30 Commits

Author	SHA1	Message	Date
Tom Boucher	9a76ca6783	fix(#1882): distinguish unterminated frontmatter from absent frontmatter (#2712) ... * fix(#1882): distinguish unterminated frontmatter from absent frontmatter extractFrontmatter returned {} both for a document with no frontmatter and for one whose fence was opened and never closed, so a file truncated mid-write was byte-identical to a legitimate no-metadata file. Verified live through `gsd-tools frontmatter get`: both printed {} with exit 0 and nothing on stderr. Per ADR-1411's "corrupt is not absent" amendment the {} return is preserved exactly -- no caller may break -- and the cause is surfaced out-of-band as a deduplicated, unconditional stderr diagnostic. That mechanism lands as a shared leaf module rather than a per-site copy because three sibling findings in the same epic need it identically; four hand-rolled copies of one behaviour is the generative-fix-divergence defect class. The discriminator is deliberately not "opened but never closed". A Markdown document whose first line is a thematic break takes that exact branch, so flagging on the missing fence alone reports corruption on good Markdown -- the failure mode this class of check has shipped with before. The unterminated region is instead run through extractFrontmatter's own parser (extracted as parseYamlRegion so the probe and the real parse can never diverge) and reported only when it yields at least one key. Also folds an inline defect found while working: src/config-loader.cts carried two NUL bytes in the JSDoc added by this epic's Phase 1 (3eb1cede2), making it the only non-text file under src. file(1) reported it as data and text tools silently skipped it, defeating the audit rule that says to search the authored source; tsc passed because the bytes sat inside a comment, so no gate caught it. It is live on next. Refs #1879 Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> * test(#1882): pin unterminated-frontmatter detection and its negative space Covers the discriminator on both sides. The positive rows are the issue's own repro (LF and CRLF) plus the key-count boundary 0/1/2 around the ">= 1 parsed key" threshold. The negative rows are the documents that reach the same branch and must stay silent -- above all a Markdown thematic break at byte 0, which is how this class of check has previously shipped a false positive on valid Markdown. Deduplication is tested on both halves of the composite key: a repeat of the same (path, cause) is suppressed, a genuine second failure in a different file is not, and a Windows and POSIX spelling of one path resolve to a single key. The reset seam is asserted to actually clear -- #2674 is the precedent where a reset that silently failed to clear made every later dedup assertion a vacuous pass, and the cases only passed because each happened to pick an unused key, so every case here uses a path unique to itself. Assertions are on typed surfaces throughout -- the frozen reason enum and the dedup-set size -- never on diagnostic prose. The one CLI-level case asserts a differential between two runs (whether stderr is empty) rather than matching a message, and is the wired user-reachable surface for this fix. Stream failure is injected by overriding process.stderr.write and restoring it, never chmod 0o000, which root bypasses. Two properties guard the ~50 call sites of the changed function: the new optional path argument is inert with respect to the parsed value, and LF/CRLF spellings of a document still parse identically. Refs #1879 Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> * fix(#1882): raise the truncation threshold and repair the dedup key Isolated adversarial review found the one-key discriminator false-positives on ordinary Markdown: a thematic break above a single labelled line -- `Note:`, `Author:`, `TODO:`, `See:` -- parses as exactly one key and was reported as corruption, which is the precise failure the design claimed to prevent and the changeset promised was fixed. The threshold is now two keys. A file truncated after exactly one key becomes a false negative; that is the same precision-over-recall direction already taken at zero keys, and every GSD artefact this guards carries two or more frontmatter keys. Three dedup-key defects, each of which could silently swallow a real diagnostic: - Backslash normalization is removed. A backslash is a legal filename character on Linux and macOS, so folding it to a forward slash made two genuinely different files share one key. Two spellings of one Windows path may now report twice; two distinct files can never silence each other. Lost signal is the worse failure. - The key namespaces are tagged so a file literally named like the unnamed digest fallback can no longer collide with a path-less caller whose content hashes to that digest -- computable for any predictable content, no brute force needed. - The source identity is computed once rather than hashed twice per emission. Corrects the previous commit. The two NUL bytes in src/config-loader.cts were NOT in a JSDoc comment as that message claimed; they were deliberate separators in the live dedup key, and stripping them degraded it to bare concatenation. They are restored as escape sequences -- byte-identical runtime string, and the file is text again so grep can see it. The diagnostic script that misled me indexed a character-offset string with a byte offset. Also threads sourcePath through the STATE.md and PLAN.md readers so the two artefacts epic #1879 is actually about name their file rather than reporting under a content digest. Refs #1879 Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> * test(#1882): correct fixtures and assertions left behind by the review fixes The previous commit changed two behaviours deliberately and the suite still encoded the old ones, so gsd-test came back red with six failures across both lanes -- all of them mine. Fixtures carrying a single frontmatter key no longer clear the two-key truncation threshold, so the CLI differential and the two path-less dedup cases were asserting a diagnostic that is now correctly withheld. They now carry two keys, which is what a real interrupted write of a GSD artefact looks like. The Windows/POSIX case asserted that two spellings of one path collapse to a single key -- the exact folding that was removed because it also collapsed genuinely distinct POSIX files whose names contain a backslash. Inverted to assert they now report separately, with the reasoning recorded inline so the trade is not silently reversed later: mild duplicate noise on one Windows path is acceptable, a swallowed diagnostic is not. Refs #1879 Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> * fix(#1882): name the file at every read site, and report each file once The diagnostic reached only the four frontmatter CLI verbs, so ~47 of 53 call sites reported a truncated file under an anonymous content digest instead of naming it. Since naming the file is the whole point -- it is what an operator can act on -- that was a gap in the deliverable, not a scoping choice. 43 of 53 sites now pass the resolved path. Closing it surfaced a defect the original design missed. A single truncated STATE.md is parsed twice in a normal run: once by the read wrapper, which holds the path, and again by a pure core downstream, which is handed only the string and cannot know it. Those two parses keyed separately, so one file produced two diagnostics -- and wiring more sites made the collision more likely, not less. Every emission now registers both identities the input could be known by and checks both before writing, so whichever caller arrives first speaks and the other is suppressed. Distinct files with distinct content still report separately, which is the property ADR-1411 actually requires; two files whose truncated content is byte-identical collapse to one report, which stays the documented limit. Ten call sites deliberately keep no path. Two are frontmatter's own round-trip checks during set and merge, where passing a path would report on every write. The other eight are the state-transition pure cores, which ADR-1769 defines as (content, intent, deps) -> newContent with injected I/O; threading a path through them would contradict that recorded decision, so it is surfaced rather than taken unilaterally. With the widened key they no longer double-report, and in the normal flow the named parse runs first, so the file is still named. Refs #1879 Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> * fix(#1882): inject the STATE.md path into the transition cores The six state-transition cores parsed STATE.md frontmatter without knowing which file it came from, so a truncated STATE.md reached the operator as an anonymous content digest on exactly the artefact epic #1879 is named for. ADR-1769 section 3 shapes these as (content, intent, deps) -> newContent with injected deps, and deps is the seam for precisely this: something the core cannot derive without doing I/O. It already carries roadmapProvider and a phase-inventory provider on that basis, each documented as injected rather than imported so the core stays pure and testable without disk access. A resolved path is data, not I/O, so an optional sourcePath member extends the established pattern rather than contradicting it, and every existing stub keeps compiling because the member is optional. updateCore and reconcileCurrentPosition take no deps and are left alone. With the widened dedup key they cannot double-report, and in the normal flow the read wrapper has already named the file by the time they run. Also regenerates gsd-core/bin/lib/state-transition.cjs. That artifact is tracked rather than gitignored, unlike most of its siblings, so leaving it stale would have shipped a runtime without this change to anyone reading the repo without building. tsc had skipped the re-emit because its incremental build info still recorded an emit that had since been reverted, so the stale output survived a clean build; clearing tsconfig.build.tsbuildinfo forced it. The compiled-artifact-sync gate is what surfaced the drift and now reports all nine tracked artifacts matching their source. Refs #1879 Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> * fix(#1882): stop the widened dedup key from hiding a second file The previous commit widened the dedup guard so one file parsed twice -- once by a read wrapper holding the path, once by a pure core holding only the string -- reported once instead of twice. It did that by checking BOTH keys before emitting, which silently traded one defect for a worse one: two DIFFERENT files whose truncated content happened to be byte-identical now collided on the shared content digest, and the second file's diagnostic was swallowed. That is the over-coarse keying ADR-1411 explicitly forbids, reintroduced while fixing something else. The guard now checks only the key matching what the caller actually knows -- a named read checks its path key, a path-less read checks its digest key -- while still recording every key the input could later be identified by. The redundant path-less re-parse of an already-named file stays silent, and two distinct files always both report. Verified across all six orderings: same file named-then-anonymous reports once; two different files with identical content report twice; two different files with different content report twice; the same path twice reports once; two path-less parses of identical content report once; two path-less parses of different content report twice. The suite caught this -- twenty failures, all in the unusable-input tests that reuse one truncated fixture across different paths. The local probe written alongside the broken change did not, because it compared two files with different content and could therefore only confirm the expected behaviour. Refs #1879 Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> * test(#1882): count diagnostics emitted, not identities interned The suite measured the size of the dedup set as a stand-in for "how many diagnostics were emitted". That held only while one emission recorded exactly one key. Once an emission began recording every identity the input could later be matched by -- a path key and a content key for the same file -- the set grew by two per write and twenty assertions read 2 where they expected 1. The production behaviour was correct throughout; the proxy was not. Set size counts identities, which is an implementation detail of the guard. The behavioural claim these tests exist to make is how many diagnostics an operator actually saw, so the module now exposes that directly as an emission counter and the suite asserts on it. The set-size accessor stays for assertions genuinely about key shape. The local probe written alongside the change did not catch this because it counted process.stderr.write calls -- the right thing -- while the suite counted set growth. Verification now asserts both and requires them to agree, so a future divergence between the counter and real writes fails immediately rather than being discovered a bench run later. Refs #1879 Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> * test(#1882): retire two assertions that outlived the behaviour they described Both tests encoded assumptions the dedup fix invalidated, and both were caught by the suite rather than by the probe written alongside the change. The forged-path case asserted that a file named like the anonymous digest fallback must not suppress a later path-less report. That premise is gone: an emission now records every identity its input could be matched by, so ANY named report of some content silences the anonymous re-parse of that same content -- which is the same-file guard working as intended, and has nothing to do with the crafted name. The property still worth defending is that a crafted filename can never silence a real file reported under its own path, so that is what the test now asserts, with the deliberate suppression documented beside it. The reset-seam case ended by reading the size of the dedup set and expecting 1. Set size counts interned identities, not diagnostics written, and one emission now interns two. It asserts the emission counter for the event and keeps a weaker set-size check for the interning. Refs #1879 Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> * fix(#1882): close the review findings on the discriminator, dry-run and counter Three orthogonal review passes ran against the final diff. Their findings: A labelled preamble under a leading rule was still misreported. Raising the key threshold to two only moved the boundary, because two colon-labelled lines are as common in ordinary prose as one -- a document opening with a rule over an Author and a Reviewed-by line, then prose, was called corrupt. Key count alone cannot separate the two. What does is what follows: a write interrupted part way through a frontmatter block ends mid-block, so every line of the region is still frontmatter-shaped, whereas a document merely opening with a rule goes on to prose. Both conditions are now required, and each closes a false-positive class the other leaves open. Nested list values and indented continuations stay frontmatter-shaped, so legitimate truncations are unaffected. `state rebuild --dry-run` reported a truncated STATE.md anonymously. The write path is named only because readModifyWriteStateMd parses with the path first; the dry-run branch reads the file directly and never did. Dry-run is the read-only mode an operator reaches for first when they suspect corruption, so it is the one that most needed to name the file. reconcileCurrentPosition takes the path as an optional argument now and rebuildCore passes it down. That function was previously left alone on the grounds that a read wrapper always names the file first -- this is the flow that disproves it. The emission counter counted write attempts rather than writes, so on a broken stderr it claimed a diagnostic had reached the operator when nothing had. It is incremented only after a write that completed, and the broken-stderr test now asserts the count as well as the return value. Two documentation defects. The module described a guarantee it does not keep: one file yields one diagnostic only when the named read comes first. The reverse ordering emits twice, and that is deliberate -- a path-less caller cannot identify its file, so suppressing the later named report would also suppress a genuine second failure in a different file whenever two files share identical truncated bytes, which ADR-1411 ranks the worse failure. The comment now states the asymmetric guarantee and a test pins it. Separately, the CONTEXT.md glossary entry still described backslash normalization that a later commit removed, and asserted the opposite of what the tests pin; no lint checks prose against code, so nothing caught it. Also converts three body-level try/finally blocks to t.after(), per CONTRIBUTING.md's rule that try/finally belongs only in helpers with no test context -- the file's own emissionsDuring helper already did this correctly. Refs #1879 Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> * docs(#1882): tell the operator what the truncated-frontmatter warning means A user who has just seen the new warning is acting, not studying, so this lands in the How-To quadrant beside the other "if you see X" branches in debug-a-failed-execution, not in reference or explanation. It gives them what the warning means for this run, three steps to restore the file, and the fact that the warning changes no return value or exit code. It also states the case that matters more than the warning itself: silence does not prove the file is intact. GSD says nothing when the partial block carries fewer than two fields or reads as prose, because a Markdown document opening with a horizontal rule is indistinguishable from one of those. A reader chasing missing metadata needs to know not to treat quiet as clean. Why that threshold exists is explanation and deliberately stays out of a how-to. Refs #1879 Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> * chore(#1882): backfill changeset pr number to 2712 * test(#1882): constrain each branch of the frontmatter-shape check CI's mutation gate came in at 61.56 against a threshold of 62, and the surviving mutants were concentrated in isFrontmatterShaped -- the function added last, in response to review, and the only one never given tests of its own. It was exercised solely through extractFrontmatter, which covers the composite decision but leaves each branch of the predicate unconstrained: drop the blank-line filter, or any one of the three shape alternatives, and every existing assertion still passed. Four cases now pin the halves independently. A blank line inside an interrupted block must not disqualify it, which constrains the filter and its comparison. An unindented list item and an indented folded-scalar continuation each exercise one shape alternative that no other case reaches on its own -- the folded line is neither a key nor a list item, so it is the only input that distinguishes the indented branch. And two keys followed by prose must stay silent, which is the negative half: it fails if the predicate is ever mutated to accept everything, and it is the case that proves key count alone was never sufficient. Refs #1879 Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> * test(#1882): register the unusable-input suite with the frontmatter mutation shard The mutation gate reported an identical 61.56 across two runs whose only difference was four added tests. That is the tell: the tests were never executed. The frontmatter shard runs a fixed file list in stryker.config.mjs and scripts/mutation-matrix.cjs, and tests/unusable-input.test.cjs was in neither, so the entire suite covering the new unterminated-fence branch was invisible to the gate while passing perfectly well in the normal run. So the score was not measuring weak tests, it was measuring absent ones: #1882 added mutants to frontmatter.cjs and no test in the shard covered them. Both lists gain the file; the config already notes they must stay in sync. This is a registration ripple a new test file carries when it covers a mutation-tracked module, alongside the .gitignore, eslint, inventory, glossary and size-baseline ripples a new module carries. Nothing warned about it, which is why two runs were spent before the identical score gave it away. Refs #1879 Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 5 <noreply@anthropic.com>	2026-07-27 16:50:12 -04:00
Tom Boucher	28e486faf7	fix(#2608): fail closed when git add fails during commit staging (#2693) ... * fix(#2608): fail closed when `git add` fails during commit staging `cmdCommit` ignored `git add` failures. #2523 had already stopped a failed path entering the commit pathspec, but skipping it silently left two bad outcomes, both reproduced against the pre-fix build: - SOME paths fail -> `{"committed":true}`. `git commit` still ran and PARTIALLY committed the subset that happened to stage, under a message describing the full requested scope. - EVERY path fails -> `{"reason":"nothing_to_commit"}`, which is not what happened and points the operator nowhere. In both cases git's original `add` stderr was discarded, so the user saw a downstream `commit_failed` / pathspec error naming an innocent file — the symptom reported in the issue from a linked worktree whose git directory was outside the managed writable root. Staging failures are now collected and the command fails closed BEFORE `git commit` runs, returning the issue's specified shape: { committed: false, hash: null, reason: "staging_failed", file: "<first failing path>", error: "<original git add stderr>", failures: [ { file, error, timed_out }, ... ] } A timeout is distinguished as `staging_timeout` (issue AC5) using the projection's SIGTERM+ETIMEDOUT signal — the same idiom worktree-safety.cts uses. The check is placed ahead of the `nothing_to_commit` branch so an all-paths-failed run reports the staging cause rather than an empty changeset. Unchanged: successful staging still commits exactly the declared scope and leaves unrelated staged files alone; an explicitly-named file that does not exist is still skipped rather than staged as a deletion (#2014/#2523), and a request where every named file is missing still reports `nothing_to_commit` — no `git add` ran, so there is no staging failure to report. Regression tests inject the failure by monkeypatching `execGit` on the projection module (per CLAUDE.md, over `chmod 0o000`, which does not fault under root and would make the tests vacuous), driven in a `node -e` child because `output()` writes via `fs.writeSync(1, …)` and cannot be captured in-process. Pre-fix, 6 of the 10 assertions fail; post-fix all pass. Closes #2608 Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01QT3ibz5qJuDuGqpTGRYVGf * fix(#2608): roll back the index, guard the sibling surfaces, document the new reasons Six findings from the orthogonal review of the first commit, all fixed here. 1. A `staging_failed` return left the index PARTIALLY STAGED. The paths that did stage stayed in the index with no commit made and no cleanup, so the next bare `git commit` would sweep them up — the same silent partial commit this fix exists to prevent, deferred one step. (Pre-fix the partial state at least got consumed by the incorrect commit.) The staging failure path now resets the paths it staged, matching cmdPrSubrepo's established rollback-then-error convention. The reset is scoped to what THIS call staged — paths the caller had already staged are captured up front and excluded, so a caller's own work is never destroyed — and is best-effort, since an unwritable index (the very failure being reported) cannot be reset either. 2. `cmdCommitToSubrepo` still had the identical defect: a failed `git add` was dropped silently and the function committed the subset that happened to stage, discarding git's stderr. It now fails closed per sub-repo with the same staging_failed/staging_timeout reasons and the same scoped rollback. 3. The `git rm --cached --ignore-unmatch` branch (default mode, for a planning file that no longer exists on disk) still discarded its result. It mutates the index exactly like `git add`, and `--ignore-unmatch` already makes "no such path" a success, so a non-zero exit there is a real I/O failure — now routed through the same staging-failure path. 4. `agents/gsd-executor.md` documented the commit envelope as an exhaustive three-shape enum and pattern-matched only `nothing_to_commit | commit_failed`. It is the sole consumer doc for this surface, so the new reasons are added with explicit guidance not to retry (a retry hits the same unwritable index), and the "one of three shapes" framing is corrected. 5. The default (non---files) staging path and `--amend` are now covered by tests. Both were already guarded by the first commit but unexercised. 6. The changeset framed the fix as `--files`-only; it applies to default and sub-repo commits too, and now mentions the rollback. Regenerated the agent size baseline and the 18 golden install-parity fixtures for the gsd-executor.md edit. 16 assertions across both surfaces verified against the built lib. Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01QT3ibz5qJuDuGqpTGRYVGf * test(#2608): update the #2523 out-of-repo contract to the new staging_failed reason The remote test run surfaced this: `#2523: out-of-repo --files path is rejected by git` asserted `reason: 'nothing_to_commit'`, and now gets `staging_failed`. This is a deliberate contract improvement, not a papered-over failure. The old reason existed only because a failed `git add` was skipped and the resulting empty `stagedPaths` fell through to the empty-changeset branch. But "nothing to commit" is not what happened — the caller named a file and git refused it — and that misreport is exactly the class of defect #2608 closes. The result now carries the offending path and git's own message ("… is outside repository at …"), which is strictly more actionable for the same condition. #2523's two substantive invariants are untouched and still asserted: no commit is created, and the index is left clean. Two assertions are ADDED (the path is named, git's message is preserved) so the richer contract is pinned rather than merely allowed. Per CONTRIBUTING, a stale-test correction rides its own commit. Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01QT3ibz5qJuDuGqpTGRYVGf * fix(#2608): compact the executor doc addition to stay under the agent LARGE cap The remote test run failed: `gsd-executor.md is 49217 bytes — exceeds the LARGE hard cap of 49152`. The file was already at 48596 (556 bytes of headroom) and the new commit-envelope documentation pushed it 65 bytes over. The cap is a red line, not a budget to raise, so the addition is compacted rather than the cap moved: four lines instead of eight, keeping the load-bearing facts — the two new reasons, that nothing was committed and the index was rolled back, that `file` + `error` should be surfaced, and that retrying is wrong because a retry hits the same cause. Dropped only the restatement of the linked-worktree example (already in the changeset and PR) and the `failures[]` field (a superset of `file`/`error`, discoverable from the payload). Net addition is now 276 bytes; the file sits at 48872 with 280 bytes of headroom. Extracting the agent's shared boilerplate to references/ would buy much more, but that is a restructuring of the executor agent and does not belong in a commit-staging bugfix. Agent size baseline and the golden install-parity fixtures regenerated. Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01QT3ibz5qJuDuGqpTGRYVGf * chore(#2608): backfill changeset PR number (#2693) --------- Co-authored-by: Claude Opus 5 (1M context) <noreply@anthropic.com>	2026-07-27 02:45:35 -04:00
Tom Boucher	115433bba6	fix(#2539): anchor commit phase-token detection; drop silent wrong-branch switch (#2669) ... * fix(#2539): anchor commit phase-token extraction to the phases/ segment; drop silent switch-to-existing cmdCommit auto-detected the commit's phase from --files with an unanchored `match(/(\d+(?:\.\d+)*)-/)`, which returns the leftmost digit-run-then-hyphen anywhere in the joined path. A project_code ending in a digit (PROJECT_V2) made `.planning/phases/PROJECT_V2-07-name/…` match the `2-` inside `V2-` before the real `07-` token, resolving phase 2. findPhaseInternal also searches archived milestones, so an existing archived phase 2 produced a real branch name and the silent `git checkout <existing-branch>` fallback switched the whole working tree onto the wrong branch in the same call that then committed. The extraction now anchors to the directory segment immediately under `.planning/phases/` (or `.planning/milestones/<v>-phases/`) and runs it through the existing project-code-aware extractPhaseToken helper — the single owner shared by the other 6 call sites — rather than introducing a fourth independent copy of phase-token-matching logic. The auto-switch keeps create-if-absent only (the #1278 intent: ensure the branch exists before the first commit on it); it no longer force-switches an already-checked-out working branch onto a different existing branch. Adds two regression fixtures: a digit-suffixed project_code + an archived phase whose number collides with the trailing digit (the silent-wrong-branch case), and a pre-existing phase branch that must not be silently switched onto. * test(#2539): assert non-silent warning; hoist execFileSync; normalizePhaseName guard Address orthogonal-review findings on the #2539 fix: - Spec AC2 ('an auto-checkout mid-commit must never happen silently'): the no-switch path now writes a 'Warning: resolved phase branch X already exists; committing on Y instead' line to stderr when checkout -b fails because the branch already exists. The regression test captures stderr via spawnSync and asserts the warning, so neither direction of the branching resolution is silent. - Spec AC3 ('reuse normalizePhaseName/extractPhaseToken/stripProjectCodePrefix'): the token-acceptance guard now runs the candidate token through normalizePhaseName and accepts it only when it normalizes to a numeric phase form, rather than the brittle 'token !== phaseDir && /\d/.test(token)' check that leaned on extractPhaseToken's undocumented dirName fallback. - Standards (Duplicated Code): hoist execFileSync/spawnSync requires to the top of the 'commit command' describe block instead of inlining them per test. * fix(#2539): build phase-token shape from PHASE_NUMBER_TOKEN_SOURCE (#2128 guard) The acceptance guard regex in detectPhaseNumberFromFiles was a hardcoded `/^\d+[A-Z]?(?:\.\d+)*$/i` — a literal re-derivation of the canonical phase-number grammar, which the #2128 phase-id drift guard (tests/phase-id-drift-guard.test.cjs) rejects unless sanctioned with a `// phase-id-owner:` marker. Build it from the single-owner PHASE_NUMBER_TOKEN_SOURCE export instead, so this read-side acceptance check cannot drift from every other phase-token reader. gsd-test reported this as 2 failures (linux-node22 + linux-node24) on the prior commit. * docs(#2539): backfill changeset pr: 2669	2026-07-26 14:14:28 -04:00
Tom Boucher	6ee4349272	fix(#2537): extract offer_next step to references/ (~3.3KB headroom restored) (#2642) ... * fix(#2537): extract offer_next step to references/ (~3.3KB headroom restored) * chore(#2537): backfill changeset pr to 2642	2026-07-25 05:30:20 -04:00
Tom Boucher	e4dd0cbdd5	fix(#2523): normalize --files to repo-relative; reject out-of-repo; gate push on git-add exit (#2638) ... * test(#2523): absolute + mixed + out-of-repo --files paths * fix(#2523): normalize --files to repo-relative; reject out-of-repo; gate push on git-add exit * chore(#2523): backfill changeset pr to 2638	2026-07-25 01:50:36 -04:00
Tom Boucher	09b535ac00	feat(#2481): add a negotiated effortSurface axis and wire invocation-time effort ... ADR-1239 gains a ninth negotiated axis, effortSurface (argv | none), declaring how a host accepts reasoning effort. ADR-443 is amended in the same change because its recorded deferral is what the axis resolves: its Unblock condition offered paths (a) and (b) and stated the choice was 'a maintainer call this file records but does not make'. Path (a) is selected and satisfied here. Before this, effort reached a runtime only through install-time channels (EFFORT_RENDERING's frontmatter/api), so reviewer CLIs spawned as subprocesses silently inherited whatever effort sat in the user's own global CLI config. The review lane now resolves one universal effort through the ADR-443 cascade and renders it per host through the negotiated descriptor. Every per-host value is documentation-sourced, never inferred: - claude argv -- verified via 'claude --help' (--effort <level>) - opencode argv -- verified via 'opencode run --help' (--variant) - codex argv -- codex-rs/exec/src/cli.rs: model_reasoning_effort is NOT a CLI flag (config.toml key only), so the global -c override is the only argv route - 15 hosts undocumented -- their docs state no reasoning setting; the sentinel fails closed rather than inheriting a profile baseline No config-file vocabulary member: the only host that ever had one (Gemini CLI's thinkingConfig) was removed as a sunset runtime by 8f2ebbe9b (#1928, PR #1996), and neither Antigravity CLI nor ZCode documents a reasoning setting. Closes #2481 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>	2026-07-21 19:10:22 -04:00
Tom Boucher	be5113abfe	fix(#2408): fold colliding phase statuses + add W023 collision warning (#2461) ... * fix(#2408): fold colliding phase statuses + add W023 collision warning Two coupled bugs from #2408: 1. cmdStats last-write-wins status (src/commands.cts:1610-1618): when two on-disk phase directories normalize to the same phase key (e.g. `05-real/` and `05-real-stray/`), the directory-scan merge overwrote `status` with whatever the *current* directory in scan order computed, discarding `existing?.status` entirely. fs.readdirSync order is not stable across platforms, so /gsd-stats could silently report `Not Started` for a phase that is actually `Complete`. Plan/summary counts were already additively merged; only `status` was wrong. Fix: introduced a `foldPhaseStatus(a, b)` helper that returns whichever status is further along the precedence ladder `Complete > Needs Review > Executed > In Progress > Planned > Not Started` (with `Pending` and unrecognized statuses ranked after). The merge site now calls `existing ? foldPhaseStatus(existing.status, status) : status`. The fold is commutative, so the result is identical regardless of read order. 2. cmdValidateHealth had no collision-detection pass (src/verify.cts): codes W001-W022 cover every condition except normalized-key collisions, so an operator got zero signal that anything was wrong. Fix: added W023 — groups phaseDirEntries by their normalized phase key (via the existing normalizePhaseName + extractPhaseToken helpers from phase-id.cjs — same normalization cmdStats uses) and emits a warning for any group with ≥2 dirs. The warning names the normalized key, both directory names (sorted by comparePhaseNum for stable output), and each directory's independently-computed status (via determinePhaseStatus imported from commands.cjs). Wording is deliberately neutral — never guesses which directory is the real one. The optional --repair path from the issue is intentionally NOT implemented in this PR (the issue marked it lower priority and acceptance criterion 4 is vacuously satisfied by omission). Triage correction applied: the issue proposed W022, but that code is already in use for config.json model-tier validation (src/verify.cts :1372-1391). The next free code is W023, used here. Tests: - tests/commands.test.cjs: integration test that 05-real/ (Complete) + 05-real-stray/ (empty/Not Started) collide and stats reports the merged phase as Complete regardless of read order; plus a direct unit test of foldPhaseStatus asserting commutativity + correct precedence for every status pair + correct handling of unrecognized statuses. - tests/health-validation.test.cjs: integration test that W023 fires on the collision naming both dirs + their statuses (and uses neutral wording), plus a negative test that no W023 fires when only one dir exists per key. References: #2408; reporter's three-layer triage + acceptance criteria; triage correction that W022 is already in use (model-tier validation). * chore(#2408): backfill pr:2461 in .changeset/graceful-koalas-forage.md	2026-07-20 15:49:57 -04:00
Tom Boucher	455ad49ae3	feat(#2296): config-gated provider escalation on quota-exceeded (#2458) ... * test(#2296): failing-first coverage for provider escalation on quota-exceeded Covers the provider-escalation ladder layered onto EXEC.CLASSIFY: back-compat (no escalation block without --failure-class), cap boundaries at min(max_escalations, list length) at limit-1/limit/limit+1, opt-in gating, malformed/hostile provider_escalation config, the --failure-class CLI negative matrix, config-key registration, and a fast-check budget-limit property. Red until the resolver, CLI flag, and manifest key land. Refs #2296 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * feat(#2296): config-gated provider escalation on quota-exceeded The dynamic_routing tier ladder escalates within one provider, which does not help when that provider is what ran out of quota. Add an opt-in provider ladder layered on the existing EXEC.CLASSIFY seam. - model-resolver: resolveProviderEscalation walks dynamic_routing.provider_escalation capped at min(max_escalations, list length), reporting from/to/attempted/exhausted. Invalid entries are dropped (ADR 227 shape validation). Stays a leaf module — the quota-class policy decision is the caller's, per the CONTEXT.md contract. - agent-command-router: export a frozen AGENT_FAILURE_CLASSES so the new CLI validator cannot drift from the classifier that produces the values. - resolve-execution: --failure-class flag; emits an escalation block ONLY when passed, so the existing JSON contract is byte-identical for every caller. - config-schema.manifest: register dynamic_routing.provider_escalation. - execute-phase step 7.1: auto-escalate, honor Retry-After, fail loudly naming every model tried once the ladder is spent. Refs #2296 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#2296): extract quota recovery to a reference fragment; regen goldens The step 7.1a addition pushed gsd-core/workflows/execute-phase.md from 93390 to 95111 LF bytes, past the frozen ADR-857 Phase 6 ceiling (hard <93600, margin <=93400) asserted by tests/fix-2285-claude-orchestration-wiring.test.cjs. The base sat 10 bytes under the margin, so no inline wording would have fit. That gate's own rationale is that optional-feature detail belongs in a fragment, not the host loop. Moved BOTH the new provider-escalation branch and the pre-existing manual recovery prompt into gsd-core/references/execute-phase-quota-recovery.md, leaving step 7.1 as a one-line pointer. execute-phase.md is now 92880 bytes — 510 SMALLER than base. Also regenerates the fixtures that legitimately moved because three shipped files changed (gsd-tools.cjs, config-schema.manifest.json, execute-phase.md): golden-install-parity + install-tree for all 16 runtimes, INVENTORY.md + INVENTORY-MANIFEST.json for the new reference, and the workflow size baseline. Refs #2296 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * test(#2351): make the C1 orphan-reaping test load-independent tests/run-with-timeout.test.cjs C1 asserted the child heartbeat file exists after a 1s group-kill window, but the child only wrote it on the first 100ms setInterval tick. Nothing synchronized the two: on a loaded container the group is SIGKILLed before that tick lands, the file never appears, and the assertion fails for a reason unrelated to reaping. Observed failing on both linux-node22 and linux-node24. The behavior actually under test is the FREEZE assertion (heartbeat stops advancing => descendant was reaped, not orphaned). That is unaffected by sampling once more at t=0. Child now writes its first heartbeat synchronously at startup before arming the interval, and the kill window widens 1s -> 3s to cover child boot under load. Both remove the timing dependency; neither weakens what the test proves. Refs #2296 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#2296): backfill pr:2458 in .changeset/rapid-jays-bark.md * chore(#2296): regenerate fixtures after rebase onto #2402 The rebase conflicted on the generated golden-install-parity fixtures and workflow-size-baseline.json because #2402 (b6e6a22fc) regenerated the same artifacts. Conflict resolution picked a side to unblock the rebase; a true regeneration on the combined tree then produced further drift, confirming the resolved content was stale and would have dropped #2402's fixture changes. Regenerated goldens, install-tree, size baseline, and INVENTORY-MANIFEST from the merged tree. docs/INVENTORY.md keeps BOTH new reference rows. execute-phase.md is 92782 LF bytes with both #2402's and this PR's extractions applied — under the frozen ceiling (hard <93600, margin <=93400). Refs #2296 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>	2026-07-20 14:59:30 -04:00
Tom Boucher	b0f672f88c	fix(#2337): capture and surface todo severity (#2381) ... add-todo.md gains a confirm-based infer_severity step (infer from the blocker/major/minor/cosmetic taxonomy, confirm via AskUserQuestion with TEXT_MODE fallback, before writing) and a severity frontmatter field. cmdListTodos and cmdInitTodos now surface severity, backward-compatible (key omitted when absent), in parity. Closes #2337. Admin-merged (self-review bypass) with full green CI.	2026-07-17 14:01:38 -04:00
Tom Boucher	a30fb75b51	fix(#2068): dynamic routing escalates the model per --attempt (#2334) ... * fix(#2068): dynamic routing escalates the model per --attempt, not just effort cmdResolveExecution resolved the model via resolveModelInternal (which ignores dynamic_routing), so retries escalated effort but the model stayed pinned to the default tier. Resolve the model via resolveModelForTier when --attempt is given, gated identically to the effort resolution so model and effort stay symmetric — an omitted --attempt keeps the classic profile model (unchanged for everyone, incl. dynamic_routing users who don't pass --attempt). Escalation is capped at max_escalations. Falls back to resolveModelInternal when dynamic_routing is off. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * docs(#2068): backfill PR number 2334 into changeset Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>	2026-07-16 15:25:19 -04:00
Tom Boucher	c1885df9e5	chore(#2143): prohibition-with-teeth + migrate remaining ad-hoc table sites — Phase 4 (final) (#2253) ... * chore(#2143): prohibition-with-teeth + migrate remaining table sites — Phase 4 Phase 4 of epic #2143 (ADR-2143 §7). Completes the markdown table/mutation consolidation by (a) giving the ad-hoc-parsing prohibition teeth and (b) migrating the last ad-hoc table sites onto the shared seam. - src/markdown-table.cts: new formatting-preserving `updateTableCell` primitive (self-contained, ragged-row-tolerant header/delimiter/cell-range scan; splices only the target cell's raw span, preserving all other bytes incl. padding/CRLF; no-op-preserves-padding when a transformer returns the current value). Exports splitTableRow/isDelimiterRow/findTableStartOffset for tolerant reuse. - eslint-rules/no-adhoc-markdown-parsing.cjs: TABLE-REGEX detector extended to `new RegExp(<literal|static-template>)`; new `.replace()`-mutation detector for roadmap/state/content receivers with a table/section-shaped pattern. - scripts/lint-table-schema-drift.cjs (wired into lint:ci): fails if a TABLE_SCHEMA header drifts from its authored table; tests import its logic (single source). - Migrated onto the seam (behaviour-preserving vs pre-Phase-4 HEAD, verified byte-diff old-vs-new): roadmap.cts cmdRoadmapUpdatePlanProgress, phase.cts cmdPhaseComplete + traceability, milestone.cts cmdRequirementsMarkComplete, uat.cts read path, state.cts metrics/decisions/By-Phase. - Incidental correctness gains from the migration: a decoy table can no longer swallow a phase-progress update (## Progress scoping); a ragged neighbouring row no longer silently aborts an edit; completing integer phase N no longer touches a decimal sub-phase N.x row; record-metric no longer drops trailing section content or duplicates the ## Performance Metrics section. - Kept justified allow-adhoc-markdown markers only where genuinely not a table (security.cts <|role|> token) or a loose non-GFM section (uat human-verify). Two orthogonal isolated reviews (correctness/adversarial + security) passed; correctness found 4 behaviour regressions in the first migration pass, all fixed and re-verified byte-identical-or-better vs OLD. Surfaced for maintainer (pre-existing, ambiguous domain logic, NOT changed here): templates/state.md places a By-Phase table under ## Performance Metrics while cmdStateRecordMetric assumes a Plan|Duration|Tasks|Files table. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#2143): match traceability row by first-cell value, not Requirement header Phase 4's migration matched the REQUIREMENTS.md traceability row by a column literally named `Requirement` (`row['Requirement']`), but real tables head that column `REQ-ID`. The by-name lookup found nothing, so `phase complete` and `requirements mark-complete` left the Status cell `Pending` (regressed #2769 / #2203, caught by gsd-test — 8 failures, both node 22/24). - src/phase.cts, src/milestone.cts: match the row by its FIRST cell's value (the requirement-ID column) regardless of that column's HEADER name, via `Object.values(row)[0]` (updateTableCell builds the record in header order). This mirrors OLD's first-cell `\|\s*<id>\s*\|` anchor, restoring header-name independence while keeping the seam. - src/milestone.cts hasTable: broadened from `Requirement`-only to also recognize `Requirement ID` / `REQ-ID` / `REQ ID` headers, kept in sync with the now-positional rowMatch/hasRow so a REQ-ID-headed table participates in the ADR-2143 §6 write-set and the #2140 table_unmatched drift check (it was silently omitted before — a checkbox-only partial reconcile against a REQ-ID table could report as fully reconciled). The `Requirement`-headed path is byte-identical to OLD. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * test(#2143): replace stale structural milestone guards with behavioural suite The `milestone.cjs regex global state fix` block was a source-structure guard (allow-test-rule: structural-regression-guard) — it readFileSync'd the compiled milestone.cjs and asserted removed regex idioms (`tablePattern.test`, `afterTable !== reqContent`, `doneTable = new RegExp(...)`). Phase 4's migration deleted those regexes (table update is now updateTableCell), making the assertions obsolete. Per the Test Cleanup rule, replace them in-PR with a behavioural suite driving the compiled CLI: - multi-ID mark-complete flips all IDs (guards the lastIndex/global-state class), - Pending->Complete flip under both `REQ-ID` and `Requirement` headers (#2769), - idempotent already_complete detection with no corruption, - REQ-ID-headed table participates in write_set (traceability entry, applied), - REQ-ID-headed table trips #2140 table_unmatched drift on a missing row. Pruned the now-nonexistent structural-regression-guard entry from the lint-allow-test-rule-refs allowlist (the source-text-is-the-product entry for the same file remains valid). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(changeset): backfill PR number 2253 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#2143): record-metric targets its own metrics table, not By-Phase velocity `state record-metric` appended its per-plan row (`| Phase 1 P1 | 5min | 3 tasks | 4 files |`) into the FIRST table under `## Performance Metrics` — which on a real template-derived STATE.md is the By-Phase velocity table `| Phase | Plans | Total | Avg/Plan |`, polluting it on EVERY plan completion (execute-plan.md:414 is a per-plan call). The command's own metrics table is `| Plan | Duration | Tasks | Files |`, which the template does not ship, so the row never reached it; the scaffold branch also emitted a wrong `| Phase | Plan | Duration | Notes |` header matching neither the row nor the canonical table. Pre-existing (predates Phase 4); surfaced while migrating this site and fixed here per no-defer, on the user's explicit go-ahead. - src/state.cts cmdStateRecordMetric: locate the metrics table by its own header shape (`Plan|Duration|Tasks|Files`, via splitTableRow/isDelimiterRow) rather than "first table in the section". When the section exists but has no metrics table (only the By-Phase table), self-heal by appending a fresh **Per-Plan Metrics:** table to the END of the section body — By-Phase table, Recent Trend and footer preserved verbatim, no duplicate `## Performance Metrics` heading, created stays false. Absent-section scaffold header corrected to the canonical `| Plan | Duration | Tasks | Files |`. Ragged-tolerance + None-yet preserved. - Not touching templates/state.md (golden-install-parity hashed) — record-metric self-creates the table on first use instead. Failing-first regression test (tests/state.test.cjs) demonstrates the By-Phase pollution on the pre-fix build, then green after. Verified: no pollution, self- heal idempotency, both-tables isolation, content/heading preservation, flags, None-yet, corrected scaffold header (23-check adversarial harness + all existing record-metric scenarios). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * feat(#2143): deleteSection seam primitive (level-bounded whole-section removal) ADR-2143 §4 shipped withSection/collectSection (replace a section BODY) but no way to DELETE a section (heading + body). Phase 4 suppressed the phase-remove section delete instead of building it. deleteSection(content, predicate, opts) locates the section via the collectSection machinery and splices out from the heading's start offset to the next same-or-higher-level heading — so a level-3 `### Phase N` delete stops at a following level-2 `## Progress`, never past it. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#2143): phase remove no longer deletes ## Progress on last-phase removal updateRoadmapAfterPhaseRemoval deleted a `### Phase N` detail section with a greedy raw regex whose lazy scan, on the LAST phase, ran to EOF and destroyed the following `## Progress` heading and its entire tracking table — silent data loss, uncovered by tests (removal tests only exercised a middle phase). Migrated onto the new deleteSection seam (level-bounded, stops at `## Progress`); dropped the allow-adhoc-markdown SECTION-DELETION suppression. Failing-first regression (tests/phase.test.cjs) removes the LAST phase and asserts the ## Progress heading + table survive; middle-phase removal is byte-identical. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * feat(#2143): deleteTableRow seam primitive (row removal, ragged-tolerant) Sibling of updateTableCell: locates the first GFM table, matches a DATA row by predicate (ragged-tolerant record build, header order), and splices out that row's whole line preserving every other byte. Returns {ok:false,reason} on no table / no match. Enables migrating the phase-remove Progress-table row delete off its ad-hoc regex (ADR-2143 §7 — the "future row-delete seam" Phase 4 punted). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#2143): phase remove deletes the Progress row via deleteTableRow The Progress-table row delete used a whole-document regex with two defects: (a) `\.?\s` required whitespace after the phase number, so a COMPACT row `|2|Beta|` was never deleted (stale row left behind); (b) unscoped — it could strike a row in a different table (e.g. an earlier `| Phase | Requirements |` table). Migrated onto deleteTableRow, scoped to the `## Progress` section (mirrors deriveProgressFromRoadmap), matching the row by first-cell phase number (integer zero-pad-insensitive; decimal exact; removing `2` never touches `2.5`). Both allow-adhoc-markdown suppressions removed. New behavioural tests: compact unpadded row deleted; padded byte-parity on the surviving rows (their ordinal correctly renumbers via the pre-existing renumber block). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#2143): deleteTableRow leaves no dangling newline on last EOL-less row Deleting the final row of a table with no trailing EOL sliced from the row's start to end-of-string, stranding the newline that terminated the previous line. Back rowStart over the preceding \r?\n in that branch so the table ends cleanly. (Caught by the primitive's own unit test on gsd-test; local scenario checks missed the no-trailing-EOL edge.) Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#2143): migrate read-only section-collects onto collectSection Six hand-rolled `## Section` read-extract regexes replaced by the collectSection seam (behaviour-preserving; extracted bodies feed the same downstream parsers): state.cts matchSessionSection (## Session / ## Session Continuity) + ## Blockers, smart-entry.cts ## Blockers, audit.cts ## Current Focus + ## Open Questions. Removes 6 allow-adhoc-markdown "pending #1372" suppressions. Incidental fix: the old Session regex `## Session[ \t]*\n` silently failed on a CRLF `## Session\r\n` heading (Windows STATE.md), nulling all session fields; collectSection is CRLF-safe, so session state now resolves on Windows. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#2143): fence-safe state-transition section writes + dedup stripFrontmatter - milestoneCompleteCore's `## Current Position` and `## Operator Next Steps` section resets used fence-blind raw regexes that a fenced `##` inside the body could truncate/mis-target (#2130/#2067/#2080 class). Migrated onto a fence-aware tokenizeHeadings-based helper (resetSectionVerbatim) that is byte-identical to the old output on the canonical path (9/9 fixtures) and correctly ignores a fenced fake heading (proven robustness gain). - mutateCurrentPositionFirstTime: hand-rolled locate+splice → collectSection + replaceSection (byte-parity). - stripFrontmatter was inlined byte-identically in state.cts AND state-transition.cts; hoisted the single canonical copy into frontmatter.cts (both call sites now import it) + unit tests — eliminates the divergence risk per CLAUDE.md "Generative Fix Divergence". Removes 3 allow-adhoc-markdown / #1372 markers. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#2143): name-address By-Phase sum + uat parse, eslint recall hole, catches - state.cts By-Phase "Total plans completed" sum: positional 2nd-cell regex → name-addressed splitTableRow read (correct on a reordered header, where the old code silently summed the wrong column). Marker removed. - uat.cts parseVerificationItems: loose pipe regex → splitTableRow within the existing table/numbered/bullet union scan (item list byte-identical; does NOT reintroduce the reverted strict-parseMarkdownTable item-drop). Marker removed. - eslint no-adhoc-markdown-parsing: close the `new RegExp(identifier)` recall hole — resolve a const-declared table-shaped regex identifier (mirrors the .replace() detector) + RuleTester cases; param/call args stay out (boundary). - commands.cts: delete a lying comment that claimed the scaffold date "stays on raw UTC / deferred" — #2136 already moved it to realClock.localToday(). - Empty catches (classified, not blind-swept): removed 4 dead try/catch; fixed 3 error-hiding (phase-insert decimal-dir I/O collision now fails loud; phase-remove rename partial-failure surfaced; milestone-archive true count via finally); left best-effort swallows with justification comments. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#2143): extractFencedBlock seam + migrate api-coverage named fence parseCoverageMatrix extracted its ```coverage fenced block with an ad-hoc regex (the last real allow-adhoc-markdown suppression). Added extractFencedBlock to the markdown-sectionizer seam (reuses stripFencedCode's CommonMark fence engine — info-string match, ~~~/backtick, nesting, indent) and migrated onto it; byte- parity on the parsed CoverageMatrix across 8 fixtures. Only security.cts:367 (a genuine `<|role|>` protocol-token false-positive, not a GFM table) remains marked in src/ — the "prohibition with teeth" goal (nothing grandfathered but a true FP) is met. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#2143): By-Phase row insert is name-addressed (insertTableRow seam) updatePerformanceMetricsSection's INSERT-new-row branch located the By-Phase table with a canonical-column-order-only regex + a hardcoded positional row literal, so on a reordered header it silently inserted nothing — inconsistent with the now name-addressed UPDATE and SUM halves of the same function. Added insertTableRow (markdown-table seam sibling of updateTableCell/deleteTableRow: name-addressed, header-order-agnostic, EOL-preserving) and migrated the branch onto it, mapping By-Phase values by column NAME. Canonical-order output is byte-identical; a reordered header now inserts a correctly-mapped row; a pre-existing CRLF mixed-EOL splice glitch is incidentally fixed. Retired the now-dead byPhaseTablePattern const. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#2143): phase-list checkbox flip via updateBullet seam Added updateBullet (markdown-sectionizer): a fence-aware, offset-tracked single-bullet write primitive (GFM 1–4-space marker tolerance) — the write counterpart to read-only iterateBullets. Migrated mutateMilestonePhase's phase-list checkbox flip (`- [ ] Phase N …` → `- [x] … (completed <date>)`) off its whole-slice regex onto it, same milestone-slice scope + clock seam. Byte-identical across simple / idempotent / metachar-title / double-space / CRLF scenarios. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#2143): scope the Progress-ordinal renumber to ## Progress via seam phase remove's integer-renumber decremented Progress-table phase ordinals with a whole-document `content.replace(/(\|\s*)(\d+)(\.\s)/g, …)` — unscoped, so it also rewrote any `| N. …` cell in an unrelated/decoy table (same class as the batch-2 row-delete scoping bug). Migrated onto updateTableCell, scoped to the ## Progress section, decrementing each affected row's leading phase ordinal by column name. Byte-identical on canonical Progress tables + multi-row + decimal-sibling cases; a decoy `| 3. … |` row before ## Progress is now correctly left untouched. The sibling heading / checkbox-bullet / PLAN.md-filename / Depends-on-prose renumbers are not GFM-table mutations (outside ADR-2143's table/section mandate) — left as-is. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#2143): review fixes — scope traceability write, restore Current Position H3-stop Adversarial review of the remediation (BLOCK verdict) — all 9 findings fixed: - F1 (BLOCKER): requirements mark-complete / phase complete flipped the checkbox but NOT the traceability row on the shipped template, because updateTableCell bound to the FIRST table (## Out of Scope, no Status column) instead of the ## Traceability table — the #2140 silent-divergence class, re-introduced by the seam migration and missed by tests (fixtures had Traceability first). Scoped the write + hasRow probe to the ## Traceability section slice (updateTraceability Cell helper) in milestone.cts + phase.cts. Failing-first tests on the Out-of-Scope-before-Traceability layout; the #2769 first-cell match preserved. - F2 (MAJOR): mutateCurrentPositionFirstTime restored to locateCurrentPosition (STOP_H2_PLUS) — collectSection's default H2-stop swallowed a level-3 subsection and the field regexes clobbered it (#2130 class). - F3/F8: Progress-ordinal renumber re-escapes via escapeCell + keys padding recovery by row index (was de-escaping `\|` and losing padding on dup values). - F4: insertTableRow escapes cell values internally. - F5: updateBullet accepts a tab after the marker (`[ \t]{1,4}`). - F7: resetSectionVerbatim consumes CRLF blank lines (byte-parity on CRLF). - F6/F9: corrected two misleading comments. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(changeset): data-loss + CRLF-session user-facing fixes (#2253) Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * test(#2143): de-flake the G10 windsurf ReDoS-guard wall-clock assertion The G10 test asserted `elapsedMs < 1000` for a 200k-char payload — a wall-clock assertion (CLAUDE.md: never assert on wall-clock time) that flaked on a loaded node24 bench at ~1.1s. It was redundant: runHook's spawnSync `timeout: 10000` already SIGKILLs a catastrophic-backtracking hook, so the exit-0 assertion is the real ReDoS guard. Removed the timing assertion; kept exit-0 + documented the subprocess-timeout mechanism. Surfaced (not caused) by this branch's gsd-test runs loading the bench; unrelated to the markdown-parsing changes but fixed in place per the no-flaky-tests rule. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>	2026-07-14 14:25:44 -04:00
Tom Boucher	4bb846b67a	fix(#2112): scope commit to --files pathspec, not entire index (#2148) ... * fix(2112): scope commit to --files pathspec, not entire index cmdCommit/cmdCommitToSubrepo/cmdPrSubrepo staged exactly the files named in --files but then ran a bare 'git commit' with no pathspec, absorbing anything else in the index into a commit whose message described only the named files (#2112). Fix: append '-- ...stagedPaths' to the commit args when the caller declared a scope. Three guards are load-bearing: - stagedPaths (not filesToStage) excludes skipped missing files (#2014) - explicitFiles gate keeps the default .planning/ path byte-identical - MERGE_HEAD check via 'git rev-parse' falls back to bare commit during merge - --amend is left without pathspec (different operation) cmdPrSubrepo pathspec uses changedFiles (old+new for renames) so the full rename is captured atomically. Also fixes workflow markdown in spec-phase.md and add-tests.md. All-files-missing now short-circuits to nothing_to_commit instead of absorbing the entire index under a message describing files that were not committed. * docs(changeset): backfill PR number (#2148) * test: update golden-install-parity fixtures for workflow markdown changes (#2112) * test: update golden fixtures + workflow baselines for #2112 changes - claude-local.json golden fixture (now generated via gen script) - workflow-size-baseline.json (add-tests.md +16, spec-phase.md +42 bytes) - Extended gen-golden-install-parity-zcode.cjs to also regenerate the claude local-layout fixture	2026-07-13 00:21:46 -04:00
Tom Boucher	58b20c31f8	fix(#2136): migrate ALL operator-facing date sites to localToday (anti-pattern elimination) ... The UTC-slice anti-pattern (deriving a calendar day a human reads by slicing a UTC instant) remained in several operator-facing sites beyond the original seamed last_activity set. Eliminate it everywhere a human reads the value as a calendar day — do not leave known bad code in place: - commands.cts cmdTodoComplete + cmdScaffold: completion/scaffold dates. - gsd2-import.cts: migrated STATE.md 'Last activity' / 'Last session'. - template.cts: plan frontmatter 'completed:' date. - verify.cts: health --repair session-log date + '(Backfilled: <date>)' header. - workstream.cts: workstream-create 'Last Activity' / 'created' + archive dirname. - init.cts: JSON-bundle 'date' (-> localToday) + 'timestamp' (-> nowIso) at all three sites; drop the now-dead 'const now = new Date()' in cmdInitTodos / cmdInitMapCodebase (cmdInitQuick keeps it for the local branch-id derivation). - state.cts: prune-archive '## Pruned <date>' header. - state-transition.cts: the 7 seamed last_activity writes (prior commit). No realClock.today() / .clock.today() / raw new Date().toISOString().split('T') operator-facing sites remain in src/. Rebuilds the tracked bin/lib/state-transition.cjs artifact to match.	2026-07-12 15:34:59 -04:00
Tom Boucher	71edb27fe1	fix(#2136): route operator-facing date fields through local clock day ... clock.today() derived the calendar day by slicing a UTC ISO instant (nowIso().split('T')[0]), so in any negative-UTC-offset zone during UTC's early hours last_activity named a day the operator had not reached yet — ahead of last_updated's local date, written by the same call. - Add Clock.localToday(): host-local YYYY-MM-DD via getMonth/getDate/ getFullYear, honoring the same GSD_NOW_MS pin as today()/nowIso(). - Route operator-facing date-only fields through localToday(): last_activity (state-transition ×7, state.cts), roadmap 'completed <date>' (phase.cts, roadmap.cts), milestone completion date (milestone.cts), todo/scaffold completion (commands.cts — now threaded through the realClock seam). - Leave today() (UTC) as the source for internal/cosmetic stamps. Closes #2136	2026-07-12 15:34:59 -04:00
Tom Boucher	2f6662d195	fix(#2128): bound the remaining lazy-scan ReDoS vectors (files_modified, Plans-count, <tag>) ... A ReDoS-completeness audit surfaced a distinct class beyond the tag/bracket clause: unbounded `[\s\S]*?` / `[^\]]*` lazy-scans searching for a literal terminator that may never appear, driven quadratic by REPEATED structures in a large PLAN.md/ROADMAP.md. Folded all 7 in at maintainer direction: - files_modified `[^\]]*` -> `[^\]]{0,8000}` (commands.cts, verify.cts): 39.7s -> 0.9s. - Plans-count `[\s\S]*?` -> section-local `(?:(?!\n#{1,4}\s)[\s\S])*?` — stops at the next heading (semantically correct: Plans: belongs to the phase's own section) (roadmap.cts x3, phase.cts): 36s -> 4ms. - <tag> extraction `([\s\S]*?)` -> stop at the next same-tag opening `((?:(?!<tag>)[\s\S])*?)` (verify.cts x3, markdown-sectionizer.cts): ~6s -> 2ms. Every vector is now linear (comprehensively re-measured); real content matches (end-to-end `roadmap get-phase` still resolves Plans-counted phases). Pre-existing; byte-behavior preserved for realistic inputs. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>	2026-07-10 10:11:43 -04:00
Tom Boucher	b321bc04f4	fix(#2128): bound the sibling bracket-prefix clause — complete the ReDoS fix ... Review caught that the prior commit bounded only the paren tag clause and left the SIBLING bracket-prefix `(?:\[[^\]]+\]\s*)?` (same host regexes, before Phase) UNBOUNDED — the identical quadratic reachable via a `[...]` run (measured ~16s at 1.7MB). Bound `[^\]]+`/`[^\]]*` -> {1,200}/{0,200} across all 19 phase/milestone heading prefixes. Comprehensive re-measurement now shows EVERY vector linear (bracket/paren/id/name/milestone all ~2-44ms at 2.45MB; bracket scaling 2k->2ms, 4k->5ms, 8k->10ms). Also: update the #1729 literal-mirror parity test off its stale unbounded constant, and add limit-1 (199) boundary coverage. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>	2026-07-10 09:44:49 -04:00
Tom Boucher	c1cd43a39f	fix(#2128): bound the phase-tag clause to {0,200} — kill quadratic ReDoS ... The canonical OPTIONAL_PHASE_TAG_SOURCE tag clause `(?:\s*\([^)\n]*\))?` (and its inlined literal mirrors across 11 modules) had an UNBOUNDED body, making the optional-group + /g header scan quadratic on adversarial ROADMAP.md/STATE.md — a long run of `(` after a header ran ~18.8s at 1.7MB. Bound the body to {0,200} in the constant AND every mirror in lockstep (the #1729 "both forms change together" contract), so the scan is linear: the same 1.7MB input now resolves in ~9ms (measured), while real tags (a handful of chars) still match and a 201-char tag is rejected. Added a #2128 boundary regression to the #1729 suite. Pre-existing (byte-identical before/after the Phase 4 migrations); folded in at maintainer direction rather than deferred. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>	2026-07-10 09:31:17 -04:00
Tom Boucher	015c3a7fda	fix(#2071): extract install-time effort resolvers so effort sync stops requiring the un-shipped bin/install.js ... `gsd-tools effort sync` crashed in every installed runtime (e.g. ~/.claude/gsd-core/) with `Cannot find module '../../../bin/install.js'`: cmdEffortSync (src/commands.cts) required the package-root bin/install.js for its install-time effort resolvers, but the installer only copies the gsd-core/ subtree into a runtime home — bin/install.js is never present there. So `effort` config changes silently never reached installed agents without a full reinstall (exactly the gap #488 was meant to close). 4th instance of the recurring "runtime code under gsd-core/ requires a file outside the shipped subtree via ../../../" anti-pattern (#1223/#1920/#1383 were the prior three, all already mitigated). Fix (ADR-457 direction — extract, single source): move readGsdEffectiveEffortConfig + resolveInstallTimeEffort (with their _getGsdEffortCatalog + _readGsdConfigFile helpers) out of the hand-authored bin/install.js into a new src/install-effort-resolver.cts that compiles into the shipped gsd-core/bin/lib/install-effort-resolver.cjs. commands.cts now requires it as a sibling (`./install-effort-resolver.cjs`) — always present in the installed tree — instead of `../../../bin/install.js`. bin/install.js imports the same four symbols back from the new module (it still calls them + re-exports them), so there is one source of truth and no duplication/drift. The lazy manifest read is repointed from the package-root layout (`.., gsd-core, bin, shared`) to the bin/lib layout (`.., shared`). Scope note: this is one of four instances of the anti-pattern; the other three are already shipped/guarded. A build-time guard rejecting new cross-boundary requires whose target isn't in the installer copy manifest (to prevent instance #5) is recommended on the issue but kept out of this fix. Tests: tests/effort-sync-installed-runtime.test.cjs does a real minimal install into a temp home (the golden-parity helper) and runs the issue's exact repro (`gsd-tools effort sync --config-dir <temp>`), asserting no MODULE_NOT_FOUND for bin/install.js. Fail-first verified: against pristine next the same test throws `Cannot find module '../../../bin/install.js'` at cmdEffortSync; post-fix it syncs cleanly. New module registered in .gitignore (ADR-457), eslint ignores, docs/INVENTORY.md + INVENTORY-MANIFEST.json. bin/install.js is not shipped and the new module is under bin/lib (excluded from golden parity), so no golden fixtures change. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>	2026-07-07 22:21:45 -04:00
Behruz Nassre Esfahani	12b35eeeaf	fix(#1729): resolve phase headers with a pre-colon parenthetical tag (#1765) ... * fix(#1729): resolve phase headers with a pre-colon parenthetical tag A phase header may carry a parenthetical tag between the number and the colon, e.g. `### Phase 26 (Cluster B): Title`. Every phase-header regex built `Phase\s+<num>` immediately against the colon delimiter, so the tagged phase was invisible: the resolver returned found:false and, just as bad, the capture-all enumeration/parse paths (roadmap analyze, milestone listing + milestone-scope filter, verify, init/import, state total_phases, validate, the command router, preamble stripping, and the phase-remove renumbering rewrite) silently dropped, miscounted, or failed to renumber it — wrong phase_count, progress_percent, next_phase, or corrupt numbering after a removal. The fix tolerates the tag at the header seam. Parameterized resolver sites compose the exported OPTIONAL_PHASE_TAG_SOURCE fragment; literal enumeration sites inline its character-for-character mirror `(?:\s*\([^)\n]*\))?`, placed immediately before the colon so it cannot alter an existing match (optional, single-line, one paren pair, no capture-group shift). In the renumber-on-removal rewrite the tag is folded into the re-emitted suffix capture so it survives verbatim. Both forms are documented to change together and a drift-guard test asserts their behavioral equivalence over a header corpus. Deliberately excluded: roadmap-upgrade.cts (legacy one-time migration), where tolerating the tag would silently drop it on header rewrite — that needs its own data-preserving treatment. Known boundaries left for follow-up: checklist/bullet-style phase entries (`- [ ] Phase N (tag):`) and a malformed space-before-colon variant, both pre-existing. Validated empirically against the issue's reproduction: `roadmap get-phase 26` resolves and `roadmap analyze` lists Phase 26 with the tag excluded from the name (phase_count 2, next 26); an all-tagged versioned roadmap now scopes correctly instead of falling back to a pass-all filter. Regression coverage in tests/phase.test.cjs asserts resolver parity (pre- vs post-colon), padding tolerance (#3537), decimal sub-phases, no cross-phase false match, the shared seam, enumeration coherence, renumber-preserves-tag, and seam/mirror drift. Full unit suite green (7291 pass, 0 fail); eslint + regression-name + resolution-provenance + changeset lints pass. Reviewed by Codex (no critical/high; the two enumeration misses it surfaced are folded in). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * chore(#1729): add changeset for pre-colon phase-tag fix Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>	2026-07-02 11:55:44 -04:00
Joe	e12a2abfd8	feat(#441): add /gsd-capture --list-seeds for seed listing and audit (#722) ... * feat(#441): add /gsd-capture --list-seeds for seed listing and audit Seeds (.planning/seeds/SEED-NNN-slug.md) could only be created (--seed), enriched (--enrich), or auto-surfaced at /gsd-new-milestone. There was no way to browse or audit parked seeds on demand. This adds a read-only listing, following the established --list → workflow pattern (per the approved scope on - gsd-tools `list-seeds [status]` (cmdListSeeds in src/commands.cts): scans the seeds dir, returns { count, seeds[], summary } JSON with each seed's id, slug, status, scope, trigger_when, planted, title. Optional case-insensitive status filter. User-controlled content is sanitized (sanitizeForDisplay) and every path validated (requireSafePath); read-only. Independent of audit.scanSeeds, which only returns unimplemented seeds for the milestone surface. - /gsd-capture --list-seeds routes to a new read-only list-seeds workflow that renders the seed table. Closes #441 * chore(#441): point changeset fragment at PR #722 * test(#441): allowlist list-seeds test in prompt-injection scan The test asserts that list-seeds neutralizes injection payloads (<system>, [INST]) embedded in seed content, so the fixtures legitimately contain those patterns — same as the sibling security tests already on the allowlist. * fix(#441): use canonical /gsd:capture colon form in list-seeds workflow Claude-facing source (commands/, agents/, gsd-core/workflows/, ...) must use the /gsd:<cmd> colon form per ADR/CONTEXT.md; the hyphen /gsd-<cmd> form is retired there (enforced by bug-2543-gsd-slash-namespace.test.cjs). The new list-seeds workflow used the hyphen form. * docs(#441): sync help full.md + INVENTORY for --list-seeds Adds the --list-seeds entry to the help reference (help/modes/full.md, per bug-2954 argument-hint↔help parity) and registers the new list-seeds workflow in docs/INVENTORY.md (88→89) and the generated INVENTORY-MANIFEST.json. * docs(#441): add --list-seeds how-to + drop phantom statuses Addresses CHANGES_REQUESTED on PR #722 (two documentation blockers): - USER-GUIDE.md Seeds section (how-to): extend the task to cover auditing parked seeds on demand via --list-seeds, including the status filter — kept task-oriented per Diataxis how-to mode. - CLI-TOOLS.md (reference): drop phantom statuses implemented|rejected from the list-seeds filter vocabulary; the system only produces dormant|active|triggered (src/audit.cts scanSeeds). Reference must be factually accurate and complete. * fix(#441): guard non-scalar status frontmatter in cmdListSeeds A seed with a bare `status:` line (extractFrontmatter yields {}) or a `status: [a, b]` value (yields an array) crashed the whole audit list: `(fm.status || 'dormant').toLowerCase()` throws a TypeError on a non-string. Coerce every frontmatter read through a `fmStr` helper (mirrors the existing `typeof fm.id === 'string'` guard), so a non-scalar status falls back to dormant and non-scalar scope/trigger_when/title can no longer leak a raw array/object into the JSON contract. Title is now capped symmetrically. Adds regression coverage for empty and array `status:` and non-scalar fields. Refs #441 * docs(#441): align list-seeds workflow status vocabulary The load_seeds step listed `implemented` as an example status filter, but the real seed vocabulary is dormant|active|triggered (src/audit.cts scanSeeds); `implemented` has no producer. Matches the earlier CLI-TOOLS.md correction. Refs #441 * refactor(#441): extract pure deriveSeedIdentity; match raw status in list-seeds Pull the seed_id/slug derivation out of cmdListSeeds into a pure, exported deriveSeedIdentity(stem, rawFmId) so the parsing contract can be property-tested in-process (review minor #1). No behavior change. Filter comparison now matches the raw lowercased status (both sides already normalized) instead of sanitizeForDisplay(status); sanitization is for output, not matching (review nit #3). * test(#441): add fast-check property coverage and count=1 boundary for list-seeds Adds tests/list-seeds.property.test.cjs with four fast-check properties over deriveSeedIdentity (never-throws, string-only contract, canonical id->seed_id/slug invariant, filename-prefix fallback) per RULESET.TESTS.property-based-testing (review minor #1). Adds an N==1 status-filter boundary case to list-seeds.test.cjs (review minor #2). * chore(#441): sync runtime launcher snippet into list-seeds workflow Propagate the current _runtime-launcher.snippet.sh (with non-Claude runtime home probes) into the new list-seeds.md workflow via scripts/sync-runtime-launcher.cjs, satisfying bug-891 (E) propagation. * test(#441): record list-seeds.md in workflow size baseline (#1074) --------- Co-authored-by: Tom Boucher <trekkie@nomorestars.com>	2026-06-22 00:59:41 -04:00
Enes Yağız	8748e95ed1	fix(#666): pr-branch silently ignored planning.sub_repos (#667) ... * fix(pr-branch): handle sub_repos from config with git -C (#666) Adds a `handle_sub_repos` step between `detect_state` and `analyze_commits`. When `planning.sub_repos` is set in config, the workflow now: - Reads sub-repo paths via `gsd_run query config-get sub_repos` - Skips the step entirely when the list is empty/null/[] - Scans each repo with `git -C "$REPO" status --porcelain` - Offers the user all/select/skip choices - For selected repos: creates a PR branch, commits all staged/unstaged changes, pushes, and opens a companion PR via `gh pr create` All git commands use `git -C "$REPO"` — never `cd "$REPO"` — because shell state does not persist between agent-executed commands. Closes #666 Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> * chore: update changeset pr number to 667 * fix(pr-branch): address maintainer review — correct seam, behavioral tests, robustness Resolves all three blockers and seven robustness issues raised in PR #667 review: Blockers: - Use `planning.sub_repos` (not top-level `sub_repos`) so config-get actually resolves - Replace prose grep test with behavioral fixture tests using runGsdTools + local bare repo - Extract sub-repo git work into new `cmdPrSubrepo` seam in src/commands.cts; never uses git add -A — stages explicit files only (universal-anti-patterns.md:44) Robustness: - Dirty-repo list persisted via mktemp/cat, not bash arrays (cross-block safe) - Branch name embeds repo slug (${CURRENT_BRANCH}-${REPO_SAFE}-pr) to avoid collision - push --set-upstream so gh pr create finds the branch - Sub-repo base branch resolved via ls-remote with fallback to repo's default branch - Remote slug parsed with /github\.com[:/]/ (handles SSH + HTTPS + .git-less URLs) - rollback() cleans up branch on any mid-sequence failure - node -e replaces jq (always available, no undeclared hard dep) Refs: #666 Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> * fix(pr-branch): security guard, push timeout, rollback fix, porcelain fix Security (Blocker 1): - Use security.cjs validatePath() in cmdPrSubrepo for symlink-safe workspace containment check — rejects ../escape, absolute paths, and symlink traversal - Add negative regression test: '../escape' repo path must be rejected Robustness: - Push uses timeout: 60_000 ms (network op needs more than the 10 s default) - Capture prevBranchName before checkout -b so rollback uses explicit name instead of git checkout - (fails on fresh single-branch repos) - Porcelain path parse: line.trimStart().slice(2).trim() handles all XY combinations and the execGit global-trim edge case uniformly Tests: 17/17 pass, lint: 0 errors Refs: #666 Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> * fix(pr-branch): move regression tests to commands.test.cjs, add core.quotePath=false - Move cmdPrSubrepo behavioral + workflow source-invariant tests from standalone bug-666-*.test.cjs into tests/commands.test.cjs under describe('pr-subrepo') per TESTING-SUITES.md policy (no new bug-* files). Adds allow-test-rule: source-text-is-the-product see #666 for the workflow-source-invariant suite. - Add -c core.quotePath=false to git status --porcelain call so non-ASCII filenames (e.g. café) are not C-escaped, keeping slice(2) parse correct. * fix(pr-branch): remove obsolete regression tests for sub-repos handling * fix(pr-branch): update workflow-size-baseline, add dirty-scan timeout - Regenerate tests/workflow-size-baseline.json for pr-branch.md growth (+handle_sub_repos step, +timeout addition). - Add { timeout: 10_000 } to the execFileSync git status --porcelain call in the handle_sub_repos dirty-scan (repo convention: every git subprocess is bounded, never hangs). Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> * chore: regenerate INVENTORY-MANIFEST after rebase onto next Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> * fix(#666): handle rename staging and split changedFiles from filesToStage For git mv renames, the old path no longer exists in the worktree after the move — staging it with git add fails. Split parsing into changedFiles (both paths, for result.files) and filesToStage (new path only for renames; old is already staged by git mv). Also adds porcelain tests for staged renames, non-ASCII filenames, and a fast-check property test. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> * fix(#666): rollback on push failure in cmdPrSubrepo If push fails the branch only exists locally; rollback cleans it up so the sub-repo is not left in a half-committed state. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> * fix(#666): do not rollback after commit on push failure; add push-fail regression test Post-commit push failures are network/auth/policy issues — the user's work is already committed on the local branch. Calling rollback() at that point force-deletes the only ref holding the commit (data loss). Leave the branch in place and emit a retry instruction instead. Adds a regression test (pre-receive hook that rejects all pushes) asserting the branch and commit survive a push rejection so the failure path stays covered going forward. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> * chore: regenerate INVENTORY-MANIFEST after rebase onto next Rebased onto current next (#1267 retired core.cjs). Stale tsbuildinfo and a leftover bin/lib/core.cjs build artifact were masking the drift — wiped both, rebuilt clean, and regenerated the manifest. gen-inventory-manifest --check now exits 0. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> * fix(#666): validate sub-repo paths before git invocation in pr-branch.md The handle_sub_repos workflow ran git -C on raw planning.sub_repos config values at two points before the pr-subrepo seam's validatePath guard ever ran: the dirty-scan detection (git status) and the base-branch resolution (git ls-remote / remote show). A traversal entry could point git outside the workspace; an embedded newline could inject a spurious record into the newline-joined dirty-file output and into the shell-interpolated commit message. Adds a containment check + character allowlist to the dirty-scan node script (reject before any execFileSync), and a defense-in-depth shell case guard on the same value before the second, independent git -C invocation in the base-branch resolution block. Adds a behavioral test that extracts and executes the actual shipped node script from pr-branch.md (not a mirror) against a real traversal target and an embedded-newline entry, asserting neither reaches git or the dirty-file output. Also updates the stale cmdPrSubrepo doc comment: push failures no longer delete the branch (see prior commit), only stage/commit failures do. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> * test(#666): make sub-repo traversal scan test genuinely fail-first The outside repo's only change was an untracked file, which the ?? filter excludes — so the repo looked clean even with the guard removed, making the traversal assertion vacuous (it passed against a neutered guard). Commit the file first, then modify it, so the outside repo has a tracked dirty change: without the path guard it WOULD be reported dirty, so the test now fails-first. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#666): symlink-safe (realpath) sub-repo containment in pr-branch.md Finding A from re-review: the workflow guard used path.resolve, which only normalizes '..' textually and does not follow symlinks — so an in-tree symlink whose name has no '..' or '/' (e.g. "evil" -> /outside) passed both the charset filter and the resolve+startsWith check, letting git status / ls-remote / remote show run against a directory outside the workspace. The pr-subrepo seam already used fs.realpathSync (validatePath); this brings the workflow layer to parity. - dirty-scan: realpathSync the root once, and realpathSync each candidate before the containment check; skip on throw. - base-branch resolution: replace the weak `case *..*|/*` guard with a realpath containment check that yields a validated absolute SUB_REPO_DIR, and run git -C against that instead of re-concatenating $ROOT/$REPO_REL. - security test: add a symlink-escape entry and a positive control (legit in-root backend must still be reported). Confirmed fails-first — regressing the scan to path.resolve makes the symlink case leak. Also fixes a misleading-fallback minor: the workflow now checks the seam's exit status and skips the companion-PR step on failure, instead of printing "branch pushed, open PR manually" after a real stage/commit/push failure. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#666): harden pr-branch sub-repo flow against round-12 edge cases Pre-emptive hardening of the workflow changes from the symlink fix: - continue-outside-loop: the "skip companion PR on seam failure" block used a bash `continue`, but the per-sub-repo iteration is prose-driven (the agent loops, not a literal `for`), so `continue` would warn and no-op. Reframed as prose-gated control flow keyed on $SUBREPO_EXIT — no bash loop assumption. - Windows portability: the new symlink security case now degrades gracefully (try/catch around fs.symlinkSync; skip just the symlink assertion when symlink creation lacks privileges) so it doesn't hard-fail on Windows CI. Verified: seam exits 1 on error / 0 on success (error() → process.exit(1), propagated through the shim), so the $SUBREPO_EXIT check is meaningful; bash -n clean on the touched blocks; commands 156/156; lint:ci green; manifest in sync. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com> Co-authored-by: Tom Boucher <trekkie@nomorestars.com>	2026-06-21 22:34:00 -04:00
Tom Boucher	645601a10d	refactor(#1286): T4 — migrate 5 large destructure callers off the core spine (batch 3) (#1287) ... Migrate the entire core surface of commands (~23 symbols), phase (~17), roadmap, state, template to the leaf modules directly (behaviour-identical — leaves are the objects core re-exports by reference). All 5 now import zero core symbols and are removed from the allowlist (9 -> 4). Dropped a dead `void replaceInCurrentMilestone` from phase.cts; stale core.cjs docstrings fixed. core.cts re-exports untouched (serve the remaining 4 idiom-hard files); teardown is T-final. No behaviour change. Closes #1286 Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>	2026-06-15 17:03:22 -04:00
Tom Boucher	be132445aa	fix(#1159): phase complete ignores historical/deferred requirement metadata (#1197) ... * fix(#1159): phase complete ignores historical/deferred requirement metadata Defect A: `phase complete` emitted a false "has unresolved gaps" warning when a VERIFICATION.md file's frontmatter contained `status: passed` but the body contained `previous_status: gaps_found`. The full-text regex `/status: gaps_found/` matched the substring inside `previous_status: gaps_found`, producing a spurious warning. Fixed by reading only the frontmatter `status` key via `extractFrontmatter` in both `phase.cts` (phase complete warning check) and `commands.cts` (determinePhaseStatus). Defect B: requirement IDs under explicitly deferred/backlog/future/v2 section headings in REQUIREMENTS.md were flagged as missing from the Traceability table. Fixed by splitting the body into markdown sections, detecting deferred-intent headings via a keyword regex, and skipping those sections when collecting IDs to check against the table. Both fixes include boundary tests (false positive suppressed; genuine gap/missing warnings still fire) in 4-phase-complete-cjs-regression.test.cjs. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(#1159): address adversarial-review findings (subheading + case sensitivity) - Defect B: Replace section-split approach with line-by-line depth-tracking to correctly propagate deferred status to sub-headings and ignore headings inside fenced code blocks. Previously `## Future Backlog` / `### Sub` would leak sub-heading IDs (split created a new non-deferred section per heading). - Defect A/commands: restore case-insensitive status matching via toLowerCase() to match the prior /status:\s*passed/i regex semantics. - Add test #1159-B-4 covering the nested-subheading case. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * docs(changeset): backfill PR number for #1159 fix Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>	2026-06-14 00:00:37 -04:00
Tom Boucher	1d90ad3c30	fix(commands): route nested sub_repos by longest prefix, not array order (#1130) ... groupFilesBySubrepo selected the first sub_repos entry in array order whose prefix matched a file, so a file under a more-specific nested sub-repo (e.g. packages/core/widget.js with sub_repos ["packages", "packages/core"]) was mis-routed to the less-specific parent ("packages"). Select the longest (most-specific) matching prefix within each first-segment bucket instead, making routing independent of sub_repos array order. String()-guard the length comparison so non-string entries still never throw (preserves the #311 tolerance). Update the stale doc comment that claimed first-match semantics. Closes #391. Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>	2026-06-12 17:33:26 -04:00
Tom Boucher	cb2cda1865	fix(#904): normalize phase number in init.execute-phase branch_name (#909) ... Wrap the {phase} substitution in normalizePhaseName() at both fix sites: - src/init.cts — cmdInitExecutePhase branch_name output - src/commands.cts — cmdCommit pre-execution branch derivation When project_code is set (e.g. "CK"), extractPhaseToken returns the full prefixed token "CK-01" as phase_number. Without normalization the generated branch was "gsd/phase-CK-01-foundation"; after this fix it is "gsd/phase-01-foundation", matching the documented {phase} contract (padded numeric only). Adds a regression test in tests/init.test.cjs. Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>	2026-06-08 22:51:38 -04:00
Tom Boucher	7e1112c28f	refactor(#56): retire legacy runtime directory helpers into runtime-homes projection (#802) ... * refactor(#56): retire legacy runtime directory helpers into runtime-homes projection Consolidate per-runtime global config-dir resolution onto the single canonical projection runtime-homes:getGlobalConfigDir. Extend it with the explicitDir override (CLI --config-dir) and the opencode/kilo OPENCODE_CONFIG/KILO_CONFIG file-path precedence the installer helpers had, making it byte-for-behavior equivalent to the old getGlobalDir across all 15 install runtimes. Delete bin/install.js's getGlobalDir/getOpencodeGlobalDir/getKiloGlobalDir (and the orphaned local expandTilde), repoint all 9 call-sites, and remove getGlobalDir from module.exports (net -242 lines in the installer). Migrate the 5 test importers to the canonical projection; harden default/XDG assertions against ambient *_CONFIG env vars. getAgentsDir now respects OPENCODE_CONFIG/KILO_CONFIG consistently with the installer (intentional convergence). Update CONTEXT.md Installer Module entry. Completes the installer-refactor chain #58 -> #60 -> #56. Closes #56 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#56): add changeset for runtime directory helper retirement Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>	2026-06-07 12:24:04 -04:00
Tom Boucher	7e76f1a736	feat(#703): add --granularity override flag to /gsd:plan-phase (#750) ... * feat(#703): add --granularity override flag to /gsd:plan-phase Add a `--granularity <coarse|standard|fine>` flag to /gsd:plan-phase that overrides the configured planning granularity for a single invocation. The override is a new highest-priority tier above the existing precedence chain (granularities[phaseType] -> granularity -> planning.granularity -> 'standard') in resolveGranularityInternal; when the flag is absent, resolution is byte-for-byte unchanged. cmdInitPlanPhase now resolves with phaseType 'planning' so granularities.planning participates, and emits the resolved value in the init JSON, which the plan-phase workflow forwards to the planner prompt. Invalid values are rejected at the CLI boundary via a shared assertValidGranularityOverride helper. Closes #703 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#703): set changeset pr to 750 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>	2026-06-06 23:56:53 -04:00
Tom Boucher	b238baddbf	fix(#663): resolve open CodeQL/Dependabot security alerts (ReDoS, prototype pollution, workflow perms, qs DoS) (#665) ... * fix(#663): resolve open CodeQL/Dependabot security alerts - ReDoS: collapse ambiguous nested quantifiers in phase-heading regexes (verify/validate/commands) and the plan-filename lookahead (phase) to provably-equivalent non-backtracking forms - prototype pollution: guard __proto__/constructor/prototype in setConfigValue - remove dead no-op .replace(/-/g,'-') in phase.cts - escape all regex metachars in bug-2839 test - add contents:read permissions to security-scan + install-smoke workflows - pin qs >= 6.15.2 via overrides (DoS GHSA) - broaden prompt-injection allowlist to translated security-model docs Closes #663 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * test(#663): regression tests for prototype-pollution guard and roadmap-phase ReDoS Behavioral test that config-set rejects __proto__/constructor/prototype keys without polluting Object.prototype, plus a ReDoS guard (timing-bound) and behavior-preservation assertions for the collapsed phase-heading regexes. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * test(#663): make ReDoS regression assert structured result, not elapsed time Replace elapsed-time assertions (which tripped local/no-elapsed-assertion ESLint rule and were unsound for synchronous ReDoS) with structured-result assertions on adversarial inputs: assert that malformed phase headings/ unchecked-item lines without a terminating colon/space yield an empty Set, which is both the correct behavior and an exercise of the fixed linear regex on the catastrophic-backtracking input shape. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#663): add Security changeset fragment for #665 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * test(#663): fold prototype-pollution regression into config.test.cjs The standalone bug-663-config-prototype-pollution.test.cjs was a 9th config-module test file, tripping lint-test-file-count (the allowlist is ratcheted and must not grow). Consolidated into config.test.cjs instead. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>	2026-06-04 08:54:15 -04:00
Tom Boucher	56a815c722	fix(#628): read snake_case requirements_completed in summary-extract (#640) ... * fix(#628): read snake_case requirements_completed in summary-extract cmdSummaryExtract read only the kebab frontmatter key `requirements-completed`, but the tool's own JSON output key and the milestone-audit `--pick` both use the snake form `requirements_completed`. A SUMMARY written in the snake form the tool itself emits was silently read back as [] — a false negative in milestone requirement traceability with no diagnostic. Make the reader tolerant of both key forms (kebab takes precedence), so a round-tripped field is no longer dropped. extractFrontmatter does no hyphen<->underscore normalization, so distinct keys had to be read explicitly. Adds regression tests: snake-only fixture now returns the IDs, and a both-forms-present fixture asserts kebab precedence. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#628): add changeset for summary-extract snake-key fix Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>	2026-06-03 08:06:31 -04:00
Tom Boucher	df04aae5e4	enhancement(#537): migrate all hand-written bin/lib/*.cjs to TypeScript source of truth (ADR-457) (#602) ... * enhancement(#537): migrate code-review-flags to TS source of truth Collapse the hand-written get-shit-done/bin/lib/code-review-flags.cjs to a TypeScript source of truth (src/code-review-flags.cts), compiled by tsc to a gitignored .cjs build artifact at the same path, per ADR-457 (build-at-publish). Second module after the semver-compare pilot (#541). Behaviour is preserved byte-for-behaviour (characterization test added in tests/code-review-flags.test.cjs locks the parser quirks). Adds compile-time type checking: CodeReviewFlags interface + CodeReviewWorkflow literal union. The require() path is unchanged, so code-review.md and the bug-3727 test keep working. The emitted .cjs is gitignored and eslint-ignored, mirroring the pilot. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate 9 leaf bin/lib modules to TS source of truth ADR-457 build-at-publish, batch 1 (pure leaf modules, 0 sibling-deps): 001-legacy-orphan-files, context-utilization, redaction, artifacts, command-arg-projection, clock, ui-safety-gate, review-reviewer-selection, clusters. Each moves to src/*.cts (strict TS, typed), compiled by tsc to a gitignored .cjs at the same require() path; behaviour preserved byte-for- behaviour. Adds src/node-globals.d.ts (minimal ambient shim; "types":[]). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#537): add @types/node, drop hand-rolled node-globals shim ADR-457 migration infra: replace the temporary src/node-globals.d.ts ambient shim with @types/node@22 + "types":["node"] in tsconfig.build.json. Unblocks migrating the ~49 remaining bin/lib modules that use node:fs/path/os/ child_process. Build + full suite (3030 pass) + lint all green; no .cts type changes were needed (real Node types matched the shim). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate 9 more bin/lib modules to TS (batch 2) ADR-457 build-at-publish. Clean leaves: installer-migration-report, prompt-budget. Type-error-prone leaves (were tsconfig.lint-excluded; now strict-typed and removed from that exclude list): secrets, phase-lifecycle, workstream-name-policy, decisions, validate, schema-detect. Plus runtime-name-policy. Strict type fixes narrow unknown->concrete domain types (no any/ts-ignore); behaviour preserved. Full suite green, lint 0 errors. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate runtime-slash to TS (cross-import proof) ADR-457. First cross-module TS->TS import: src/runtime-slash.cts imports ./runtime-name-policy.cjs and tsc resolves the sibling .cts types under strict (no declaration files; NodeNext .cjs->.cts mapping), emitting a correct require("./runtime-name-policy.cjs"). Confirms the recipe for coupled modules, which must be migrated in dependency order (leaves-up). Suite green, lint clean. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate 10 more bin/lib modules to TS (batch 3) ADR-457 build-at-publish, Wave-1 leaves: event, workstream-inventory-builder, plan-scan, fallow-runner, project-root, installer-migration-authoring, update-context, 000-first-time-baseline, runtime-homes, model-catalog. Strict typing fixed real issues (narrowing unknown, qualified fs/path calls, removed unnecessary casts); plan-scan/project-root/workstream-inventory-builder dropped from tsconfig.lint exclude. Behaviour preserved; suite green, lint 0 errors. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate 5 large Wave-1 leaves to TS (batch 4) ADR-457 build-at-publish: configuration, state-document, shell-command- projection (42 dependents), security, command-aliases. shell-command- projection keeps a namespace child_process import for mock-intercept testability. loadConfig/migrateOnDisk emit synchronously (every caller uses them sync; the one awaited migrateOnDisk caller tolerates a non-Promise) — full suite (3030 pass) confirms behaviour preserved. configuration/ state-document/command-aliases dropped from tsconfig.lint exclude. Also fixes the malformed batch-3 changeset frontmatter (type/pr) that failed lint:docs. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate 6 Wave-2 modules to TS (batch 5) ADR-457 build-at-publish: config-schema, model-profiles, 002-codex-legacy-hooks-json, logger, active-workstream-store, adr-parser. First batch importing already-migrated siblings (configuration, model-catalog, shell-command-projection, redaction, security) via ./sibling.cjs specifiers. Strict type narrowing (typeof guards over String(unknown)); behaviour preserved; suite 3030 pass, lint 0 errors. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate 5 large Wave-2 modules to TS (batch 6) ADR-457 build-at-publish: graphify, install-profiles, intel, installer-migrations, worktree-safety. installer-migrations preserves its dynamic require() loader for numbered migration modules (scoped lint suppressions). Strict typing (typeof guards over String(unknown)); behaviour preserved; suite 3030 pass, lint 0 errors. Wave 2 complete. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate Wave-3 modules to TS (batch 7) ADR-457 build-at-publish: planning-workspace, runtime-artifact-layout, command-routing-hub, drift. Uses `import x = require()` for export= siblings; drift's lazy require of runtime-slash hoisted to a top-level import (verified non-circular). Behaviour preserved; suite 3030 pass, lint 0 errors. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate small Wave-4 modules to TS (batch 8) ADR-457 build-at-publish: cjs-command-router-adapter, phase-command-router, surface, roadmap-upgrade. Typed the hub router handler results as the HubResult discriminated union; surface drops 4 genuinely-unused imports. Behaviour preserved; suite 3030 pass, lint 0 errors. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate core hub (2.5k LOC, 68 dependents) to TS (batch 9) ADR-457 build-at-publish: get-shit-done/bin/lib/core.cjs -> src/core.cts, preserving all 63 exports via export=. All sibling deps already migrated (shell-command-projection, model-profiles, model-catalog, worktree-safety, planning-workspace, project-root, configuration, config-schema). Strict types, no any/ts-ignore; config-schema lazy require hoisted (non-circular). Behaviour preserved (independently verified: core's shard 3030 pass / 0 fail). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * test(#537): make ESLint-coverage + test-sprawl checks migration-aware #551 test hardcoded 12 now-migrated modules as "hand-written, must be linted"; that invariant is obsoleted by the ADR-457 migration. Rewrite it to a filesystem-driven invariant that holds at every stage: a bin/lib/*.cjs must be eslint-ignored IFF it has a src/*.cts source (tsc-generated), else linted (covers package-identity, which has no TS source). Also eslint-ignore config-types.cjs (has a src counterpart) and drop the redundant tests/clock.test.cjs (clock already covered by clock-seam + bug-474 tests), which tripped the lint-test-file-count ratchet. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate 9 Wave-5 router/inventory modules to TS (batch 10) ADR-457 build-at-publish: phases/verify/init/agent/task/validate/roadmap/state command routers + workstream-inventory. Router handler results typed against core's exported shapes; behaviour preserved (caught+fixed a --verify boolean flag regression mid-migration). Full suite green across all shards (only the 4 local gpg-env changeset-notes failures remain; CI passes them). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate 7 Wave-5 modules to TS (batch 11) ADR-457 build-at-publish: gap-checker, docs, check-command-router, frontmatter, learnings, gsd2-import, profile-pipeline. Behaviour preserved; full suite green across all shards (only the 4 local gpg-env failures remain). Also broadens atomic-write-coverage.test.cjs to accept the tsc-compiled namespace-import form while still asserting platformWriteSync is called (safety guard intact). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate config + profile-output to TS (batch 12) ADR-457 build-at-publish: config (729 LOC), profile-output (1142 LOC). All exports preserved; cmdMigrateConfig de-asynced (migrateOnDisk is sync, awaited caller tolerates it). Behaviour preserved; suite green across all shards (only the 4 local gpg-env failures). Wave 5 complete. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate 5 Wave-6 modules to TS (batch 13) ADR-457 build-at-publish: template, uat, workstream, roadmap, audit. Behaviour preserved (dead toPosixPath import dropped from audit; inline requires hoisted). Suite green across all shards (only the 4 local gpg-env failures). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate commands + state hubs to TS (batch 14) ADR-457 build-at-publish: commands (1305 LOC), state (2074 LOC, 17 dependents). All exports preserved; inner requires kept non-hoisted where load-order matters (install.js, per-call security); acquireStateLock cast inlined to preserve the err.code source token a structural test inspects. Behaviour preserved; suite green across all shards (only the 4 local gpg-env failures). Wave 6 complete. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate milestone to TS (batch 15a, hand-authored) ADR-457 build-at-publish: milestone -> src/milestone.cts. Authored directly (subagent capacity was unavailable). Also relaxes core.output()'s 3rd param to optional, matching its real always-optional call contract (unblocks remaining 2-arg output callers). Behaviour preserved; suite green across all shards (only the 4 local gpg-env failures). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate phase, verify, init to TS (batch 15, final modules) ADR-457 build-at-publish, Wave 7 (the last hubs): phase (1608 LOC), verify (1615), init (2113). Adds src/package-identity.d.cts so verify can import the permanently value-baked package-identity.cjs under strict TS. Fixes two regressions the migration introduced in verify: restore cmdValidateHealth's `return result` (callers/tests read result.warnings — it is NOT side-effect-only), and make the bug-3384 source-pattern test tolerant of the tsc-compiled bracket-notation form of the git_list_failed->W020 branch (behaviour intact). Full suite green across all shards (only the 4 local gpg-env failures); lint 0 errors. All 86 migratable bin/lib modules are now TypeScript sources. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#537): finalize ADR-457 migration — retire tsconfig.lint.json All hand-written bin/lib/*.cjs are now src/*.cts sources, so the checkJs stopgap tsconfig.lint.json (unused; not wired into eslint, scripts, or CI) is deleted per ADR-457's final step. Also gitignore the tsc-generated config-types.cjs (was still committed) for consistency with every other emitted artifact. package-identity.cjs stays value-baked (declared via src/package-identity.d.cts). Suite green; #551 ESLint-coverage test green. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#537): add prepare script so unpacked/git installs build bin/lib artifacts ADR-457 build-at-publish: bin/lib/*.cjs are now gitignored, built by tsc. The prepack/prepublishOnly hooks cover `npm pack`/publish, but `npm install -g <dir>` and git installs run the `prepare` lifecycle — which was missing — so the unpacked install shipped without the compiled .cjs and failed at startup with "Cannot find module './lib/core.cjs'" (caught by the smoke-unpacked CI job). Add `prepare` mirroring prepublishOnly (build:lib + build:hooks). prepare does NOT run for registry consumers (they get the pre-built tarball), only for source/local/pack installs. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#537): make CI build/lockfile checks work with gitignored bin/lib artifacts ADR-457 build-at-publish exposed two CI assumptions that bin/lib/*.cjs are always present on disk: - check:env's lockfile-sync ran `npm ci --dry-run`, which now triggers the `prepare` build (tsc) — but it runs before deps are installed, so tsc is absent and it misreported the lockfile as out of sync. Add --ignore-scripts (a lockfile check must not build). - the lint-tests job installs with --ignore-scripts (no prepare build), but lint:skill-deps require()s the built install-profiles.cjs. Add an explicit `npm run build:lib` step after install. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#537): narrow prepare to build:lib only (unbreak packed-smoke pack step) prepare running build:hooks emitted "✓ Copying ..." stdout during `npm pack`, which the install-smoke "Pack root tarball" step captures into $GITHUB_OUTPUT — breaking it with "Invalid format". build:lib (tsc) is silent on success and is all the unpacked/source install needs (the smoke-unpacked assertions exercise gsd-tools, i.e. bin/lib, and tolerate hook setup with `|| true`). Matches prepack. build:hooks still runs on prepublishOnly for real publishes. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#537): wire Stryker mutation gate to build-at-publish layout The gate scored 0.00 because it mutated changed bin/lib/*.cjs that (a) were generated artifacts and (b) included modules with no coverage in the command's test set. Rework: mutation.yml now derives changed COVERED modules from src/*.cts and maps them to their built bin/lib/*.cjs; Stryker mutates those built artifacts with a no-rebuild command (mutating src/*.cts + per-mutant tsc was ~3x over the 30-min CI budget). NOTE: with the gate now correctly measuring the covered modules, their actual mutation score is 42.94% (< break 50) — a pre-existing test-coverage gap (adr-parser/prompt-budget/etc.), not introduced by this behaviour-preserving migration. Reaching 50 needs more tests, a threshold/scope change, or a waiver — a maintainer decision. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * test(#537): raise mutation coverage of covered modules above the 50 gate Adds focused example-based unit tests that kill surviving mutants in the two lowest-scoring covered modules: - tests/prompt-budget.unit.test.cjs (112 tests): 17.9% -> 97.9% - tests/adr-parser.unit.test.cjs (205 tests): 44.7% -> 89.4% Both wired into stryker.config.mjs's command. Fresh full run over the 6 covered modules now scores 82.25% (>= break 50); every covered module is >= 68%. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537,#609): parallelize mutation gate via dynamic per-module matrix The serial Stryker run timed out at 30 min once the migration's added tests made every mutant re-run ~300 tests. Replace it with a dynamic matrix so the gate completes well under budget — folded into this PR (was tracked as #609) because it's a prerequisite for this PR's mutation gate to pass. - scripts/mutation-matrix.cjs: single source of truth (covered-module -> test files) computing changed covered modules from git diff -> {has_work, matrix}. - mutation.yml: detect -> dynamic `matrix: fromJSON(...)` mutate job (one parallel shard per changed module, scoped via MUTATION_TEST_CMD to only that module's tests, 15-min/shard) -> summary job that KEEPS the legacy check name "Stryker mutation score (changed files only)" so branch protection is unchanged. Per-shard jobs report as "Stryker (<module>)". - stryker.config.mjs: commandRunner.command reads MUTATION_TEST_CMD (falls back to the full command locally). Closes #609. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * test(#537,#609): give each mutation shard ≥50% on its own tests; drop blacksmith note Per-module sharding revealed that active-workstream-store (46.5%) and frontmatter (7.4%) only cleared 50% in the old serial run via timeout-noise from the bloated 300-test command; on their own tests they were below the gate. Add focused unit tests: - tests/active-workstream-store.unit.test.cjs (115 tests): 46.5% -> 81.9% - tests/frontmatter.unit.test.cjs (165 tests): 7.4% -> 63.4% Both wired into scripts/mutation-matrix.cjs (per-module test map) and stryker.config.mjs DEFAULT_TEST_CMD. All 6 covered modules now clear break:50 with only their own tests (config-schema/context-utilization/prompt-budget/ adr-parser already did). Also removes the leftover blacksmith TODO comment — GitHub-hosted runners only; speed comes from parallel per-module shards. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * test(#537,#609): strengthen prompt-budget tests to clear the gate on its own tests prompt-budget scored 39.58% when mutation-tested with ONLY its own tests (the way the per-module CI shard runs it) — an earlier ~98% reading was inflated by accidentally running the full multi-module command. Add 96 targeted tests to tests/prompt-budget.unit.test.cjs (exact note-template text, plan-truncation arithmetic/percentages, drop-block strings, noteInjected/hardFailed booleans): scoped score 39.58% -> 68.75% (>= break 50). All 6 covered modules now clear the gate on their own tests. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>	2026-06-02 11:45:01 -04:00