `for`), so `continue` would warn and no-op. Reframed as
  prose-gated control flow keyed on $SUBREPO_EXIT — no bash loop assumption.
- Windows portability: the new symlink security case now degrades gracefully
  (try/catch around fs.symlinkSync; skip just the symlink assertion when symlink
  creation lacks privileges) so it doesn't hard-fail on Windows CI.

Verified: seam exits 1 on error / 0 on success (error() → process.exit(1),
propagated through the shim), so the $SUBREPO_EXIT check is meaningful; bash -n
clean on the touched blocks; commands 156/156; lint:ci green; manifest in sync.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>
Co-authored-by: Tom Boucher <trekkie@nomorestars.com>
2026-06-21 22:34:00 -04:00
Tom Boucher
645601a10d refactor(#1286): T4 — migrate 5 large destructure callers off the core spine (batch 3) (#1287)
Migrate the entire core surface of commands (~23 symbols), phase (~17),
roadmap, state, template to the leaf modules directly (behaviour-identical —
leaves are the objects core re-exports by reference). All 5 now import zero
core symbols and are removed from the allowlist (9 -> 4). Dropped a dead
`void replaceInCurrentMilestone` from phase.cts; stale core.cjs docstrings
fixed. core.cts re-exports untouched (serve the remaining 4 idiom-hard
files); teardown is T-final. No behaviour change.

Closes #1286

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-06-15 17:03:22 -04:00
Tom Boucher
be132445aa fix(#1159): phase complete ignores historical/deferred requirement metadata (#1197)
* fix(#1159): phase complete ignores historical/deferred requirement metadata

Defect A: `phase complete` emitted a false "has unresolved gaps" warning
when a VERIFICATION.md file's frontmatter contained `status: passed` but
the body contained `previous_status: gaps_found`. The full-text regex
`/status: gaps_found/` matched the substring inside `previous_status:
gaps_found`, producing a spurious warning. Fixed by reading only the
frontmatter `status` key via `extractFrontmatter` in both `phase.cts`
(phase complete warning check) and `commands.cts` (determinePhaseStatus).

Defect B: requirement IDs under explicitly deferred/backlog/future/v2
section headings in REQUIREMENTS.md were flagged as missing from the
Traceability table. Fixed by splitting the body into markdown sections,
detecting deferred-intent headings via a keyword regex, and skipping
those sections when collecting IDs to check against the table.

Both fixes include boundary tests (false positive suppressed; genuine
gap/missing warnings still fire) in 4-phase-complete-cjs-regression.test.cjs.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(#1159): address adversarial-review findings (subheading + case sensitivity)

- Defect B: Replace section-split approach with line-by-line depth-tracking
  to correctly propagate deferred status to sub-headings and ignore headings
  inside fenced code blocks. Previously `## Future Backlog` / `### Sub` would
  leak sub-heading IDs (split created a new non-deferred section per heading).
- Defect A/commands: restore case-insensitive status matching via toLowerCase()
  to match the prior /status:\s*passed/i regex semantics.
- Add test #1159-B-4 covering the nested-subheading case.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* docs(changeset): backfill PR number for #1159 fix

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-14 00:00:37 -04:00
Tom Boucher
1d90ad3c30 fix(commands): route nested sub_repos by longest prefix, not array order (#1130)
groupFilesBySubrepo selected the first sub_repos entry in array order
whose prefix matched a file, so a file under a more-specific nested
sub-repo (e.g. packages/core/widget.js with sub_repos
["packages", "packages/core"]) was mis-routed to the less-specific
parent ("packages").

Select the longest (most-specific) matching prefix within each
first-segment bucket instead, making routing independent of sub_repos
array order. String()-guard the length comparison so non-string entries
still never throw (preserves the #311 tolerance). Update the stale doc
comment that claimed first-match semantics.

Closes #391.

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-06-12 17:33:26 -04:00
Tom Boucher
cb2cda1865 fix(#904): normalize phase number in init.execute-phase branch_name (#909)
Wrap the {phase} substitution in normalizePhaseName() at both fix sites:
- src/init.cts  — cmdInitExecutePhase branch_name output
- src/commands.cts — cmdCommit pre-execution branch derivation

When project_code is set (e.g. "CK"), extractPhaseToken returns the
full prefixed token "CK-01" as phase_number.  Without normalization the
generated branch was "gsd/phase-CK-01-foundation"; after this fix it is
"gsd/phase-01-foundation", matching the documented {phase} contract
(padded numeric only).

Adds a regression test in tests/init.test.cjs.

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-06-08 22:51:38 -04:00
Tom Boucher
7e1112c28f refactor(#56): retire legacy runtime directory helpers into runtime-homes projection (#802)
* refactor(#56): retire legacy runtime directory helpers into runtime-homes projection

Consolidate per-runtime global config-dir resolution onto the single
canonical projection runtime-homes:getGlobalConfigDir. Extend it with the
explicitDir override (CLI --config-dir) and the opencode/kilo
OPENCODE_CONFIG/KILO_CONFIG file-path precedence the installer helpers had,
making it byte-for-behavior equivalent to the old getGlobalDir across all
15 install runtimes.

Delete bin/install.js's getGlobalDir/getOpencodeGlobalDir/getKiloGlobalDir
(and the orphaned local expandTilde), repoint all 9 call-sites, and remove
getGlobalDir from module.exports (net -242 lines in the installer). Migrate
the 5 test importers to the canonical projection; harden default/XDG
assertions against ambient *_CONFIG env vars. getAgentsDir now respects
OPENCODE_CONFIG/KILO_CONFIG consistently with the installer (intentional
convergence). Update CONTEXT.md Installer Module entry.

Completes the installer-refactor chain #58 -> #60 -> #56.

Closes #56

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#56): add changeset for runtime directory helper retirement

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-06-07 12:24:04 -04:00
Tom Boucher
7e76f1a736 feat(#703): add --granularity override flag to /gsd:plan-phase (#750)
* feat(#703): add --granularity override flag to /gsd:plan-phase

Add a `--granularity <coarse|standard|fine>` flag to /gsd:plan-phase that
overrides the configured planning granularity for a single invocation.

The override is a new highest-priority tier above the existing precedence
chain (granularities[phaseType] -> granularity -> planning.granularity ->
'standard') in resolveGranularityInternal; when the flag is absent, resolution
is byte-for-byte unchanged. cmdInitPlanPhase now resolves with phaseType
'planning' so granularities.planning participates, and emits the resolved
value in the init JSON, which the plan-phase workflow forwards to the planner
prompt. Invalid values are rejected at the CLI boundary via a shared
assertValidGranularityOverride helper.

Closes #703

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#703): set changeset pr to 750

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-06-06 23:56:53 -04:00
Tom Boucher
b238baddbf fix(#663): resolve open CodeQL/Dependabot security alerts (ReDoS, prototype pollution, workflow perms, qs DoS) (#665)
* fix(#663): resolve open CodeQL/Dependabot security alerts

- ReDoS: collapse ambiguous nested quantifiers in phase-heading regexes
  (verify/validate/commands) and the plan-filename lookahead (phase) to
  provably-equivalent non-backtracking forms
- prototype pollution: guard __proto__/constructor/prototype in setConfigValue
- remove dead no-op .replace(/-/g,'-') in phase.cts
- escape all regex metachars in bug-2839 test
- add contents:read permissions to security-scan + install-smoke workflows
- pin qs >= 6.15.2 via overrides (DoS GHSA)
- broaden prompt-injection allowlist to translated security-model docs

Closes #663

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* test(#663): regression tests for prototype-pollution guard and roadmap-phase ReDoS

Behavioral test that config-set rejects __proto__/constructor/prototype keys
without polluting Object.prototype, plus a ReDoS guard (timing-bound) and
behavior-preservation assertions for the collapsed phase-heading regexes.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* test(#663): make ReDoS regression assert structured result, not elapsed time

Replace elapsed-time assertions (which tripped local/no-elapsed-assertion
ESLint rule and were unsound for synchronous ReDoS) with structured-result
assertions on adversarial inputs: assert that malformed phase headings/
unchecked-item lines without a terminating colon/space yield an empty Set,
which is both the correct behavior and an exercise of the fixed linear regex
on the catastrophic-backtracking input shape.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#663): add Security changeset fragment for #665

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* test(#663): fold prototype-pollution regression into config.test.cjs

The standalone bug-663-config-prototype-pollution.test.cjs was a 9th
config-module test file, tripping lint-test-file-count (the allowlist is
ratcheted and must not grow). Consolidated into config.test.cjs instead.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-06-04 08:54:15 -04:00
Tom Boucher
56a815c722 fix(#628): read snake_case requirements_completed in summary-extract (#640)
* fix(#628): read snake_case requirements_completed in summary-extract

cmdSummaryExtract read only the kebab frontmatter key
`requirements-completed`, but the tool's own JSON output key and the
milestone-audit `--pick` both use the snake form `requirements_completed`.
A SUMMARY written in the snake form the tool itself emits was silently
read back as [] — a false negative in milestone requirement traceability
with no diagnostic.

Make the reader tolerant of both key forms (kebab takes precedence), so a
round-tripped field is no longer dropped. extractFrontmatter does no
hyphen<->underscore normalization, so distinct keys had to be read
explicitly.

Adds regression tests: snake-only fixture now returns the IDs, and a
both-forms-present fixture asserts kebab precedence.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#628): add changeset for summary-extract snake-key fix

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-06-03 08:06:31 -04:00
Tom Boucher
df04aae5e4 enhancement(#537): migrate all hand-written bin/lib/*.cjs to TypeScript source of truth (ADR-457) (#602)
* enhancement(#537): migrate code-review-flags to TS source of truth

Collapse the hand-written get-shit-done/bin/lib/code-review-flags.cjs to a
TypeScript source of truth (src/code-review-flags.cts), compiled by tsc to a
gitignored .cjs build artifact at the same path, per ADR-457 (build-at-publish).
Second module after the semver-compare pilot (#541).

Behaviour is preserved byte-for-behaviour (characterization test added in
tests/code-review-flags.test.cjs locks the parser quirks). Adds compile-time
type checking: CodeReviewFlags interface + CodeReviewWorkflow literal union.
The require() path is unchanged, so code-review.md and the bug-3727 test keep
working. The emitted .cjs is gitignored and eslint-ignored, mirroring the pilot.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* enhancement(#537): migrate 9 leaf bin/lib modules to TS source of truth

ADR-457 build-at-publish, batch 1 (pure leaf modules, 0 sibling-deps):
001-legacy-orphan-files, context-utilization, redaction, artifacts,
command-arg-projection, clock, ui-safety-gate, review-reviewer-selection,
clusters. Each moves to src/*.cts (strict TS, typed), compiled by tsc to a
gitignored .cjs at the same require() path; behaviour preserved byte-for-
behaviour. Adds src/node-globals.d.ts (minimal ambient shim; "types":[]).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#537): add @types/node, drop hand-rolled node-globals shim

ADR-457 migration infra: replace the temporary src/node-globals.d.ts ambient
shim with @types/node@22 + "types":["node"] in tsconfig.build.json. Unblocks
migrating the ~49 remaining bin/lib modules that use node:fs/path/os/
child_process. Build + full suite (3030 pass) + lint all green; no .cts type
changes were needed (real Node types matched the shim).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* enhancement(#537): migrate 9 more bin/lib modules to TS (batch 2)

ADR-457 build-at-publish. Clean leaves: installer-migration-report,
prompt-budget. Type-error-prone leaves (were tsconfig.lint-excluded; now
strict-typed and removed from that exclude list): secrets, phase-lifecycle,
workstream-name-policy, decisions, validate, schema-detect. Plus
runtime-name-policy. Strict type fixes narrow unknown->concrete domain types
(no any/ts-ignore); behaviour preserved. Full suite green, lint 0 errors.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* enhancement(#537): migrate runtime-slash to TS (cross-import proof)

ADR-457. First cross-module TS->TS import: src/runtime-slash.cts imports
./runtime-name-policy.cjs and tsc resolves the sibling .cts types under strict
(no declaration files; NodeNext .cjs->.cts mapping), emitting a correct
require("./runtime-name-policy.cjs"). Confirms the recipe for coupled modules,
which must be migrated in dependency order (leaves-up). Suite green, lint clean.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* enhancement(#537): migrate 10 more bin/lib modules to TS (batch 3)

ADR-457 build-at-publish, Wave-1 leaves: event, workstream-inventory-builder,
plan-scan, fallow-runner, project-root, installer-migration-authoring,
update-context, 000-first-time-baseline, runtime-homes, model-catalog. Strict
typing fixed real issues (narrowing unknown, qualified fs/path calls, removed
unnecessary casts); plan-scan/project-root/workstream-inventory-builder dropped
from tsconfig.lint exclude. Behaviour preserved; suite green, lint 0 errors.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* enhancement(#537): migrate 5 large Wave-1 leaves to TS (batch 4)

ADR-457 build-at-publish: configuration, state-document, shell-command-
projection (42 dependents), security, command-aliases. shell-command-
projection keeps a namespace child_process import for mock-intercept
testability. loadConfig/migrateOnDisk emit synchronously (every caller uses
them sync; the one awaited migrateOnDisk caller tolerates a non-Promise) —
full suite (3030 pass) confirms behaviour preserved. configuration/
state-document/command-aliases dropped from tsconfig.lint exclude. Also fixes
the malformed batch-3 changeset frontmatter (type/pr) that failed lint:docs.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* enhancement(#537): migrate 6 Wave-2 modules to TS (batch 5)

ADR-457 build-at-publish: config-schema, model-profiles,
002-codex-legacy-hooks-json, logger, active-workstream-store, adr-parser.
First batch importing already-migrated siblings (configuration, model-catalog,
shell-command-projection, redaction, security) via ./sibling.cjs specifiers.
Strict type narrowing (typeof guards over String(unknown)); behaviour
preserved; suite 3030 pass, lint 0 errors.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* enhancement(#537): migrate 5 large Wave-2 modules to TS (batch 6)

ADR-457 build-at-publish: graphify, install-profiles, intel,
installer-migrations, worktree-safety. installer-migrations preserves its
dynamic require() loader for numbered migration modules (scoped lint
suppressions). Strict typing (typeof guards over String(unknown)); behaviour
preserved; suite 3030 pass, lint 0 errors. Wave 2 complete.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* enhancement(#537): migrate Wave-3 modules to TS (batch 7)

ADR-457 build-at-publish: planning-workspace, runtime-artifact-layout,
command-routing-hub, drift. Uses `import x = require()` for export= siblings;
drift's lazy require of runtime-slash hoisted to a top-level import (verified
non-circular). Behaviour preserved; suite 3030 pass, lint 0 errors.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* enhancement(#537): migrate small Wave-4 modules to TS (batch 8)

ADR-457 build-at-publish: cjs-command-router-adapter, phase-command-router,
surface, roadmap-upgrade. Typed the hub router handler results as the HubResult
discriminated union; surface drops 4 genuinely-unused imports. Behaviour
preserved; suite 3030 pass, lint 0 errors.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* enhancement(#537): migrate core hub (2.5k LOC, 68 dependents) to TS (batch 9)

ADR-457 build-at-publish: get-shit-done/bin/lib/core.cjs -> src/core.cts,
preserving all 63 exports via export=. All sibling deps already migrated
(shell-command-projection, model-profiles, model-catalog, worktree-safety,
planning-workspace, project-root, configuration, config-schema). Strict types,
no any/ts-ignore; config-schema lazy require hoisted (non-circular). Behaviour
preserved (independently verified: core's shard 3030 pass / 0 fail).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* test(#537): make ESLint-coverage + test-sprawl checks migration-aware

#551 test hardcoded 12 now-migrated modules as "hand-written, must be linted";
that invariant is obsoleted by the ADR-457 migration. Rewrite it to a
filesystem-driven invariant that holds at every stage: a bin/lib/*.cjs must be
eslint-ignored IFF it has a src/*.cts source (tsc-generated), else linted
(covers package-identity, which has no TS source). Also eslint-ignore
config-types.cjs (has a src counterpart) and drop the redundant
tests/clock.test.cjs (clock already covered by clock-seam + bug-474 tests),
which tripped the lint-test-file-count ratchet.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* enhancement(#537): migrate 9 Wave-5 router/inventory modules to TS (batch 10)

ADR-457 build-at-publish: phases/verify/init/agent/task/validate/roadmap/state
command routers + workstream-inventory. Router handler results typed against
core's exported shapes; behaviour preserved (caught+fixed a --verify boolean
flag regression mid-migration). Full suite green across all shards (only the 4
local gpg-env changeset-notes failures remain; CI passes them).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* enhancement(#537): migrate 7 Wave-5 modules to TS (batch 11)

ADR-457 build-at-publish: gap-checker, docs, check-command-router, frontmatter,
learnings, gsd2-import, profile-pipeline. Behaviour preserved; full suite green
across all shards (only the 4 local gpg-env failures remain). Also broadens
atomic-write-coverage.test.cjs to accept the tsc-compiled namespace-import form
while still asserting platformWriteSync is called (safety guard intact).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* enhancement(#537): migrate config + profile-output to TS (batch 12)

ADR-457 build-at-publish: config (729 LOC), profile-output (1142 LOC). All
exports preserved; cmdMigrateConfig de-asynced (migrateOnDisk is sync, awaited
caller tolerates it). Behaviour preserved; suite green across all shards
(only the 4 local gpg-env failures). Wave 5 complete.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* enhancement(#537): migrate 5 Wave-6 modules to TS (batch 13)

ADR-457 build-at-publish: template, uat, workstream, roadmap, audit. Behaviour
preserved (dead toPosixPath import dropped from audit; inline requires hoisted).
Suite green across all shards (only the 4 local gpg-env failures).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* enhancement(#537): migrate commands + state hubs to TS (batch 14)

ADR-457 build-at-publish: commands (1305 LOC), state (2074 LOC, 17 dependents).
All exports preserved; inner requires kept non-hoisted where load-order matters
(install.js, per-call security); acquireStateLock cast inlined to preserve the
err.code source token a structural test inspects. Behaviour preserved; suite
green across all shards (only the 4 local gpg-env failures). Wave 6 complete.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* enhancement(#537): migrate milestone to TS (batch 15a, hand-authored)

ADR-457 build-at-publish: milestone -> src/milestone.cts. Authored directly
(subagent capacity was unavailable). Also relaxes core.output()'s 3rd param to
optional, matching its real always-optional call contract (unblocks remaining
2-arg output callers). Behaviour preserved; suite green across all shards
(only the 4 local gpg-env failures).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* enhancement(#537): migrate phase, verify, init to TS (batch 15, final modules)

ADR-457 build-at-publish, Wave 7 (the last hubs): phase (1608 LOC), verify
(1615), init (2113). Adds src/package-identity.d.cts so verify can import the
permanently value-baked package-identity.cjs under strict TS.

Fixes two regressions the migration introduced in verify: restore
cmdValidateHealth's `return result` (callers/tests read result.warnings — it is
NOT side-effect-only), and make the bug-3384 source-pattern test tolerant of the
tsc-compiled bracket-notation form of the git_list_failed->W020 branch (behaviour
intact). Full suite green across all shards (only the 4 local gpg-env failures);
lint 0 errors. All 86 migratable bin/lib modules are now TypeScript sources.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#537): finalize ADR-457 migration — retire tsconfig.lint.json

All hand-written bin/lib/*.cjs are now src/*.cts sources, so the checkJs
stopgap tsconfig.lint.json (unused; not wired into eslint, scripts, or CI) is
deleted per ADR-457's final step. Also gitignore the tsc-generated
config-types.cjs (was still committed) for consistency with every other
emitted artifact. package-identity.cjs stays value-baked (declared via
src/package-identity.d.cts). Suite green; #551 ESLint-coverage test green.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#537): add prepare script so unpacked/git installs build bin/lib artifacts

ADR-457 build-at-publish: bin/lib/*.cjs are now gitignored, built by tsc. The
prepack/prepublishOnly hooks cover `npm pack`/publish, but `npm install -g
<dir>` and git installs run the `prepare` lifecycle — which was missing — so the
unpacked install shipped without the compiled .cjs and failed at startup with
"Cannot find module './lib/core.cjs'" (caught by the smoke-unpacked CI job).
Add `prepare` mirroring prepublishOnly (build:lib + build:hooks). prepare does
NOT run for registry consumers (they get the pre-built tarball), only for
source/local/pack installs.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#537): make CI build/lockfile checks work with gitignored bin/lib artifacts

ADR-457 build-at-publish exposed two CI assumptions that bin/lib/*.cjs are
always present on disk:
- check:env's lockfile-sync ran `npm ci --dry-run`, which now triggers the
  `prepare` build (tsc) — but it runs before deps are installed, so tsc is
  absent and it misreported the lockfile as out of sync. Add --ignore-scripts
  (a lockfile check must not build).
- the lint-tests job installs with --ignore-scripts (no prepare build), but
  lint:skill-deps require()s the built install-profiles.cjs. Add an explicit
  `npm run build:lib` step after install.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#537): narrow prepare to build:lib only (unbreak packed-smoke pack step)

prepare running build:hooks emitted "✓ Copying ..." stdout during `npm pack`,
which the install-smoke "Pack root tarball" step captures into $GITHUB_OUTPUT —
breaking it with "Invalid format". build:lib (tsc) is silent on success and is
all the unpacked/source install needs (the smoke-unpacked assertions exercise
gsd-tools, i.e. bin/lib, and tolerate hook setup with `|| true`). Matches
prepack. build:hooks still runs on prepublishOnly for real publishes.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#537): wire Stryker mutation gate to build-at-publish layout

The gate scored 0.00 because it mutated changed bin/lib/*.cjs that (a) were
generated artifacts and (b) included modules with no coverage in the command's
test set. Rework: mutation.yml now derives changed COVERED modules from
src/*.cts and maps them to their built bin/lib/*.cjs; Stryker mutates those
built artifacts with a no-rebuild command (mutating src/*.cts + per-mutant tsc
was ~3x over the 30-min CI budget).

NOTE: with the gate now correctly measuring the covered modules, their actual
mutation score is 42.94% (< break 50) — a pre-existing test-coverage gap
(adr-parser/prompt-budget/etc.), not introduced by this behaviour-preserving
migration. Reaching 50 needs more tests, a threshold/scope change, or a waiver —
a maintainer decision.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* test(#537): raise mutation coverage of covered modules above the 50 gate

Adds focused example-based unit tests that kill surviving mutants in the two
lowest-scoring covered modules:
- tests/prompt-budget.unit.test.cjs (112 tests): 17.9% -> 97.9%
- tests/adr-parser.unit.test.cjs (205 tests): 44.7% -> 89.4%
Both wired into stryker.config.mjs's command. Fresh full run over the 6 covered
modules now scores 82.25% (>= break 50); every covered module is >= 68%.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* enhancement(#537,#609): parallelize mutation gate via dynamic per-module matrix

The serial Stryker run timed out at 30 min once the migration's added tests
made every mutant re-run ~300 tests. Replace it with a dynamic matrix so the
gate completes well under budget — folded into this PR (was tracked as #609)
because it's a prerequisite for this PR's mutation gate to pass.

- scripts/mutation-matrix.cjs: single source of truth (covered-module -> test
  files) computing changed covered modules from git diff -> {has_work, matrix}.
- mutation.yml: detect -> dynamic `matrix: fromJSON(...)` mutate job (one
  parallel shard per changed module, scoped via MUTATION_TEST_CMD to only that
  module's tests, 15-min/shard) -> summary job that KEEPS the legacy check name
  "Stryker mutation score (changed files only)" so branch protection is
  unchanged. Per-shard jobs report as "Stryker (<module>)".
- stryker.config.mjs: commandRunner.command reads MUTATION_TEST_CMD (falls back
  to the full command locally).

Closes #609.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* test(#537,#609): give each mutation shard ≥50% on its own tests; drop blacksmith note

Per-module sharding revealed that active-workstream-store (46.5%) and
frontmatter (7.4%) only cleared 50% in the old serial run via timeout-noise from
the bloated 300-test command; on their own tests they were below the gate. Add
focused unit tests:
- tests/active-workstream-store.unit.test.cjs (115 tests): 46.5% -> 81.9%
- tests/frontmatter.unit.test.cjs (165 tests): 7.4% -> 63.4%
Both wired into scripts/mutation-matrix.cjs (per-module test map) and
stryker.config.mjs DEFAULT_TEST_CMD. All 6 covered modules now clear break:50
with only their own tests (config-schema/context-utilization/prompt-budget/
adr-parser already did). Also removes the leftover blacksmith TODO comment —
GitHub-hosted runners only; speed comes from parallel per-module shards.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* test(#537,#609): strengthen prompt-budget tests to clear the gate on its own tests

prompt-budget scored 39.58% when mutation-tested with ONLY its own tests (the
way the per-module CI shard runs it) — an earlier ~98% reading was inflated by
accidentally running the full multi-module command. Add 96 targeted tests to
tests/prompt-budget.unit.test.cjs (exact note-template text, plan-truncation
arithmetic/percentages, drop-block strings, noteInjected/hardFailed booleans):
scoped score 39.58% -> 68.75% (>= break 50). All 6 covered modules now clear
the gate on their own tests.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-06-02 11:45:01 -04:00