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Author SHA1 Message Date
Tom Boucher
929e02cb2c enhance(#3885): no silent swallow, and no verdict manufactured from dropped data (#3925) 
* test(#3885): failing-first coverage for the depth bound and the manufactured wave verdict

ADR-3473 §8.5 says a swallowed failure may not become an authoritative-looking
answer. Three families do exactly that today; this commit pins each one RED.

Measured on this tree, 2026-08-27:

  intel query, .planning/intel/file-roles.json nested 12000 deep
    -> exit 1, "Error: Maximum call stack size exceeded"
       searchJsonEntries / matchesInValue carry no depth parameter at all.
       The MAX_JSON_SEARCH_DEPTH = 48 bound existed in the retired SDK lineage
       (sdk/src/query/intel.ts at 11918dcc3^) and the surviving .cts lineage
       never received it.

  same fixture nested 48 and 49 deep
    -> both return total=1 at exit 0, truncated=undefined
       Nothing distinguishes "searched to the bottom" from "stopped looking".

  query phase-plan-index, a plan whose depends_on names an unresolvable token
    -> warnings: ["Plan 03-02: declared wave: 2 but depends_on DAG places it
                  in wave 1"]
       The token is never mentioned. computeDependencyLevels drops the edge
       with `if (!resolvedDep) continue;`, every plan becomes a root, and the
       tool then reports the author's correct wave: as the thing that is wrong.

  countPhasePlansAndSummaries with fs.readdirSync throwing EACCES
    -> hasContext:false, indistinguishable from a phase that simply has no
       CONTEXT.md. context_read_error is undefined.

The shapes these tests assert against, chosen here so the implementation has a
target rather than inventing one later: `truncated: boolean` on the intel query
result, `unresolved: Array<{plan, token}>` from computeDependencyLevels, and
`context_read_error: string | null` per analyzed phase.

Deliberately green, and they must stay that way — each stops the fix from
over-firing:

  depth 48 is found and NOT flagged truncated (the ceiling is inclusive)
  a shallow miss reports no truncation           (noise control, N1)
  10,000 siblings at depth 2 are unaffected      (the bound is DEPTH, N2)
  a genuine wave: mismatch on a fully-resolved DAG still warns (N3)
  a genuinely missing directory is absent, not an error
  the emitted depends_on display mapping still passes an unresolved token
    through verbatim — already pinned by the existing #3785 test, so no
    duplicate was added

T31 asserts at the consumer's output per ADR-3180 Decision 4(b): it runs the
real CLI and reads the emitted JSON, because a unit assertion on
computeDependencyLevels would have passed throughout #3427's life.

Design:      .gsd/phase/feat-3885-no-silent-swallow/40-design.md
Test matrix: .gsd/phase/feat-3885-no-silent-swallow/50-test-matrix.md

Refs #3885

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

* enhance(#3885): no silent swallow, and no verdict manufactured from dropped data

Implements ADR-3473 §8.5. A failure or a gap in the input stops being absorbed
into an output that reads as authoritative.

The recursion bound, restored but NOT verbatim (src/intel.cts)

  MAX_JSON_SEARCH_DEPTH = 48 is threaded through searchJsonEntries and
  matchesInValue, which carried no depth parameter at all. The bound existed in
  the retired SDK lineage (sdk/src/query/intel.ts at 11918dcc3^) and the
  surviving .cts lineage never received it — §8.3's "a consolidation may not
  delete an invariant along with the surface that held it", demonstrated.

  Measured before: a .planning/intel file nested 12000 deep exits 1 with
  "Error: Maximum call stack size exceeded". Reachable from a project document.

  The original returned a bare `false` at the ceiling. Restoring that verbatim
  would trade a crash for a silent "no match" when the truth is "I stopped
  looking" — the same class this epic exists to close, and ADR-3473 Decision 4
  forbids it. So the bound carries a truncation signal:

    nesting 47 -> found,     truncated false
    nesting 48 -> found,     truncated false      (the ceiling is inclusive)
    nesting 49 -> not found, truncated TRUE
    nesting 12000 -> exit 0, truncated TRUE, no RangeError

  A shallow document that simply has no match reports truncated FALSE — the
  flag means "I stopped early", never "I found nothing", or it would be noise.
  The bound is on DEPTH: 10,000 siblings at depth 2 are unaffected.

The dropped edge is named, and stops being blamed on the author (src/phase.cts)

  computeDependencyLevels dropped every unresolvable depends_on token with a
  bare `continue`. Each drop makes a plan a root, so the whole phase collapses
  to wave 1 — and cmdPhasePlanIndex then reported the author's CORRECT wave: as
  the thing that was wrong.

  Before:
    warnings: ["Plan 03-02: declared wave: 2 but depends_on DAG places it in
                wave 1"]
  After:
    warnings: ["Plan 03-02: depends_on token \"nonexistent-token-3427\" does not
                resolve to any plan in this phase — edge dropped, wave placement
                for this plan may be unreliable"]

  The suppression is PER PLAN, never blanket: a plan with a fully-resolved DAG
  and a genuinely wrong wave: still gets the mismatch warning. resolveDependencyId
  stays two-tier — the shortFormToId third tier is §8.3/Phase 6's rule and is
  deliberately not built here. The emitted depends_on display mapping still
  passes an unresolved token through verbatim (#3785).

No artifact from failed inputs (gsd-core/workflows/review.md, #3352)

  A failed lane leaves no result file, so "every lane failed" is exactly "the
  aggregate JSONL has zero lines" — the gate condition already existed as a
  byproduct. REVIEWS.md is no longer written in that case, and the commit step
  is skipped with it. A budget-SKIPPED lane also leaves no file and is NOT
  counted as a failure. Per-lane output and non-empty .err are preserved to
  .review-diagnostics/ before `rm -rf "{run_dir}"` destroys the only record that
  the lanes failed at all; the commit step names one file, never a glob, so the
  diagnostics are not swept in.

Unreadable is not absent (roadmap.cts, gap-checker.cts, init.cts x2)

  Four callers collapsed an EACCES on a phase directory into [] and reported
  hasContext:false — byte-identical to a phase that simply has no CONTEXT.md.
  Each now names the directory it could not read. A genuinely missing directory
  stays absent rather than becoming an error, which is what keeps the fix from
  over-firing.

Fatal errno folded into a retry set: audited, no defect found

  Reported as a verified negative rather than padded with a change.
  withPlanningLock was fixed by #1884/PR #3472; acquireStateLock by #3776;
  atomicRenameWithRetry and estimate-cli's renameWithRetry are correct by
  construction — bounded set {EPERM,EBUSY,EACCES}, bounded attempts, and they
  return or rethrow the final error rather than swallowing it. estimate-cli's
  sole caller surfaces that rethrow as write_error in its JSON output.
  Manufacturing a diff to make the checkbox look worked-on is the Goodhart
  outcome Decision 6 exists to prevent.

Disclosed: R46 (the commit step names one file, never a glob) is a real
regression guard but is NOT independently failing-first — the commit fence is
byte-identical pre- and post-fix, so it only fails pre-fix through its shared
extraction dependency. Recorded rather than claimed as fail-first.

Design:      .gsd/phase/feat-3885-no-silent-swallow/40-design.md
Test matrix: .gsd/phase/feat-3885-no-silent-swallow/50-test-matrix.md

Refs #3885

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

* fix(#3885): escape untrusted tokens, and stop cleanup destroying unpreserved evidence

Two review findings, both real, both in my own change.

An isolated adversarial review found the evidence-preservation block never
checked mkdir/cp exit status while `rm -rf "{run_dir}"` ran unconditionally in
a SEPARATE fenced block. A disk-full or unwritable phase directory therefore
still destroyed the only copy of the failed lanes' output — reintroducing the
exact #3352 data loss this item exists to stop, inside the fix for it.

Preservation and cleanup are now one block, because each fenced block is a
separate execution and a shell variable cannot carry between them. mkdir -p and
each cp are exit-checked; cleanup runs only when preservation succeeded, and a
failure warns naming the intact run directory. "Nothing to preserve" is not a
failure and still cleans up. Driven three ways: success removes run_dir, failure
leaves it intact with the warning, nothing-to-preserve removes it. The failure is
induced by a file-vs-directory conflict rather than chmod 0o000, which root
bypasses.

The new unresolved-depends_on warning embedded a user-authored token verbatim:

  warnings: ["Plan 03-02: depends_on token \"evil
  Plan 03-01: FORGED WARNING\" does not resolve ..."]

The JSON wire form is safe, and the security reviewer judged it non-exploitable
for that reason. It is escaped anyway through formatDiagnosticToken — the helper
#3884 added one phase earlier for exactly this class. warnings[] is an array a
consumer naturally prints line by line, and not reusing the sibling fix is the
generative-fix-divergence shape this epic exists to close. The same treatment is
applied to context_read_error / phase_dir_read_error, which embed a phase
directory path a repository can choose, and to the fs error message, which
echoes the raw path itself.

Known limit L5 recorded: the bound is on DEPTH only. A 300,000-element shallow
array yields a 14.5MB reply with truncated:false. Correct per §8.5 and per
negative space N2, disclosed rather than left to be discovered.

Refs #3885

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

* fix(#3885): unreadable is not absent in intel.cts either, and a corrupt snapshot is not "no snapshot"

Blocker from the round-2 isolated review, and it is my own inconsistency:
this phase applied "unreadable is not absent" to phase directories and left it
broken in the file it was already editing.

  chmod 000 .planning/intel/file-roles.json
  gsd-tools intel query <term>
  -> {"matches":[],"total":0,"truncated":false}  exit 0

safeReadJson swallowed every read failure and returned null, so an EACCES was
byte-indistinguishable from an absent file AND from a genuine no-match. Now it
separates three states: ENOENT stays silently absent, because not every project
has every intel file and intelQuery loops over all of them expecting misses;
EACCES/EIO and malformed JSON are both surfaced naming the file. A corrupt intel
file previously read as "no matches" too — same defect, same fix.

Threading that outcome through the other three callers found something worse
than the reported case. intelDiff returned no_baseline:true for a corrupt or
unreadable snapshot — not a silent failure but an actively FALSE verdict, telling
the caller they never took a snapshot when they did. That is §8.5's headline
case, so it is fixed and tested rather than noted. intelStatus and
intelApiSurface collapsed the same way; intelApiSurface additionally printed a
"not yet populated" banner that was simply untrue.

Every row is failing-first, including the absent-file ones — the field is new,
so it does not exist pre-fix at all. Those rows are not pre-fix pins; they pin
that the fix does not OVER-fire on the ordinary absent case, which is what would
turn this into noise on every project lacking an intel file. IO failure is
injected by monkeypatching fs and restoring in finally, never chmod 0o000 — root
bypasses mode bits, so the reviewer's manual chmod repro is not reproducible as
a test.

Refs #3885

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

* test(#3885): build the pathological intel fixture as text, not by stringifying a nested object

The remote runner came back red on Linux with two failures, both
T4: deeplyNestedIntelDoesNotOverflowTheStack, while the same test passed on
macOS. The product was never at fault.

writeNestedFixture(12000) built a 12,000-deep JavaScript OBJECT and then
JSON.stringify'd it. JSON.stringify recurses once per level, so it overflowed
the TEST PROCESS's stack — the error was thrown before the CLI was ever spawned.
Linux's container stack is smaller than macOS's, which is the whole of the
platform difference.

Measured, with the same document built as JSON TEXT so nothing in the building
process recurses:

  depth=100    rc=0 truncated=true
  depth=5000   rc=0 truncated=true
  depth=12000  rc=0 truncated=true
  depth=60000  rc=0 truncated=true

V8 parses this shape iteratively; only stringify recurses. The bound works at
every depth tried.

The fixture is now built by string concatenation. That is also the more faithful
input — a real deeply nested JSON document on disk is exactly what the bound
guards, where a stringified object was only ever a way to produce one.

The depth stays 12000. Lowering it would have made the test pass by weakening it
to accommodate a fixture bug, and 12000 is a legitimate pathological input the
product handles. T4 remains a genuine fail-first: rebuilt against the parent of
the commit that added the bound, the string-built depth-12000 fixture still
drives the CLI to rc=1 with "Error: Maximum call stack size exceeded".

A comment records why the fixture is text, so it is not "simplified" back into a
macOS-green / Linux-red test.

Refs #3885

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

* chore(#3885): backfill the changeset PR number

Refs #3885

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

* test(#3885): normalize path separators before splicing into the workflow's bash

CI red on one lane — test (windows-latest, 24, shard 3/3). macOS, Linux and the
remote runner were all green.

  AssertionError: commit must name the single REVIEWS.md file; got:
    --files C:UsersRUNNER~1AppDataLocalTempgsd-3352-phasedir-mOKmuy/03-REVIEWS.md

Every backslash in C:\Users\RUNNER~1\AppData\Local\Temp\... was eaten. The
harness spliced an OS-native temp path into the extracted bash, and bash consumes
\U, \A, \L and \T as escapes on an unquoted expansion. The same loss broke
RUN_DIR, so "rm -rf" targeted a path that never existed and the run directory
survived — which is the other two assertions.

This is a fixture defect, not a product one, and that was checked rather than
assumed. In production the phase directory is toPosixPath-normalized at every
call site that serializes it (bin/lib/init.cjs:951, 1381, 1461, 1529, 1595), and
the run directory is created by "mktemp -d" running inside the bash block itself
(gsd-core/workflows/review.md:163), which emits POSIX-style output even under
Git-Bash on Windows. Neither ever carries a backslash where the workflow reads it.

The file's pre-existing #3034 harness splices raw native paths too, but only ever
inside double-quoted assignments, so it never tripped this — my new harness
followed that convention faithfully into the one place where it does not hold.
Both now splice through toPosixPath from shell-command-projection, the
established seam, which is a no-op on POSIX and mirrors what production does.

No assertion was weakened. "commit must name the single REVIEWS.md file" and
"the run dir must still be destroyed" still assert exactly that; only how the
fixture supplies its path changed. Nothing is skipped on Windows — a t.skip()
here would have hidden the question of whether the exposure was real, which is
the question that mattered.

Driven both ways: a synthetic C:\Users\RUNNER~1\... input reproduces the exact CI
string when unfixed and yields C:/Users/RUNNER~1/... when fixed; a POSIX input
produces a byte-identical shape, proving the normalization is idempotent.

Refs #3885

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

* test(#3885): stop the harness making the deleted run dir its own cwd

Windows shard 3/3 stayed red after the separator fix, on two assertions the
separator fix never touched:

  AssertionError: the run dir must still be destroyed
  AssertionError: nothing to preserve is not a failure — run dir must still be removed

The separators were a real bug and fixing them fixed the --files assertion. They
were not this bug, and two CI cycles went into the wrong axis before I stopped
converting path forms and looked at what the harness actually does.

runWriteReviewsFlow passed cwd: runDir to runHook, so the child bash process's
working directory WAS the directory the block under test then removes with
rm -rf "$RUN_DIR". POSIX allows a process to delete its own cwd — verified
locally, cd "$d"; rm -rf "$d" removes it cleanly — and Windows does not: a live
process's working directory cannot be removed. So on Windows the directory
survived and both assertions failed, on macOS and Linux it vanished and they
passed. Nothing to do with slashes.

Harness-only. Production never cd's into the run directory; every reference is by
absolute path, and RUN_DIR is created by mktemp -d inside the bash block itself
(gsd-core/workflows/review.md:165) rather than injected. review.md is unchanged.

Fix: the child now runs with its cwd in an unrelated temp directory that the
block under test never deletes. Neither assertion was weakened, and nothing is
skipped on Windows — the tests in this file carry no platform guard and run
there unconditionally, which is how this surfaced at all.

Honest limit: the Windows failure mode cannot be reproduced on macOS, because
POSIX permits the very thing Windows refuses. The diagnosis is grounded in that
documented divergence and in the fact that only the Windows lane failed, but the
green outcome on windows-latest is unverified until CI runs it.

Refs #3885

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

---------

Co-authored-by: sim <sim@local>
Co-authored-by: Claude Opus 5 <noreply@anthropic.com>
 2026-08-27 04:12:47 -04:00
Tom Boucher
5b5d473e13 chore(#3465): remove 22 verified-vestigial allow-test-rule markers (#3494) 
Phase 1 of #3464. Removes the `// allow-test-rule:` marker from 22 test files
where it is provably vestigial, and tightens the ratchet ceiling in
scripts/lint-allow-test-rule-refs.ceiling.json from 305 to 285.

Eligibility is decided by two independent AST discriminators, both
conservative (any doubt => keep):

(a) Read-target type. Every readFileSync/readFile call in the file resolves
    statically to a prose/config extension (.md/.json/.yml/.yaml/.toml/.txt),
    or the file performs no reads at all. Any read of a source extension
    (.cjs/.js/.mjs/.ts/.cts/.mts/.jsx/.tsx), any dynamic/unresolvable path,
    and any other extension all disqualify the file.

(b) Marker context. Every `allow-test-rule:` occurrence is a genuine comment
    node, never string- or template-literal payload. A marker that lives
    inside a RuleTester `code:` fixture is test DATA, not a suppression
    directive; stripping it corrupts the test. tests/eslint-rules.test.cjs is
    the one such fixture host and is deliberately untouched.

An earlier attempt at this phase classified markers by "strip it and see if
local/no-source-grep still passes" and was reverted in full before commit.
That oracle is unsound: the rule only fires on a literal .cjs/.js/.ts path
containing a quoted bin/lib/gsd-core/src segment, tracked one hop from the
binding, so files that genuinely source-grep real JavaScript pass it
silently -- tests/no-unbounded-spawn-allowlist.test.cjs (reads test sources
through a listTestFiles() walk) and tests/claude-imperative-reference.test.cjs
(matches bin/install.js through an intermediate variable) both cleared it
while being real source-greps. The rule's implementation is narrower than its
intent, so it cannot adjudicate whether an exemption is load-bearing.

Scope is limited to comment deletions: the diff over the test tree is 100%
line removals with zero insertions, and no executable line is altered.

On the ceiling value. The measured count at this HEAD is 283, so 285 leaves 2
slack -- deliberate, and well inside the documented grace band of 3. Pinning
the ceiling to the exact count makes this change effectively unmergeable: any
concurrent PR that lands one marker-bearing test file re-reds it. That race
fired twice while preparing this branch (once mid-rebase taking the count
304->305 on next, once between rebase and the verification run taking it
282->283), and it is the same race that broke next in #3461. A ceiling of
actual+2 preserves a merge window while still ratcheting 305 -> 285.

Known limit, disclosed rather than papered over: this clears 22 of 303
markers and does not reach #3464's trend-to-zero goal. Most of the remaining
markers sit on dynamic-path reads, commonly a hoisted `const p =
path.join(tmpDir, 'STATE.md')` whose target is prose but is unresolvable to
this classifier. A stricter one-hop const resolution would flip an estimated
95 more; that is deliberately left to a follow-up so it can be reviewed on
its own evidence.

Marker discovery reads bytes rather than shelling out to grep:
tests/security-prompt-injection.security.test.cjs carries a literal NUL byte
(an intentional injection fixture) that makes grep treat it as binary and skip
it, which is why the true marked-file count is 303 and not the 302 a shell
scan reports.

Closes #3465

Co-authored-by: sim <sim@local>
Co-authored-by: Claude Opus 5 <noreply@anthropic.com>
 2026-08-14 13:10:49 -04:00
Tom Boucher
463cffd894 chore(#604): rename get-shit-done/ runtime directory to gsd-core/ (#615) 
* chore(#604): rename get-shit-done/ runtime directory to gsd-core/

Renames the installed runtime directory `get-shit-done/` to `gsd-core/` so the
on-disk name matches the package (`@opengsd/gsd-core`), repo, and binary
(`gsd-tools`). The npm package name and binary are unchanged; npx/npm consumers
are unaffected.

Mechanical (bulk, ~90% of the diff):
- `git mv get-shit-done gsd-core`
- Swept path/identifier references across the repo via
  `perl -pe 's/get-shit-done(?!-\w)/gsd-core/g'`. The negative lookahead
  preserves the five legitimate slug variants that are NOT the directory:
  get-shit-done-{OLD,cc,classic,cli,redux} (old package/repo names).
- Build/manifest wiring: package.json (bin, files, coverage globs),
  tsconfig.build.json (outDir), ~86 .gitignore build-output entries,
  stryker.config.mjs, scan-ignore files, install.js path strings.
- Frozen (not rewritten): CHANGELOG.md history; translated docs
  (README.<locale>.md and docs/{ja-JP,ko-KR,pt-BR,zh-CN}/).

New logic (review here):
- src/installer-migrations/003-rename-get-shit-done-to-gsd-core.cts: a proper
  ADR-0008 installer migration. On upgrade it walks the legacy
  `~/.claude/get-shit-done/` tree, classifies each file via the prior install
  manifest, and emits remove-managed / backup-and-remove for managed files
  while PRESERVING unknown user-added files. Symlink-safe (skips a symlinked
  root and symlinked entries; bounds-checks every path under configDir). The
  framework rolls back on install failure. Emptied dirs may remain (framework
  has no recursive dir-removal primitive) — documented.
- scripts/lint-legacy-dir-name.cjs: CI regression guard forbidding the bare
  `get-shit-done` directory token (split token to avoid self-match; case-
  insensitive; `(?!-\w)` lookahead allows the slug variants; allowlists
  CHANGELOG, translated docs, and `gsd-allow-legacy-name` marker lines).
  Wired into the lint-tests CI job.
- Restored scripts/lint-package-identity-drift.cjs detection regexes (the
  mechanical sweep had wrongly rewritten the old-name patterns it exists to
  detect) and marked them as intentional legacy references.
- TDD tests for the migration and the guard; do.md slash-command guard regex
  tightened so a `/gsd-core/bin` path segment is not mistaken for a command;
  changeset + docs/installer-migrations.md row added.

Breaking: the installed runtime path moves `~/.claude/get-shit-done/` ->
`~/.claude/gsd-core/`. Migration 003 removes the stale legacy dir's managed
files (preserving user files) on upgrade. Users with custom hooks/configs
hardcoding the old path must update them.

Closes #604

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#604): unsweep pending changesets + allowlist injection-example docs

CI fixes for the rename PR:
- Do not sweep pending .changeset/*.md (ephemeral release-note fragments,
  like CHANGELOG); reverted those body edits so 5 pre-existing malformed
  fragments (missing type/pr) no longer enter the PR diff and trip docs-lint.
  Allowlisted .changeset/ in the legacy-name guard accordingly.
- Allowlisted TEST-EXAMPLES.md and docs/explanation/security-model.md in
  prompt-injection-scan.sh: they contain intentional injection examples /
  security-model prose; the path-reference rewrites are kept.

CodeQL alerts on this PR are pre-existing (alert lines unchanged by this PR;
none in the new migration/guard) and are out of scope for the rename.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#604): resolve CodeQL alerts surfaced on this PR

The rename diff touched files carrying pre-existing CodeQL findings; per the
no-pre-existing-dismissal rule, fixing every surfaced alert rather than waving
them off. All behavior-preserving:

- scripts/ci-test-scope.cjs: build the config-path match from string
  .includes() instead of a RegExp over an arg-derived value (js/regex-injection).
- src/profile-output.cts: escape backslashes before pipe-escaping desc/safeName
  so the table-cell escape is complete (js/incomplete-sanitization).
- tests/{bug-2643,bug-2808,docs-parity-live-registry}: two-pass HTML-comment
  strip so a bare/unclosed `<!--` cannot survive (js/incomplete-multi-character-sanitization).
- tests/inline-plan-threshold: drop the no-op `\s`->`\s` identity replace,
  keep the meaningful POSIX-class conversion (js/identity-replacement).

Verified: build:lib green; the touched test files + ci-test-scope + profile-output
suites pass; lint:legacy-name clean.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#604): correctly resolve remaining CodeQL alerts (regex-injection + sanitization)

The prior commit's fixes for two alerts were ineffective:
- ci-test-scope.cjs js/regex-injection: the alert is the CLI-arg-derived `file`
  reaching static regex `.test(file)` calls (not the config rule). Removed ALL
  regex over file/t — startsWith/includes/=== string checks + an isWindowsHint
  helper — so there is no regex sink for the tainted value.
- js/incomplete-multi-character-sanitization (3 test files): a single
  `.replace(/<!--...-->/g,'')` can let `<!--` re-form. Replaced with a fixpoint
  loop (replace until stable) plus a final bare-opener strip.

Verified: no regex over file/t remains; ci-test-scope + the 3 test suites pass;
lint:legacy-name clean.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#604): make ci-test-scope + comment-strippers regex-free to clear CodeQL

CodeQL flags the regex PATTERNS syntactically (regex-injection on the
--files arg split; incomplete-multi-character-sanitization on the <!--...-->
replace), so loop fixes do not satisfy it. Made these paths regex-free:
- ci-test-scope.cjs splitFiles: char-by-char separator tokenizer (no /[,\\s]+/).
- 3 test files: indexOf/slice HTML-comment stripper (no .replace(/<!--/)).
Behavior preserved; ci-test-scope + the 3 suites pass; guard clean.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#604): unblock security base64 scan on the large rename diff

The security job hit its 10m timeout: base64-scan.sh choked on the binary
test fixture tests/feat-3594-parser-property-style.test.cjs (embedded NUL/
non-UTF8 bytes -> thousands of bogus blobs + "ignored null byte" warnings),
and the ~800-file rename diff is slow to scan regardless.

- scripts/base64-scan.sh: skip binary-by-content files (grep -Iq .) — they
  can't carry base64-obfuscated *text* and feeding NUL bytes through the
  per-line scanner is pathologically slow. collect_files already filtered
  binary *extensions*; this catches binary *content* in text extensions.
- .github/workflows/security-scan.yml: raise the security job timeout 10m->30m
  to accommodate very large diffs (the scan itself is unchanged).

Verified locally: scan skips the fixture, 0 "ignored null byte" warnings,
0 findings, exit 0.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#604): sweep get-shit-done refs introduced by merging next

The branch was updated with next (#614/#384/#618 etc.), which reference the
get-shit-done/ dir (still named that on next). Swept the stale references in
the merged files to gsd-core so the rename stays consistent and lint:legacy-name
passes:
- commands/gsd/discuss-phase.md (runtime-launcher shim paths)
- src/core.cts (getAgentsDir layout comments)
- tests/bug-384-agents-runtime-aware.test.cjs (require path to runtime lib)

Verified: guard 0 violations; build green.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#604): exclude gsd-core/ path segments from bug-3683 command cross-ref invariant

The #614 runtime-launcher shim added to discuss-phase.md references
`${_GSD_RUNTIME_ROOT}/gsd-core/bin/...`. bug-3683's REF_PATTERN excluded path-y
refs only via lookbehind, but `}` precedes `/gsd-core/` in the shim, so it
mis-read the directory path as a dangling `/gsd-core` command ref (same class as
the #604 bug-2954 fix). Added a trailing `(?![\w-]*\/)` so `/gsd-<x>/...` path
segments are not treated as slash-command references.

Verified locally on BOTH platforms before pushing:
- mac (node 26) full suite: 0 failures
- gsd-test-runner (linux, node22 image) full suite: 0 failures
- bug-3683 + bug-2954 pass.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#604): lazily resolve findProjectRoot in gsd-tools (harden flaky CI)

CI intermittently failed state.test's gsd-tools subprocess with
"findProjectRoot is not a function" (flip-flopping across legs; not reproducible
on mac full suite, gsd-test linux full suite, test:unit, or state.test x8).
findProjectRoot is a re-export from core.cjs (sourced from project-root.cjs);
binding it via destructure at module-load can be undefined under a load-ordering
edge. Resolve it lazily at call time via a small wrapper so the lookup happens
after core.cjs is fully initialized.

Verified green on BOTH platforms before pushing:
- mac (node 26) full suite: 0 failures
- gsd-test-runner (linux, node22) full suite: 0 failures
- state.test.cjs: 106/106; gsd-tools loads cleanly.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#604): allowlist verification-patterns.md placeholder examples in secret scan

The rename git-mv'd references/verification-patterns.md into gsd-core/, pulling
it into the secret-scan diff. It documents stub/placeholder RED-FLAG env-var
examples (illustrative Stripe test-key / database-URL / API-key placeholders) —
not real credentials. Added it to .secretscanignore with the strict annotation,
mirroring the existing gsd-core/workflows/plan-phase.md exception.

Verified locally: secret-scan-lint --strict OK; secret-scan --diff origin/next
exits 0 with 0 findings.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
 2026-06-02 18:35:29 -04:00
Tom Boucher
51aac62e9a perf(#307): use head-index queue for phase dependency BFS (O(V^2) -> O(V+E)) (#383) 
The Pass-2 topological level assignment in cmdPhasePlanIndex dequeued its
Kahn's-algorithm queue with Array.shift(), which is O(n) per call in V8, so the
BFS was O(V^2) and slowed superlinearly on deep queues (wide fan-in plan
graphs). Extract the traversal into a pure, exported computeDependencyLevels
(rawPlans, planMap, canonicalToId) and dequeue via a head index (queue[head++])
-> O(V+E). Behavior is identical: same FIFO order, same longest-path levels,
same visited-count cycle detection. A complexity-contract comment above the loop
documents why shift() must not be reintroduced.

Adds tests/phase-dependency-levels.test.cjs with deterministic behavior and
edge-case coverage (linear chain, diamond longest-path, independent set, cycle,
canonical-prefix resolution, empty, self-loop, duplicate edge, external dep). A
timing-based complexity guard was intentionally omitted: the O(V+E) Map-build
constant dilutes the O(V^2) signal until impractical N (~1e6), so an empirical
guard is inherently flaky on contended CI — the contract is enforced by the
inline comment and correctness tests instead.

Fixes #307

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
 2026-05-27 20:21:12 -04:00