24 Commits

Author	SHA1	Message	Date
Tom Boucher	067a4d1c6c	fix(#2650): bound and auto-recover plan-phase planner/plan-checker stalls (#3015) ... * test(#2650): add failing-first regression for plan-phase stall detection Regression test for gsd_stall_should_recover / gsd_stall_watch and the planner.stall_* config keys, none of which exist yet — proves RED before the fix lands in the next commit. * fix(#2650): bound and auto-recover plan-phase planner/plan-checker stalls Mirrors the already-shipped executor.stall_* pattern (execute-phase.md, bug #3212) but with a dispatch change the executor's prose-only surveillance lacks: the standard planner spawn, chunked-outline planner spawn, chunked-per-plan planner spawn, plan-checker spawn, and revision-loop planner respawn now dispatch with run_in_background=true and are followed by a real, bounded bash poll (gsd_stall_watch) that returns control to the orchestrator on its own schedule instead of waiting indefinitely on a subagent that may never return. On stall, the existing accept-plans/retry/ stop recovery menu (9a/11a) is auto-surfaced instead of requiring a manual interrupt. New config keys planner.stall_detect_interval_minutes (default 5) / planner.stall_threshold_minutes (default 10) mirror executor.stall_*. The helper functions (gsd_stall_should_recover, gsd_stall_watch) live in a new lazily-loaded gsd-core/workflows/plan-phase/steps/stall-detection- helpers.md rather than inline, and per-site prose is kept minimal, because plan-phase.md is frozen under the ADR-857 Phase 6 PRE_PHASE6 gate (tests/phase6-capstone-conformance.test.cjs) with ~36 bytes of headroom at baseline; the net effect is plan-phase.md.md ships slightly SMALLER than before (the old unconditional-wait ORCHESTRATOR RULE sentences are gone at the five touched sites, superseded by the bounded watcher). Also fixes a stale doc comment in tests/workflow-size-budget.test.cjs that still described the per-file workflow-size-baseline.json guard removed by #2724 (ADR-2719 Phase 4) as if it were still the enforcement mechanism — discovered while verifying this fix's own byte budget. Researcher and pattern-mapper spawns are untouched (out of scope per the issue's Agent Brief). * fix(#2650): make gsd_stall_watch single-cycle; harden numeric config inputs Two review findings addressed on top of the prior commit: 1. gsd_stall_watch previously looped internally for the full threshold+interval duration inside ONE Bash tool call (up to 15 min at defaults) — a single call blocking that long risks the host tool's own timeout killing it before it ever prints a result, silently defeating the fix. Redesigned to a single sleep-and-check cycle per call, taking an explicit dispatch_ts so the orchestrator prose can repeat the (short, default 5 min) call until it resolves; the outer threshold is now enforced by dispatch_ts accumulating across calls, not by one call's duration. Documented the resulting trade-off (up to one interval of added latency on the success path) in the changeset and reference doc. 2. PLANNER_STALL_INTERVAL_MINUTES/THRESHOLD_MINUTES are config-controlled values that flow into bash arithmetic ($(( ))). A review flagged this as command injection; empirically verified against both macOS bash 3.2.57 and Docker bash:5 that this is NOT actually exploitable (bash hard-errors on a `$(cmd)`-shaped arithmetic operand rather than invoking it) — but an unvalidated malformed value WOULD abort the stall-watcher itself with that bash error, silently defeating the exact hang-recovery this issue ships. Added integer validation with safe-default fallback, both at the config-resolution point and defensively inside gsd_stall_should_recover. Also adds the previously-missing integration coverage for gsd_stall_watch's real execution (grep/find/date plumbing), not just the pure classifier. * fix(#2650): correct AC2 self-test — helpers doc may name teams-status in prose The AC2 regression test asserted the stall-detection-helpers.md step file never contains the substring "teams-status" at all, but the file's own prose explicitly documents its independence from that guard (containing the word by design). Narrowed the assertion to what actually matters: no second `query teams-status` call site and no gating on it, not a blanket absence of the word. * test(#2650): regenerate golden install-tree fixtures for the new step file gsd-core/workflows/plan-phase/steps/stall-detection-helpers.md is an emitted file (installed for every runtime), so adding it changes the install tree even though it is invisible to docs/INVENTORY.md and docs/INVENTORY-MANIFEST.json (both explicitly scope to non-recursive gsd-core/workflows/*.md — verified against the execute-phase #2930 and pre-existing plan-phase step-file precedent, which are equally absent from both inventory artifacts). The golden install tree snapshots the sorted list of emitted relative paths per runtime, so a file invisible to the inventory is still visible here. Regenerated via `npm run gen:install-tree` — one line added per runtime fixture (19 files), no other drift. * fix(#2650): restore 7 ORCHESTRATOR RULE labels; sync runtime-launcher preamble Two more consequences of extracting helper bodies out of plan-phase.md, both caught by verification (0017e1a78, 9 unique failures): 1. tests/plan-phase-drift-guard.test.cjs (#913) requires at least 7 "ORCHESTRATOR RULE — ALL RUNTIMES" labels in plan-phase.md itself, one per agent spawn site. Moving the full explanatory blocks to plan-phase/steps/stall-detection-helpers.md carried 5 of the 7 labels out with them (only the untouched researcher/pattern-mapper sites kept theirs). Restored a short label at each of the 5 stall-watch sites, trimmed a few more redundant words ("Per 7.99, " — already established by the adjacent step-7.99 pointer) to stay under the frozen PRE_PHASE6 cap (94497 bytes, 21 bytes headroom). 2. tests/runtime-launcher-parity.test.cjs (#373) requires exactly one canonical gsd_run preamble, byte-equal to gsd-core/workflows/_runtime-launcher.snippet.sh, before the first gsd_run call in any workflow .md that calls it (recursive scan under gsd-core/workflows/, unlike the non-recursive inventory/step-tag-balance checks). The new step file's config-get calls use gsd_run without one. Fixed via `node scripts/sync-runtime-launcher.cjs`, verified: exactly 1 preamble occurrence, before the first call, including the .claude/ and .codex/ home fallback arms. Also verified (no fix needed, evidence recorded): the generic `gsd-core-verbatim` identity rule in tests/helpers/emitted-provenance.cjs (roots: ['gsd-core'], pattern matching workflows/.+) self-attributes any new gsd-core/workflows/** path to itself, so the new step file needs no drift-ack entry — consistent with plan-phase.md's own net shrinkage requiring none either. * test(#2650): acknowledge plan-phase.md's +14 byte drift Restoring the 5 ORCHESTRATOR RULE — ALL RUNTIMES labels (#913) flipped plan-phase.md from -142 bytes (post-extraction) to +14 bytes net growth against baseline (94483 -> 94497), which the differential attribution size ratchet (tests/emitted-attribution.test.cjs) correctly flags as unacknowledged growth. Added tests/emitted-drift-acks/2650-plan-phase- stall-detection.json, keyed on the bare filename plan-phase.md per the existing fragment schema (see tests/emitted-drift-acks/2649-diagnose- execute-plan-base-check.json), explaining the growth as exactly the 5 restored labels — still verified under the PRE_PHASE6 cap (94497 < 94519) and satisfying #913's 7-label requirement. * fix(#2650): bind {outputFile} from the real Agent() return — was dead code Independent review blocker: PLANNER_OUTPUT_FILE/CHECKER_OUTPUT_FILE were read by every gsd_stall_watch call but never assigned anywhere in the diff. With the variable permanently empty, `[ -f "$output_file" ]` was always false, marker_found could never become true, and marker_received was unreachable — the marker-based detection path was permanently dead. Worse for the plan-checker spawn specifically: a checker that PASSES touches no *-PLAN.md files, so it had no working completion signal at all without the marker path. A healthy plan-checker finishing cleanly in two minutes would be declared stalled once planner.stall_threshold_minutes elapsed and the recovery menu would fire on an already-succeeded agent — worse than the original unbounded hang. Fixed by replacing the dead bash variable with the `{outputFile}` orchestrator-substitution token, the same convention docs-update.md:471 already uses for a real run_in_background=true Agent() return ("Read tool: file_path: `{outputFile from README agent result}`"). This is a net BYTE SAVING at each site (`"{outputFile}"` is shorter than `"$PLANNER_OUTPUT_FILE"`), which funded moving the full binding explanation — including why plan-checker's *-PLAN.md glob alone is not a working completion signal — into the lazily-loaded reference file to stay under the frozen PRE_PHASE6 cap (94496 bytes, 22 headroom; net +13 over baseline, acknowledged in tests/emitted-drift-acks/2650-plan-phase- stall-detection.json). Added a regression test asserting plan-phase.md itself binds {outputFile} at all 5 spawn sites and contains no dangling $PLANNER_OUTPUT_FILE / $CHECKER_OUTPUT_FILE reference — the previous test suite only exercised gsd_stall_watch's behavior when handed a valid argument, which is why the dead production wiring survived two rounds of review. Also fixed tests/fix-2650-plan-phase-stall-detection.test.cjs:170-195's raw try/finally to use t.after(), per CONTRIBUTING's test-cleanup convention. * chore(#2650): backfill changeset PR number to 3015 * fix: normalize CRLF at the read boundary in all .md-bash-extraction tests Maintainer-authorized scope expansion, folded into this PR rather than deferred: the Windows CI lane on this PR's own tests/fix-2650-plan-phase- stall-detection.test.cjs exposed DEFECT.TEST-SHELL-PIPELINE-NONPORTABLE (CONTEXT.md; recurring since #1700) as a repo-wide latent class, not a one-off. Ten test files parse a fenced ```bash block out of a workflow .md file and execute it via spawnSync/execFileSync; a Windows checkout can yield CRLF line endings despite .gitattributes eol=lf, and bash then treats the trailing \r on every extracted line as part of the token — "unexpected EOF while looking for matching `"'" or a bare syntax error, partway through the script. Added tests/helpers.cjs:readFileNormalized() — strips \r\n -> \n at the read boundary, before any fence-slicing or regex runs, so every downstream operation is correct by construction. Migrated all ten call sites to it: Previously broken (fs.readFileSync with no normalization anywhere between read and spawn): - tests/worktree-cleanup.test.cjs (extractCwdGuardBash) — also fixes a misleading comment claiming the fence regex alone was "CRLF-safe"; it protected only the fence delimiters, never the captured body. - tests/new-milestone-clear-phases.test.cjs (extractFenceBetween, extractFenceContaining) - tests/code-review-pipeline-regression.test.cjs (extractPostProcessingScript) - tests/drift-detection.test.cjs (readGate/bashBlock, plus the snippet-file comparison read in the same test) - tests/graphify-visualization.test.cjs (extractStep3Block) - tests/pause-work-improvements.test.cjs (extractCheckBlock) - tests/plan-review-convergence.test.cjs (extractReviewerFlagsParseBlock and the inline post-config-gate resolution-block slices) Already correct (split(/\r?\n/) then join('\n')), migrated to the shared helper for consistency rather than a fourth/fifth/sixth copy of the same fix: - tests/git-base-branch.test.cjs (extractHandleBranchingBash) - tests/quick-branching.test.cjs (extractStep25Bash) - tests/runtime-launcher-parity.test.cjs (extractResolverSnippet) Verified against a simulated Windows CRLF checkout (not assumed): for both the worktree-cleanup.test.cjs and new-milestone-clear-phases.test.cjs extraction shapes, confirmed the pre-fix code produces a real bash syntax error on CRLF input and the post-fix code does not. One eslint follow-up: local/no-crlf-fragile-split statically flags any bare `\n` inside a markdown-fence-shaped regex, regardless of whether the receiver was already normalized — it cannot see the readFileNormalized() data-flow. Kept `\r?\n` in extractCwdGuardBash's fence regex (redundant but harmless on pre-normalized input) rather than fight the rule. Scope note: this diff is broader than issue #2650's own change (plan- phase.md stall detection) because the Windows lane surfaced a genuine repo-wide defect class while verifying that fix, and the maintainer authorized fixing it here rather than filing it separately and shipping a known-broken pattern. Runtime impact: none — this is a test-harness-only defect. The live orchestrator (Claude Code or another runtime) does not do a byte-exact extract-and-pipe of .md content into a shell the way these tests do; it reads the instructions and generates its own bash invocation text, which does not reproduce a raw CRLF pass-through the same way. Not touched: tests/plan-review-convergence.test.cjs's separate, tracked spawnSync ETIMEDOUT flake under bench load (#3005, reproduced on unmodified next) — unrelated load-sensitivity, not a CRLF symptom. * fix(#2650): remove stale drift-ack fragment — plan-phase.md is self-explaining tests/emitted-drift-acks/2650-plan-phase-stall-detection.json acknowledged plan-phase.md's own emitted-path hash move, but plan-phase.md is directly edited in this diff. Per the emitted-attribution law (ADR-2719, tests/emitted-attribution.test.cjs), a workflow's emitted key equals its own source path (gsd-core-verbatim identity rule), so a direct edit to the source is self-explaining and auto-attributed — no ack was ever needed. Verified via the pre-merge lint (scripts/lint-emitted-drift-ack.cjs, run through npm run lint:ci with a fully cleared eslint cache): it passes clean with the fragment removed, confirming no contradiction between the lint and the runtime attribution gate — this was simply an unnecessary fragment. * fix(#2650): restore plan-phase.md drift-ack — size ratchet demands it against next tests/emitted-drift-acks/2650-plan-phase-stall-detection.json was deleted in the previous commit because, against an earlier verification base, it was inert: it explained a moved emitted hash that a direct edit to plan-phase.md already self-attributes. Against origin/next@f1af47766a the demand is different: plan-phase.md is 13 bytes larger than the base copy, which trips the emitted-attribution size ratchet — a job this same ack also performs. Recreated in the documented shape, keyed on the bare filename plan-phase.md (not the full path, and not restating the byte delta per review guidance), describing the actual change: the {outputFile} binding fix for the dead PLANNER_OUTPUT_FILE/CHECKER_OUTPUT_FILE variables and the 5 restored ORCHESTRATOR RULE labels required by #913, both at the stall-watch spawn sites, with explanatory bodies living in the lazily-loaded gsd-core/workflows/plan-phase/steps/stall-detection-helpers.md reference. Confirmed no other fragment (on this branch or on next) claims the bare key "plan-phase.md" before recreating — scripts/lint-emitted-drift-ack.cjs's duplicate check is an exact string match, and the only other mention of plan-phase.md in tests/emitted-drift-acks/ (2658-trae-instruction-file-path.json) uses the full path as its key, so there is no collision. * fix(#2650): real cause of Windows CI failure — bash -c argv-transport, not CRLF The CRLF diagnosis for PR #3015's Windows failure was wrong. Proven wrong, not assumed: .gitattributes' blanket `* text=auto eol=lf` means a Windows checkout never receives CRLF for stall-detection-helpers.md, and the extracted fence's line 64 is byte-identical and correctly balanced on every platform. The real cause: runShouldRecover() passed a 70+ line, quote-dense script as ONE argv element to `spawnSync('bash', ['-c', script, arg0, ...])` PLUS four more positional args. Windows has no execve — Node serializes that whole argv into a single CreateProcess command-line string, and Git Bash's MSYS layer re-splits and unescapes it with its own rules. The boundary between the script and the trailing args was not stable across that round trip (live evidence: one failure's stderr was prefixed `gsd_stall_should_recover_test:` — arg0 arrived — another `/usr/bin/bash:` — arg0 did not). Fixed by writing the script to a temp file and running `bash <file> <args>` instead — the four values are now normal, quote-free positional args, and the script itself never enters argv transport at all. Mirrors tests/quick-branching.test.cjs's extractStep25Bash/runStep, which already uses this exact shape and is green on Windows on `next`. tests/worktree-cleanup.test.cjs's extractCwdGuardBash/runGuard stays on `bash -c` but never appends extra positional args beyond the script itself, so it never hits the same boundary — checked both siblings per review, not assumed. Corrected the now-actively-misleading CRLF comment in extractStallHelpersBash(), and corrected the changeset's claim that the repo-wide CRLF-normalization fix (folded into this branch, maintainer- authorized) explains this PR's own Windows failure — it doesn't, though it remains defensible on its own merits as general test-portability hardening. Separately, while auditing the shipped (non-test) gsd_stall_watch for Windows portability per review request, found and fixed a second, real user-facing defect: the artifact-freshness check used GNU find's `-newermt "@<epoch>"` shorthand, which the BSD find(1) actually shipped on macOS does NOT understand ("Can't parse date/time: @<epoch>", verified live against /usr/bin/find on both a stale and a genuinely fresh file). With the adjacent `2>/dev/null`, that failed silently and permanently degraded artifact_fresh to false on every macOS run — a plan-checker or planner actively writing plan files could still be reported "stalled." Replaced with `find $glob -mmin -N` ("modified less than N minutes ago"), which needs no date-string parsing and is supported identically by GNU find and BSD find; verified live that the old shape fails and the new shape passes against the same real fresh file. Added a real-execution regression test (gsd_stall_watch with `sleep` stubbed to a no-op so the test doesn't actually wait, but the real `find ... -mmin` line still runs) proving the fix, replacing the prior "not integration-tested" note for that path. Note: the remote gsd-test runner is Linux-only, so it cannot itself confirm the Windows fix — only the actual windows-latest CI lane can. * fix(#2650): route the third bash -c call site through the same temp-file seam runWatch() and a `-mmin` regression test still passed their script via `bash -c <script>` after the previous commit only converted runShouldRecover() — live Windows CI on 4b86cc57f confirmed the mechanism: failures went 11 -> 4, and `full test (windows-latest, 22, shard 1/3)` and `shard 2/3` flipped from fail to pass, but the remaining 4 failures (all in this file, all still `bash: -c:`) were exactly the gsd_stall_watch describe block, which runWatch() serves. runWatch() passes NO extra positional args at all, so this also rules out the trailing-args theory from the prior commit: the ~73-line, quote-dense script itself is what does not survive Windows argv serialization when passed as a single `-c` element, regardless of how many (if any) further argv elements follow it. Extracted one shared runBashScript(script, args, opts) helper — write to a fs.mkdtempSync'd file, run `bash <file> [args...]`, clean up in `finally` — and routed all three bash-invoking call sites in this file through it (runShouldRecover, runWatch, and the -mmin freshness test that builds its own script inline for the `sleep` stub). One transport seam means a fourth call site in this file cannot silently reintroduce the bug in isolation, which is exactly what happened here with a second call site. Corrected extractStallHelpersBash()'s doc comment a second time to state the mechanism precisely (script content, not argv-element count) and cite the live evidence (11->4 failures, shards 1 and 2 flipping green) so the next reader does not have to rediscover it. Audited every other bash-invoking call site in files this branch touches, per review request: - tests/code-review-pipeline-regression.test.cjs (runPostProcessing), tests/graphify-visualization.test.cjs (runBlock), and tests/drift-detection.test.cjs (two execFileSync('bash', ['-c', ...]) sites, one of them carrying the same giant runtime-launcher preamble text) — all pre-existing, UNCHANGED by this branch (only touched for the readFileNormalized() CRLF swap), and already exercised on `next`'s last six Windows CI runs per the reviewer's own citation. Left as-is: no evidence of failure, and converting untested pre-existing code outside #2650's scope on an unverifiable guess would be its own risk. - tests/git-base-branch.test.cjs (runHandleBranchingStep) and tests/quick-branching.test.cjs (runStep) already use the same temp-file pattern. No action needed. - tests/runtime-launcher-parity.test.cjs (runResolver) uses `bash -c` but is explicitly `if (process.platform === 'win32') return '';` guarded off on Windows entirely, for an unrelated extension-less-PATH-stub reason — never reaches Windows argv transport at all. No action needed. - tests/worktree-cleanup.test.cjs (runGuard) confirmed by the reviewer as correct and verified; not touched, per instruction. Do not touch: the -mmin fix, the drift-ack fragment, the changeset — all three confirmed correct in prior rounds and left untouched here. Note: the remote gsd-test runner is Linux-only and cannot confirm this; only the windows-latest lanes on #3015 can. * fix(#2650): give runBashScript a default timeout runShouldRecover() was the only one of the three call sites through runBashScript() with no timeout — runWatch() and the -mmin test both pass timeout: 10000 explicitly. Not a regression (this path never had a bound before), but CONTEXT.md's unbounded-subprocess guidance applies directly, and runShouldRecover() is driven repeatedly by a fast-check property test: one pathological input that fails to terminate would hang CI indefinitely instead of failing. timeout: 10000 is now the helper's own default, with ...opts spread after it so the two existing explicit timeout: 10000 call sites are unchanged and any future caller inherits a bound automatically. * fix(#2650): build the -mmin freshness test's glob with forward slashes Windows CI on d6ddda6ea reported the last failure: the -mmin regression test expected 'active' but got 'waiting' — find matched nothing, the same silent-degradation shape as the macOS -newermt defect, but this time in the test's own fixture rather than the shipped bash. Traced what production actually passes: every gsd_stall_watch call site in plan-phase.md builds artifact_glob as `"${PHASE_DIR}"'/*-PLAN.md'` — PHASE_DIR is a POSIX-style .planning/phases/NN-slug value, and the whole thing runs under Git Bash regardless of host OS, so production's glob is always forward-slash. The test instead built it with `path.join(tmp, '*-PLAN.md')`, which on Windows yields a backslash path (C:\Users\RUNNER~1\...\*-PLAN.md). In bash pathname expansion a backslash escapes the next character, so that pattern can never match a real path — find silently returns empty under the existing 2>/dev/null, same shape as the macOS bug. Confirmed as a test artifact, not a production defect: production never constructs the glob this way, so no Windows user is affected. Fixed by forward-slashing the tmp dir before appending the glob suffix, matching production's own convention, with a comment recording why (so a future "simplify this back to path.join" edit doesn't silently reintroduce the failure). The shipped bash's unquoted $artifact_glob is untouched — quoting it would break the multi-file glob expansion it exists for. Note: the remote runner is Linux-only and already passed clean at d6ddda6ea (0/29,603, both node lanes); only the windows-latest lanes on #3015 can confirm this fix. * fix(#2650): forward-slash the three remaining runWatch globs (vacuous-pass CR) The :353 fix (833c11da9) only converted the -mmin freshness test's glob. Three sibling tests in the same describe block still built theirs with path.join(tmp, '*-PLAN.md'), which yields a backslash path on Windows. Two of those three were silently passing for the wrong reason: the '-> stalled' and '-> waiting' tests both expect the glob to match nothing, and on Windows a backslash path matches nothing regardless of whether the directory is actually empty (bash eats each backslash as an escape before the pattern is even evaluated). They would have passed identically with glob expansion completely broken, which is a vacuous pass — not exercising what they claim to. The third ('-> marker_received') is outcome-independent of the glob, so it was merely inconsistent rather than wrong. Converted all three to the same `${tmp.replace(/\\/g, '/')}/*-PLAN.md` construction already used at the -mmin test, so every glob in the file now matches production's own forward-slash `"${PHASE_DIR}"'/*-PLAN.md'` shape, and the two negative tests are meaningful on Windows instead of accidentally correct. Reworded the trailing comment on the 'stalled' test's glob line: it now describes the fixture (the tmp dir contains no *-PLAN.md files) rather than the pattern, since "matches nothing" read as a property of the glob syntax when it's a property of what's on disk. No assertion, the sleep stub, runBashScript, or the shipped bash changed. Smoke-tested all three updated tests manually before committing (not via node --test): marker_received / stalled / waiting, all correct. * fix(#2650): fix own regression tests for #2993's plan-phase.md relocation 531101843's merge with origin/next brought in #2993 (unrelated, epic #1671 Phase 6.2), which extracted plan-phase.md's whole "Chunked Planning Mode" section into gsd-core/workflows/plan-phase/steps/chunked-planning-mode.md, leaving a <!-- gsd:section --> pointer behind. tests/plan-phase-drift-guard. test.cjs (#913) was already updated to read the combined surface (host file + every steps/*.md) so its label count didn't go blind — my own #2650 regression tests were not, and searched plan-phase.md alone for the two chunked spawn sites' headings, which no longer exist there. Two tests failed outright (indexOf returning -1); a third ("standard planner spawn") was silently weakened to an unbounded slice-to-EOF by the same relocation, since its own end-boundary heading also moved — passing by accident rather than by testing what it claimed. Promoted the drift guard's local readPlanPhaseCombined() to a shared, exported tests/helpers.cjs readWorkflowCombined(workflowPath) (host file + sorted steps/*.md, CRLF-normalized at the read boundary) so a second, divergent implementation is never written — the drift guard now delegates to it via a same-named local wrapper, unchanged at every existing call site. Fixed the three affected tests in tests/fix-2650-plan-phase-stall-detection. test.cjs: - "standard planner spawn (step 8)": end boundary changed from the now-gone "## 8.5. Chunked Planning Mode" heading to "## 9. Handle Planner Return", which still exists in plan-phase.md. - "chunked outline spawn (8.5.1)" / "chunked per-plan spawn (8.5.2)": now read gsd-core/workflows/plan-phase/steps/chunked-planning-mode.md directly (not the generic multi-file combined blob, whose file-sort ordering would put unrelated step files between 8.5.2's slice and any downstream anchor) — the same heading-to-heading slicing as before still works because the file is small and self-contained. - Extended the "no unbound $PLANNER_OUTPUT_FILE/$CHECKER_OUTPUT_FILE" check to also scan chunked-planning-mode.md, since two of the five spawn sites now live there. - Added a new count-based test asserting exactly 5 (not "at least one") `gsd_stall_watch "$TS" "{outputFile}"` invocations across the combined surface, mirroring #913's own label-count guard, so every one of the five spawns stays provably bounded and a future relocation can't silently drop one without a test noticing. Also added a small positive test that plan-phase.md's <!-- gsd:section --> pointer to chunked-planning-mode.md exists (#2993 is unrelated to #2650 but its presence is now load-bearing for where 2 of the 5 spawn sites live). Audited every other test file in the repo for a stale reference to content #2993 relocated (searched for the moved headings/prose and for "chunked-planning-mode"/"CHUNKED_MODE" across all *.test.cjs): only this file and the drift guard needed changes. tests/issue-2762-plan-reviews-chunked.test.cjs already reads chunked-planning-mode.md directly (brought in correct by the same merge). gen-section-manifest.test.cjs, init.test.cjs, and workflow-fragments.test.cjs reference "chunked-planning-mode" only as a manifest/section-id fixture value for #2993 itself, not as a stale pointer to relocated content. Did not touch: the ported ORCHESTRATOR RULE lines, run_in_background=true, the glob constructions, runBashScript, the -mmin change, the timeout default, or the drift-ack fragment (confirmed correct against the stale local `next` ref two rounds ago and left alone). --------- Co-authored-by: sim <sim@local>	2026-08-03 10:46:22 -04:00
Tom Boucher	b62589b73f	fix(#2840): exclude runtime from defaults.json spread into project config (#2985) ... * test(#2840): add regression for runtime poisoning from defaults.json * fix(#2840): exclude runtime from defaults.json spread into project config runtime is host-specific (written by whichever installer ran last). On a machine with 2+ runtimes, it poisons every new project config — e.g. a Codex install's runtime:'codex' leaks into Claude Code projects. Now excluded from the userDefaults spread, mirroring the resolve_model_ids guard (#2297). * chore(#2840): add changeset fragment * fix(#2840): add new test file to lint-test-file-count allowlist * chore(#2840): backfill changeset PR number 2985 --------- Co-authored-by: sim <sim@local>	2026-08-01 16:33:43 -04:00
Tom Boucher	8fc244b754	fix(#2702): workstream config-get inherits absent keys from root config (#2833) ... * test(#2702): failing-first regression for workstream config-get root inheritance * fix(#2702): workstream config-get inherits absent keys from root config * fix(#2702): root inheritance wins over --default; gate on GSD_WORKSTREAM not path (review) * test(#2702): make GSD_PROJECT test exit-safe (--default sentinel, no error path) * docs(changeset): #2702 workstream config-get root inheritance * docs(changeset): backfill #2702 PR number to 2833	2026-07-29 14:19:57 -04:00
Tom Boucher	46ba02acde	feat(#2630): phase-estimation module, smart-zone config key, and cli verbs (#2661) ... * feat(#2630): add phase-estimation module, smart-zone config key, and cli verbs * fix(#2630): document smart_zone_tokens, refresh golden fixtures, fix null-proto property assertions * fix(#2630): align smart_zone_tokens write/read validation and harden estimation tests * chore(#2630): backfill changeset pr to 2661	2026-07-26 01:42:47 -04:00
Tom Boucher	9c65a2ea02	fix(#2256): resolve capability-registry configSchema defaults in config-get (#2299) ... cmdConfigGet resolved absent keys through only the 4-key SCHEMA_DEFAULTS map, so the ~42 registry-declared configSchema defaults (including the workflow.security_enforcement security gate, default true) returned 'Key not found' (rc=1) — diverging from the runtime's own resolveConfigKey Level-4 resolver and letting '... || echo false' guards silently read the gate as disabled. Add a resolveSchemaDefault helper that layers SCHEMA_DEFAULTS over the already-imported getCapabilityConfigSchema(cwd) accessor, wired into all three absent-key branches. --default flag precedence, the legacy 4 keys, and 'Key not found' for genuinely unknown keys are preserved. Two pre-existing, security-relevant defects in the same surface, found while writing the regression tests, are fixed inline (no-defer policy): - The --default fallback path never masked secret-named keys, printing e.g. 'config-get brave_search --default <secret>' in plaintext. All six default-emission sites now route through emitResolvedDefault, which applies the same isSecretKey/maskSecret masking the found-key path uses. - Dotted-key traversal used raw bracket access, so 'config-get __proto__' / 'constructor' walked the JS prototype chain and returned internals at rc=0 instead of erroring. Each segment is now own-property-gated. Regression tests folded into tests/config-get-default.test.cjs cover registry defaults (boolean/enum/number, read live from the registry), the no-file/mid-traversal/final-undefined branches, --default and legacy precedence, prototype-pollution keys, secret masking, and the Key-not-found vs No-config-file negative cases. Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>	2026-07-15 11:47:15 -04:00
Cody Anderson	20ff405cb3	feat(#2162): opt-in compact GSD-state format for the statusline (#2175) ... * feat(#2162): opt-in compact GSD-state format for the statusline New statusline.state_format config, enum full|compact (default full — existing rendering untouched). "compact" renders the state segment as "<version> · P<phase>/<total> · <status>", e.g. "v1.12 · P7/12 · executing" — dropping the milestone name and progress bar (the two biggest width costs) and collapsing narrative statuses to a single keyword. Per the #2162 approval conditions, the keyword set is the canonical vocabulary from normalizeStateStatus() in state-document.cjs (discussing/planning/executing/verifying/completed/paused) — no parallel hand-rolled list, so the vocabularies can't drift — and the canonical stuck state "paused" renders uppercase as PAUSED (no new "blocked" lifecycle state). Statuses the normalizer passes through unrecognized fall back to their first word capped at 16 chars. Lifecycle scenes preserved: active_phase wins over the body phase number, milestone completion renders "complete", idle-with-next-action renders "next <action> <phases>". Claude-Session: https://claude.ai/code/session_01Hme55Pvq6BhpgwBcyC5HAg * docs(#2162): changeset fragment for PR #2175 * fix(#2162): review fixes — ENUM_KEYS coverage, cap boundary tests, changeset format - register statusline.state_format in the fix-1628 coercion-bypass matrix - 15/16/17-char boundary tests for the shortGsdStatus fallback cap - changeset body ends with the (#2162) citation per house convention Claude-Session: https://claude.ai/code/session_01Hme55Pvq6BhpgwBcyC5HAg * fix(#2162): round-2 review fixes — scene exclusivity, direct config-set coverage - compact renderer gates the milestone-complete scene behind the absence of an in-flight phase id, mirroring formatGsdState's if/else precedence (Scene 1 beats Scene 3); regression test covers the non-atomic active_phase + percent=100 STATE.md shape - direct config-set accept/reject test for statusline.state_format plain strings (ENUM_KEYS matrix covers only the JSON coercion shapes) Claude-Session: https://claude.ai/code/session_01Hme55Pvq6BhpgwBcyC5HAg * test: regenerate golden-install-parity fixtures for the statusline hook change Claude-Session: https://claude.ai/code/session_01Hme55Pvq6BhpgwBcyC5HAg * fix(#2162): complete-scene gate matches formatGsdState exactly (+property tests) Re-review Major: gating done on !phaseId held completion back for the legacy phaseNum shape — formatGsdState reaches Scene 3 on percent=100 regardless of phaseNum, so compact must too. Gate is now !s.activePhase. The phaseNum-only test now expects 'complete' and cross-checks the full renderer; a parity test feeds identical inputs to both renderers. Re-review Minor: shortGsdStatus gets fast-check property coverage (totality, canonical fixed points, separator safety, fallback shape). Golden fixtures regenerated for the hook byte change. Claude-Session: https://claude.ai/code/session_01Hme55Pvq6BhpgwBcyC5HAg	2026-07-14 21:09:24 -04:00
Cody Anderson	d6672ff926	feat(#2163): opt-in git branch/status segment in the statusline ... New statusline.show_git config (default false). When enabled, a git segment renders after the directory: current branch plus compact work-state markers (+staged ~unstaged ?untracked ↑ahead ↓behind, or ✓ when clean and in sync), e.g. " │ main+2~1?3". One git status --porcelain=v2 --branch spawn per render via execFileSync with a fixed argument array (no shell), a 1.5s timeout, and the workspace dir passed with -C. Fails silently — segment absent outside a repo, without git, or on timeout. Default output is unchanged when the flag is absent. Claude-Session: https://claude.ai/code/session_01Hme55Pvq6BhpgwBcyC5HAg	2026-07-13 11:33:32 -06:00
Cody Anderson	ad7111e50b	feat(#2161): opt-in absolute token count on the statusline context meter (#2174) ... * feat(#2161): opt-in absolute token count on the statusline context meter New statusline.show_context_tokens config (default false). When enabled, the context meter shows the absolute token total after the percentage, e.g. "████░░░░░░ 46% (156k)" — summing input, cache-creation, cache-read, and output tokens from context_window.current_usage (matching /context). Default output is byte-for-byte unchanged when the flag is absent or false. The .planning config is now read once per render and shared with the last-command/position block instead of being re-read. Claude-Session: https://claude.ai/code/session_01Hme55Pvq6BhpgwBcyC5HAg * docs(#2161): changeset fragment for PR #2174 * fix(#2161): review fixes — k-to-M threshold, boundary tests, changeset format - formatTokens promotes to the M branch when k-rounding reaches 1000 (999,500-999,999 rendered "1000k" instead of "1.0M") - boundary tests at 999499/999500/999999/1000000/1000001 - Number() guards on the four usage fields (silent string-concat gap) - changeset body ends with the (#2161) citation per house convention Claude-Session: https://claude.ai/code/session_01Hme55Pvq6BhpgwBcyC5HAg * fix(#2161): round-2 review fixes — config-set coverage, precision claim, exports style - config-set accept/reject tests for statusline.show_context_tokens (mirrors the post-planning-gaps precedent the issue scope names) - changeset + docs no longer claim parity with /context: the suffix sums four fields while the meter %% derives from used_percentage (three), so the figures can diverge slightly - module.exports one entry per line Claude-Session: https://claude.ai/code/session_01Hme55Pvq6BhpgwBcyC5HAg * test: regenerate golden-install-parity fixtures for the statusline hook change Claude-Session: https://claude.ai/code/session_01Hme55Pvq6BhpgwBcyC5HAg --------- Co-authored-by: Tom Boucher <trekkie@nomorestars.com>	2026-07-13 13:25:47 -04:00
Tom Boucher	6addeccd19	feat(ai-integration): API-coverage verify:pre gate (#1562) ... Full API Coverage by Default — Opt Out, Never Opt In. A phase that integrates an external API/SDK/service can no longer seal without a decided coverage matrix. - src/api-coverage.cts: deterministic detector (compound verb+noun signal + <Service> API/SDK surface; stopword-guarded; strips fenced code) + matrix parse/validate/render with field-length caps. - check api-coverage.verify-pre: blocking seal-time gate; phase arg resolved as a token under .planning/phases/ only (traversal-neutralized); validates COVERAGE.md or blocks iff a strong integration signal is detected and no matrix exists; fail-closed when phases tree exists but phase unresolvable. - capabilities/ai-integration: workflow.api_coverage_gate config key (default true), plan:pre contribution, blocking verify:pre gate. Data-driven. - gsd-core/workflows/verify-work.md: generic verify:pre gate dispatch. - Tests: detector FP/FN + matrix validation + fast-check bijection; gate e2e. Code+security review findings fixed (stopword FP, scope containment, pipe/cap rejection, prompt-injection message hygiene). - Regenerated registry/matrix/loop-host-contract/goldens/baseline + docs. Closes #1562	2026-07-07 15:11:12 -04:00
Tom Boucher	dd21bb7451	fix(#2046): config-set <key> null unsets (removes) the key instead of writing "null" ... `gsd-tools config-set <key> null` — the "Clear" action documented in settings-integrations.md / settings-advanced.md — previously fell through the value parser as the literal STRING "null" and persisted it. Consequences: "cleared" keys stayed set (config-get returned truthy "null"), and for secret keys (brave_search/firecrawl/exa_search) a masked success line hid a truthy 4-char value on disk that integrations could pass along as a real credential. There was also no unset/delete verb at all. Fix: parse a bare `null` to JS null and short-circuit to a real UNSET that DELETES the key from config.json — the semantic the docs already describe ("Remove the stored key" / "remove the key by setting it to null"). Deleting (not persisting JSON null) is the correct clear: a persisted null is still a present value consumers must special-case. - src/config.cts: - parse block: `else if (val === 'null') parsedValue = null;` - cmdConfigSet: when parsedValue === null, short-circuit BEFORE the typed per-key validator gauntlet (so clearing an enum/boolean/number key removes it rather than being rejected) and before the project_code special-case; mask the previous value for secret keys in the output. - new `unsetConfigValue()` + `_unsetNestedValue()` mirroring setConfigValue/ _setNestedValue: same prototype-pollution guard, but never creates missing intermediates and never prunes empty parents; returns { previousValue, existed }. Unsetting a never-set key is an idempotent no-op success. - tests/config.test.cjs: new suite covering non-secret routing key, secret key, typed-enum-key bypass (context), idempotent unset, literal-"null"-on-disk guard, the unset-path prototype-pollution guard (alert #26 parity), and a 4-segment deep-nested unset. - tests/review-model-config.test.cjs: update the stale round-trip test that codified the bug (asserted config-set null → config-get returns "null") to the fixed contract — the model key is removed; the review workflow's `[ -n "$VAR" ] && [ "$VAR" != "null" ]` guard handles the empty read as "no override → reviewer default", same as the old "null" sentinel. The 4 documented "Clear" flows (settings-integrations.md, settings-advanced.md) were verified — their prose already describes removal, so the fix makes them accurate rather than aspirational; no doc wording change required. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>	2026-07-07 09:41:14 -04:00
Tom Boucher	77aa85007a	fix(#1581): config-set no longer silently coerces Infinity / project_code (#2023) ... * fix(#1581): config-set no longer silently coerces Infinity/project_code The value parser used !isNaN(Number(val)), which admits Infinity/-Infinity; JSON.stringify then renders those as null on disk while the CLI echoed the non-finite value (output ≠ disk). Leading-zero strings like project_code '007' were also silently number-coerced to 7. - config.cts parser: Number.isFinite instead of !isNaN, so Infinity falls through to the JSON branch (rejected) and stays a string. - project_code: always persisted as a string (identifier; leading zeros matter), bypassing number coercion. - context_window: new per-key validator — must be a finite positive integer (rejects Infinity/0/negatives/non-integers with a non-zero exit). - tests/config.test.cjs: #1581 regression (Infinity rejected, 0 rejected, 200000 accepted finite, project_code '007' string-preserved, granularity numeric coercion unchanged). Closes #1581 * docs(#1581): backfill changeset pr 2023	2026-07-05 14:02:53 -04:00
Tom Boucher	b0d5ca3379	feat(#1517): support custom reviewer instances for /gsd:review (#1766) ... * feat(#1517): support custom reviewer instances for /gsd:review Add a bounded review.reviewer_instances config surface so one model-capable adapter (e.g. opencode) can run as several independent reviewer identities in a single /gsd:review pass. Instances participate only via review.default_reviewers, expand before built-in slugs, are available iff their cli is detected, and a non-matching entry is a hard error (typo must be loud). >=2 same-cli instances emit a shared-adapter caveat in REVIEWS.md. Default path with no instances is byte-for-byte unchanged. Single-source instance->cli resolution lives in resolveReviewerSelection / normalizeReviewerInstances (parity-locked in tests/review-reviewer-instances.test.cjs). cli validated against KNOWN_REVIEWER_SLUGS only (never arbitrary shell); model/agent opaque, never shell-interpolated. Closes #1517 * chore(#1517): backfill changeset pr:1766 --------- Co-authored-by: review-bot <review-bot@gsd>	2026-06-26 23:35:04 -04:00
Tom Boucher	0c4d570541	fix(#1628): type-safe config-set validation — close JSON-coercion enum bypass + enforce capability schema ... Three related defects in cmdConfigSet, all 'config-set stores invalid values silently': 1. Missing guards: workflow.security_block_on (enum) and workflow.security_asvs_level (integer 1-3) had no store-time validation. 2. Systemic JSON-coercion bypass: every string-enum guard used VALID_X.includes(String(parsedValue)). Because the value is JSON-parsed before validation, String(["member"]) === "member" let a JSON array slip through and an array was stored in a scalar key. Reproduced on human_verify_mode, statusline.context_position, context_guard_mode, fallow.scope/profile, source_grounding_authority, drift_action, context. 3. Unvalidated capability keys: 32 capability-registry-owned keys (4 enum, 25 boolean, 2 number, 1 string) had no hardcoded guard, so any value — including coerced arrays/objects and out-of-enum strings like code_review_depth=garbage — was stored silently. Fix: a type-safe assertEnumValue() helper (requires typeof === 'string' before membership), routed through all nine central string-enum guards (messages preserved byte-for-byte); plus a generic capability-registry validation block that validates every capability key against its declared type/values (enum via the registry's values — single source of truth — boolean, number, string). Behavioral regression tests cover every central enum key and representative capability keys (array + object coercion rejected, out-of-enum rejected, valid accepted) with boundary coverage for the security keys. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>	2026-06-23 16:10:34 -04:00
Tom Boucher	4eca5ac96c	feat(#1452): add workflow.context_guard_mode to guard execute-phase against context exhaustion ... Proactive checkpoint guard fires at each wave boundary before spawning agents. Self-assesses context pressure against context-budget.md degradation tiers and warns (warn, default) or auto-invokes /gsd:pause-work (auto) when POOR tier (70%+) is detected. Config key validated; defaults to \"warn\". Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>	2026-06-20 18:10:49 -04:00
Tom Boucher	353f63d170	feat(#1431): runtime capability registry overlay (ADR-1244 Phase 2) (#1440) ... * feat(#1431): runtime capability registry overlay (ADR-1244 Phase 2) Promote the registry from a frozen data file to loadRegistry({includeInstalled}), composing the first-party registry with a validated installed overlay (ADR-1244 D2): - Extract the conformance validator to a shared runtime-callable module (gsd-core/bin/lib/capability-validator.cjs); the generator re-exports it verbatim, guarded by a generative-parity test (no build-time/runtime drift). - capability-loader.cts: loadRegistry({includeInstalled}) composes first-party ∪ validated overlay from $GSD_HOME/.gsd/capabilities (global) and <root>/.gsd/capabilities (project) via the canonical buildRegistry. First-party always wins (id/skill/agent/config/command-family + reserved gsd-/anthropic- prefixes); full merged-set cross-capability validation; engines.gsd load-time re-gate (skip-with-warning); gate-kind capabilities FAIL CLOSED; fragment-path escapes rejected. - semverSatisfies (hand-written, no dep) for the engines.gsd gate, fail-closed. - Wire surface/state + loop to the overlay; loop injects a blocking gate for each skipped gate-kind overlay (fail-closed). - cwd-aware overlay config-key federation: config-loader _federatedConfigSchema(cwd) + config-schema isValidConfigKey(key, cwd) compose the overlay per loadConfig/ config-set call (never eager at module load, never wrong-cwd); first-party path unchanged with no cwd. - run-tests.cjs sandboxes GSD_HOME (idempotent — nested spawns reuse it) for test hermeticity; capability-loader.cjs git+eslint-ignored (tsc artifact); capability-validator.cjs stays linted (#551 migration coverage). Closes #1431 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * docs(#1431): add changeset for runtime capability registry overlay Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * test(#1431): kill config-schema cwd-aware federation mutants (Stryker ≥52) The cwd-aware overlay config-key federation added to config-schema.cts (_capabilityConfigSchema(cwd) + isCapabilityConfigKey/isValidConfigKey cwd threading) introduced mutable surface uncovered by config-schema's mutation test set, dropping its score to 39.58% (below the 52 break threshold). Add a real-overlay-fixture describe block exercising every branch (cwd guard, overlay loadRegistry, found-branch, first-party fallback, cwd threading); local Stryker score 39.58% -> 77.08%. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>	2026-06-18 14:41:20 -04:00
Tom Boucher	ec2ecdf28b	refactor(#1283): T3 — migrate 9 multi-leaf callers off the core spine (batch 2) (#1285) ... Migrate 9 files' entire core surface to the leaf modules directly (behaviour-identical — leaves are the objects core re-exports by reference): config, docs, gap-checker, graphify-command-router (namespace core.output -> io.output), init (17 core symbols -> 8 leaves), profile-output, uat, verification, workstream. All 9 now import zero core symbols and are removed from the allowlist (18 -> 9). Stale core.* docstrings corrected. core.cts re-exports untouched (still serve the remaining 9 files); teardown is T-final. No behaviour change. Closes #1283 Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>	2026-06-15 16:40:48 -04:00
Tom Boucher	bf634b95c3	feat(#1213): Capability State Writer — write-side inverse of the resolver (#1225) ... * feat(#1213): Capability State Writer — write-side inverse of the resolver Adds src/capability-writer.cts (setCapabilityState + cmdCapabilitySet) and the `gsd-tools capability set` subcommand: the write-side inverse of the capability resolver (ADR-1213). One desired capability state projects onto the substrates — `enabled` drives the runtime surface (canonical on/off), `gates` drive federated config keys (hook granularity), install profile is a read-only floor — then re-resolves and reports divergence (assert-and-report), so "off means off" holds as a write-time invariant. Adds batched setConfigValues; routes gsd:settings capability hook-gates through the writer. Docs: CLI-TOOLS reference, how-to, ADR-1213, CONTEXT.md term. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#1213): add changeset for Capability State Writer (#1225) Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>	2026-06-14 12:51:17 -04:00
Tom Boucher	b10e56818b	feat(#1169): complete ADR-857 phase 6 — migrate features to Capabilities, revive dead gates, harden conformance gate (#1183) ... * test(#1168): make phase-6 gate un-gameable — reject empty stubs + require loop shrink The migration assertion previously checked only role==feature, so a registration-only stub (empty hooks, logic left inline) would turn the gate green while phase 6 stayed incomplete — the exact false-completion pattern this gate exists to prevent. Strengthen it: each ADR-named feature must OWN its behavior (>=1 hook, or a command family); and plan-phase.md/execute-phase.md must shrink strictly below their frozen pre-phase-6 sizes (94519/93166 LF bytes), which also defeats double-run gaming (declare a hook but keep the inline block -> file does not shrink -> red). Gate now 5 pass / 4 fail (orphaned execute:wave:post, empty/unregistered features, config-key leaks, no shrink). Green is now reachable only by REAL migration. Refs #1168, #1169. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * feat(#1169): migrate gap-analysis to a Capability (plan:post gate) First real ADR-857 phase-6 migration (pattern-defining tracer). gap-analysis moves from an inline post_planning_gaps branch in plan-phase.md to a real plan:post gate Capability: - capabilities/gap-analysis/capability.json: role:feature, plan:post gate (when=workflow.post_planning_gaps, blocking:false advisory), OWNS workflow.post_planning_gaps (federated out of central schema). - plan-phase.md: inline config-get + gsd_run gap-analysis block replaced with a plan:post render-hooks call site dispatching the gate; file shrinks 94519->93279. - src/check-command-router.cts: cmdGapAnalysisPlanPost runs the real gap analysis via gap-checker. - post_planning_gaps removed from central manifest; resolves via federated config (default true preserved). - tests/post-planning-gaps-2493: re-pointed to assert capability ownership. Verified: gate 5 pass / 4 fail (gap-analysis cleared from migration, plan:post-orphan, config-leak, and plan-phase shrink checks); loadConfig still returns post_planning_gaps=true; check command runs real analysis; 392/392 in the config/registry/federation/router net. Refs #1169. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * feat(#1169): migrate profile-pipeline to a command-family Capability ADR-857 Decision 7: profile-pipeline becomes a command-family Capability (like audit/intel/graphify). capabilities/profile-pipeline/capability.json declares an 8-command family (scan-sessions, extract-messages, profile-sample, write-profile, profile-questionnaire, generate-dev-preferences, generate-claude-profile, generate-claude-md) backed by a new gsd-core/bin/lib/profile-pipeline-command-router.cjs; the inline case arms are removed from gsd-tools.cjs. Owns profile-pipeline.enabled (federated). Verified: registry shows role:feature with commands.length=8; scan-sessions/profile-sample run live via the family; gate cleared profile-pipeline from the empty-stub failure (only tdd/schema-gate/drift remain); 296/296 registry+inventory+gsd-tools tests; lint 0 errors. Refs #1169. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#1167): wire execute:wave:post + implement ui.safety-gate check Revives the second dead gate from #1167: ui.gates@execute:wave:post was declared but never dispatched AND its check.query (ui.safety-gate) was unimplemented. Adds the per-wave execute:wave:post render-hooks call site in execute-phase.md (fires after each wave's merge/cleanup, before the next forks) and implements cmdUiSafetyGate (frontend + UI-SPEC aware, mirrors cmdUiPlanGate) in check-command-router. +17 regression tests. Verified: phase-6 orphaned-points conformance test now PASSES (gate 6 pass / 3 fail); ui-safety-gate routable in dot+hyphen forms; check-ui-safety-gate 17/17, check-ui-plan-gate 18/18; lint 0 errors. Refs #1167, #1168. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * feat(#1169): migrate drift (schema + codebase) to execute:wave:post gates Removes the inline schema_drift_gate + codebase_drift_gate steps (77 lines) from execute-phase.md; drift becomes a Capability with two execute:wave:post gates (verify.schema-drift blocking, verify.codebase-drift advisory) dispatched via the per-wave render-hooks call site. check-command-router routes verify.schema-drift / verify.codebase-drift to the real detectors. Federates workflow.drift_threshold / drift_action / schema_drift_gate out of central. Also fixes the execute:wave:post dispatch prose to run NON-blocking (advisory) gates too — the prior version only ran blocking gates, which would have silently dropped the codebase-drift advisory after its inline step was removed. Behavior preserved. Verified: gate 7 pass / 2 fail (drift cleared from stub + config-leak; execute-phase.md 92297 < 93166 frozen -> shrink passes); both drift checks run real detection; loadConfig defaults preserved (threshold=3, action=warn, gate=true); drift-detection 56/56 + schema-drift 34/34; lint 0 errors. Refs #1169. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * feat(#1169): migrate tdd to a Capability (plan:pre contribution + execute:post gate) tdd becomes a real Capability: a plan:pre contribution injects the <tdd_mode_active> planner guidance (rendered from PLAN_PRE_HOOKS_JSON like security's contribution), and an execute:post gate (tdd.review-checkpoint, advisory) runs the real end-of-phase RED/GREEN review via a new check-command handler. Inline tdd_mode reads + the inline planner block + the tdd_review_checkpoint step are removed; workflow.tdd_mode is federated out of central. The MVP+TDD per-task RED-commit gate is preserved — TDD_MODE is now derived from the execute:post hooks (capId==tdd active), not an inline config-get. BEHAVIOR CHANGE (documented, not silent): the --tdd CLI flag now persists workflow.tdd_mode=true via config-set instead of being per-invocation. Rationale: tdd is now a config-toggled Capability, and env vars do not persist across the workflow's separate bash blocks (config does), so an ephemeral override isn't cleanly achievable; --tdd therefore enables the tdd capability, consistent with how all capabilities are toggled. Verified: gate 7 pass / 2 fail (tdd cleared from stub + config-leak; plan-phase + execute-phase both < frozen sizes); contribution injection + execute:post gate dispatch wired; MVP+TDD gate preserved; tdd.review-checkpoint runs real review; full unit suite 556/0; lint 0 errors. Refs #1169. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * feat(#1169): migrate schema-gate to a plan:pre contribution Capability The plan-time schema-push detection (former plan-phase.md §5.7) becomes a schema-gate Capability: a plan:pre contribution (into:planner, when:workflow.schema_push_detection) whose fragment carries the full ORM-detection + [BLOCKING] schema-push-task injection logic, rendered into the planner via the existing plan:pre render-hooks dispatch. The inline §5.7 block is removed (plan-phase.md 94519->90445). workflow.schema_push_detection is a new capability-owned (federated) key, default true. (The execute-side schema-drift gate was migrated separately into the drift capability.) Verified: registry inlines the fragment (len 2704) so it is actually delivered at plan:pre; gate 8 pass / 1 fail — all 5 ADR-named features now real Capabilities, only the config-leak test remains (intel/security, next unit). Refs #1169. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * feat(#1169): close the 3 capability config-key leaks — phase-6 gate now GREEN Removes the last inline config-get reads of capability-owned keys from plan-phase.md. security_asvs_level/security_block_on now flow through the security plan:pre contribution via a new loop-resolver configValues mechanism (resolves declared config keys with the same 4-level precedence as activation and attaches them to the rendered hook); the §5.55 banner reads them from PLAN_PRE_HOOKS_JSON. intel.enabled becomes a real intel plan:pre step (ref.command: intel api-surface) dispatched via render-hooks; the inline intel branch is gone. gen-capability-registry now validates ref.command as a third dispatch shape. Verified: phase-6 capstone conformance gate is FULLY GREEN (9/0); 3 leaks gone (grep=0); security configValues resolve to {2,medium}/default {1,high}; intel step present only when enabled; loop-render-hooks 62/0, capability-registry 287/0, capability-state/federated-config 113/0; lint 0 errors. Closes the migration half of #1169. Refs #1139, #1167, #1168. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#1169): address adversarial review — restore schema-drift block, generic planner injection, uniform gate contract Adversarial review caught 2 real regressions the green gate missed: (1) schema-drift no longer blocked — the execute:wave:post dispatch read GATE_RESULT.block but verify.schema-drift emitted drift_detected/blocking, and onError:skip wrongly bypassed positive blocks; (2) only tdd's plan:pre contribution was injected into the planner, dropping schema-gate's schema-push detection and security's threat-model guidance. Fixes: (A) every gate check returns a uniform boolean 'block' under --raw (the dispatch form), with advisory gates (tdd/gap) carrying their report in 'message'; (B) gate-dispatch contract corrected at all sites — onError governs command errors only, a blocking gate's positive block always halts; (C) generic planner injection of all plan:pre contributions where into=='planner' (tdd + schema-gate + security incl configValues); (D) two new conformance assertions: planner contributions injected generically + every gate check.query returns boolean block under --raw. Verified: gate 11/11; all 6 gate checks return boolean block under --raw; full suite 595/0; lint 0 errors. Refs #1167, #1168, #1169. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#1169): restore MVP+TDD end-of-phase blocking escalation (2nd adversarial pass) The migrated tdd execute:post gate is statically blocking:false, but the contract (references/execute-mvp-tdd.md + CONTEXT.md) requires the end-of-phase TDD review to ESCALATE from advisory to blocking when MVP_MODE && TDD_MODE && a TDD plan misses a RED/GREEN commit. The migration prose had downgraded this to a 'strong advisory recommendation' — silent loss of the blocking escalation. Restore it: the tdd-gate dispatch now refuses to mark the phase complete (Phase blocked message) under MVP+TDD when GATE_RESULT.block is true; advisory otherwise. Also strengthen tests/execute-mvp-tdd-gate.test.cjs: hasBlockingEscalation previously matched any line with 'blocking'+'mvp+tdd' (so 'advisory (blocking: false) ... under MVP+TDD' was a false green); now it requires the real refusal semantics ('refuse to mark the phase complete' / 'phase blocked'). Caught by 2nd adversarial review pass. Verified: execute-phase.md 92702 < 93166 frozen; mvp-tdd-gate + phase-6 gate 19/0; full suite green; lint 0 errors. Refs #1169. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#1169): restore MVP+TDD proceed-block, codebase auto-remap, schema skip-flag (3rd adversarial pass) 3rd adversarial pass found 4 more silent regressions: (1) the tdd MVP+TDD 'refuse to mark complete' was nullified by a downstream 'ALWAYS proceed regardless of gate results' line — proceed is now conditional (stops on an active MVP+TDD block); (2) the test now asserts the proceed is NOT an unconditional override; (3) codebase-drift auto-remap (spawn gsd-codebase-mapper when drift_action=auto-remap) was dropped — the execute:wave:post advisory dispatch now consumes spawn_mapper/directive; (4) GSD_SKIP_SCHEMA_CHECK bypass was lost from the gate path — cmdVerifySchemaDrift now honors the env var (block:false when set). Verified: no unconditional proceed; GSD_SKIP_SCHEMA_CHECK=true -> block:false; gate 11/11 + mvp-tdd 9/9; full suite 569/0; lint 0; execute-phase.md 93109 < 93166. Refs #1169. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#1169): init.cts reads federated config keys from nested path (4th adversarial pass) Config federation moved tdd_mode/research/nyquist_validation from flat config.<key> to nested config.workflow.<key>, but src/init.cts still read them flat — so init.plan-phase/init.execute-phase emitted tdd_mode:false / research_enabled:undefined / nyquist:undefined regardless of config (a public command-contract regression; the migrated loops use render-hooks so enforcement was unaffected). Read via config.workflow (type-safe Record cast). Now init reflects the same resolved values + federated defaults (research/nyquist default true) as the render-hooks path. Verified: build clean; init.plan-phase emits tdd_mode:true/research:false/nyquist:false for set config, defaults true for empty; full suite 591/0; lint 0. Refs #1169. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * docs(#1169): add changeset for ADR-857 phase-6 completion (PR #1183) Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#1169): complete phase-6 migration fallout — restore TEXT_MODE, fix registry .claude leak, re-point stale workflow-contract tests The capability migration left real regressions and stale consumer tests that the per-module unit suite missed but the full cross-platform suite caught (27 failing tests): Real source regressions (fixed): - execute-phase.md lost its AskUserQuestion TEXT_MODE plain-text fallback when the inline schema_drift_gate step was removed — non-Claude runtimes would stall. Restored, and the execute:post gate-dispatch prose de-duplicated to cite the execute:wave:post contract (loop body shrinks below the frozen pre-phase-6 ceiling while keeping every onError/blocking nuance). - capabilities/tdd inline fragment hardcoded `@~/.claude/gsd-core/references/tdd.md`, baked verbatim into the committed capability-registry.cjs and leaked the install path on 11 non-Claude runtimes (registry .cjs is copied, not path-converted). Made the fragment path-free; regenerated the registry. The phase-6 conformance gate now guards this (no ~/.claude install path in any capability source or the generated registry). - plan-phase.md: removed a §5.7 stub re-added in error and routed Branch 2 to step 6 (schema-gate is a plan:pre capability, §5.7 is gone). Stale workflow-contract tests re-pointed to the capability dispatch they now must assert (behavior verified preserved in source first, assertions kept equal-or-stronger): bug-621 + bug-2851 (gap-analysis via gsd_run render-hooks plan:post + registry binding), feat-2527 (tdd_mode federated out of central), phase6-planning + plan-phase-ui-redirect (§5.6 bounded by ## 6.), plan-phase-drift-guard (intel when:intel.enabled skip branch). profile-pipeline-command-router.cjs un-ignored from eslint (hand-written, no TS source) + stale disable comments removed. Size baseline regenerated. Verified: full suite 15140 tests / 0 fail; lint 0 errors; conformance gate green legitimately. Refs #1139, #1167, #1168, #1169. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * test(#1169): add ADR-857 E2E content-test coverage for the 12 loop points + capability deliverables Grounds the capability engine in behavioral E2E tests (drive the real render-hooks/check CLI + the real registry, assert typed result content — no source-grep), structured around what ADR-857 says to deliver. 207 tests; each genuineness-checked (flip the expectation, confirm it fails). Per-loop-point dispatch (7 files): empty-point negative-space across the 6 no-hook points; verify:post 3-step resolution+ordering+onError; plan:pre contribution/configValues + ui.plan-gate + intel; plan:post gap-analysis; execute:wave:post drift+ui gates via the check route (schema-drift block/skip, codebase-drift threshold BVA, auto-remap); execute:post tdd.review-checkpoint RED/GREEN; ship:pre security gate resolution + frontmatter-get predicate pieces. ADR-deliverable coverage (4 files): predicate boundary held (edge/prohibition probes stay core, not off-by-default Feature Capabilities — phase-6 exception); core loop runs with zero capabilities (all 12 points empty, init bundles resolve); contribution merge (multiple ordered <contribution from=> blocks); federated-config key removal on uninstall. federated-config allowlisted for its 3-file split (unit + integration + lifecycle). Refs #1139, #1167, #1168, #1169. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#1169): remove dead drifted converter dups + address adversarial review Lint cleanup (root-caused, not waved off): src/runtime-artifact-conversion.cts carried 11 agent-converter functions (+5 orphaned consts/helpers) that were never exported, never called, and had silently DRIFTED from the live hand-authored copies in bin/install.js (one even referenced an undefined `claudeToCopilotTools`). Deleted the dead duplicates; install.js's live copies are untouched (it never imported these). Lint now 0 errors / 0 warnings. Adversarial-review (Codex) findings fixed: - HIGH: execute-phase.md TDD_MODE used `jq ... || echo false`, silently disabling the MVP+TDD blocking gate on jq-less runtimes. Reverted to the `node -e` form (node is guaranteed; matches the file's other node-e usages) so a missing optional tool can no longer fail-open a blocking safety path. - MEDIUM: federated-config-key-removal orphan-key test was vacuous (it skipped the orphan assertion). Now asserts the removed capability's key is genuinely not surfaced/validated after uninstall. - LOW: phase-6 conformance leak regex broadened to catch absolute-home and Windows-backslash `.claude/(gsd-core|commands|agents|hooks)` paths, not only `~`/`$HOME` forward-slash forms. - LOW: bug-2851 plan:post dispatch assertion now requires `--raw` (matched its stated contract). - nit: plan-pre intel-step test duplicate assertion replaced with a distinct structured-output check. Size baseline regenerated (execute-phase.md 93089 < 93166 frozen). Refs #1167, #1169. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * test(#1169): make runtime-homes-descriptor-drive titles environment-independent The descriptor-equivalence test embedded the absolute golden config path (`os.homedir()`-derived) directly in each `test(...)` title, so titles differed between macOS (`/Users/x/.claude`) and Docker (`/home/gsdtest/.claude`). Every test PASSES on both platforms (15885/0 leaf tests each), but gsd-test-summary compares results by title and reported 29+29 false "only in Mac / only in Docker" discrepancies for tests that actually pass everywhere. Move the golden path out of the title and into the assertion message (still shown on failure); titles are now byte-identical across platforms so the cross-platform comparator matches them. No assertion logic or golden values changed. Refs #1169. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#1169): derive TDD_MODE via gsd_run --active-cap, not node -e (fix prompt-injection CI gate) The prior fix reverted execute-phase.md:181 from jq to `node -e` to close a Codex HIGH (jq||echo-false silently disabling the MVP+TDD blocking gate on jq-less runtimes) — but the CI prompt-injection scanner BLOCKS new `node -e` in workflow markdown (inline code-exec = injection vector), turning the security gate red. Both forms were wrong: node -e fails the scanner; jq fail-opens a blocking safety gate; `config-get workflow.tdd_mode` is forbidden by the conformance leak gate (tdd_mode is capability-owned). Correct fix (what Codex recommended): a gsd_run-native boolean. Add an `--active-cap <capId>` flag to `loop render-hooks <point>` that resolves hooks the normal way and prints exactly `true`/`false` for whether a capId is active — scanner-safe (canonical launcher, no inline code), node-reliable (no optional jq to fail-open), and leak-free (render-hooks resolution, not config-get). execute-phase.md:181 now `TDD_MODE=$(gsd_run loop render-hooks execute:post --active-cap tdd)`. +5 behavioral tests for the flag. Verified: prompt-injection-scan --diff origin/next → 0 findings; conformance gate 13/13 (execute-phase.md 92934 < 93166); execute-mvp-tdd + tdd-mode + loop-render-hooks 87/0; lint 0/0. Refs #1167, #1169. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>	2026-06-13 21:07:55 -04:00
Tom Boucher	827011b865	fix(#1098): guard generate-claude-md against clobbering hand-crafted files; redirect default to .claude/CLAUDE.md (#1118) ... /gsd-new-project wrote a repo-root CLAUDE.md full of broad project docs, overwriting/diluting a hand-crafted instruction file. --force was parsed but silently dropped, and nothing guarded an existing non-GSD file. - Guard: an existing instruction file with no `<!-- GSD:<section>-start` markers (hand-crafted) is left untouched; report action:"skipped". --force (now wired through CmdGenerateClaudeMdOptions) overwrites intentionally. The marker check uses /<!-- GSD:[a-z]+-start/ so a file merely documenting GSD syntax is safe. - Redirect: the Claude-family default output is now ./.claude/CLAUDE.md (a valid auto-loaded project-memory location) instead of repo-root ./CLAUDE.md. Aligned across the handler default, config-defaults.manifest.json, buildNewProjectConfig, the config template, new-project.md, and cmdGenerateClaudeProfile; advisory read-CLAUDE.md hints in plan-phase/quick/profile-user updated. Codex still writes AGENTS.md. Closes #1098 Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>	2026-06-12 16:03:51 -04:00
Tom Boucher	612e3e60e8	fix(#751): recognise config-set prototype-pollution guard in CodeQL + test dynamic-key vectors (#752) ... CodeQL alert #26 (js/prototype-pollution-utility) kept firing on setConfigValue because its dataflow does not trace the #663 Set-based, pre-loop keys.some(...) forbidden-key check as a sanitising barrier on the write site. - src/config.cts: replace the Set + pre-loop check with inline literal comparisons (key === '__proto__' || 'prototype' || 'constructor') on the exact key used to index `current`, immediately before each write (intermediate keys in the descent loop, plus the final key). Same forbidden set, same error message and ERROR_REASON.CONFIG_PARSE_FAILED — behaviour unchanged from #663, but the barrier is now CodeQL-recognised. - tests/config.test.cjs: add regression tests for schema-valid dynamic-prefix keys (agent_skills.__proto__, agent_skills.constructor, agent_skills.prototype, features.__proto__, review.models.constructor) that pass the isValidConfigKey schema gate and reach the guard. Each asserts the guard's own message fires (not the schema gate's "Unknown config key") and Object.prototype is not polluted. The prior #663 tests never reached the guard — their keys are rejected by the schema gate first — so the guard's real attack surface was untested. Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>	2026-06-07 00:18:00 -04:00
Tom Boucher	ba231ecbfc	chore: clean up clear-cut ESLint warnings (#732) (#734) ... Pay down pre-existing error→warn lint debt. Removes dead imports/vars, unused functions, redundant regex/string escapes, and stale eslint-disable directives; converts unused `catch (_e)` to optional catch binding (src/*.cts). No behavior change. Lint 345→125 warnings (0 errors); deferred categories (n/no-process-exit, test-sleeps, control-regex) tracked in #732 for follow-up. Full test suite green (0 failures); code-review verified all removals unused and all escape fixes semantics-preserving. Closes #732 Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>	2026-06-06 11:24:48 -04:00
Tom Boucher	11afca2968	feat(#656): Research module — content-addressed cache + provider seam + registry-API legitimacy (#664) ... * feat(#656): add Research Store module (content-addressed cache, TTL staleness) Content-addressed research cache behind a clock seam: researchKey (sha256, deterministic), putResearch/getResearch ({hit,stale}, never throws), ttlForSource (curated HIGH 30d / MED 7d / web LOW 1d), two-tier resolveStorePath (curated -> ~/.gsd/research-cache, web/synthesis -> project .planning/research/.cache). 28 behavioral + property tests; boundary coverage at ttl-1/ttl/ttl+1. Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(#656): add Research Provider module (waterfall + confidence + plan) Single source of truth for the Balanced provider waterfall (docs Context7->Ref->Jina, web Exa+Tavily, fallback Perplexity/Brave, Firecrawl scrape-only). classifyConfidence stamps HIGH|MEDIUM|LOW by provider (never throws). providerAvailability maps config flags to usable providers. planResearch checks the Research Store (injected seam) and returns cache-hits + a per-question fetch plan, falling through the waterfall to the always-available websearch terminal. 22 behavioral + property tests. Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(#656): add Package Legitimacy module (registry-API verdicts, slopcheck optional) Replaces the pip-install-or-degrade slopcheck prose gate with code: classifyPackage (pure, never throws) computes OK|SUS|SLOP from tunable thresholds (minAgeDays 30, minWeeklyDownloads 1000, requireRepo). checkPackages queries injectable npm/PyPI/crates registry adapters (real https with 5s timeout, degraded-not-thrown on failure); slopcheck is one optional adapter that can only escalate severity, never degrade to [ASSUMED]. 34 behavioral + property tests; boundary coverage on age and downloads (limit-1/limit/limit+1). Known follow-up: real npm adapter must add api.npmjs.org last-week downloads fetch (currently null -> unknown-downloads). Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(#656): detect Tavily/Ref/Perplexity/Jina provider keys; complete npm downloads adapter config: add tavily_search/ref_search/perplexity/jina availability flags (env var or ~/.gsd/<x>_api_key), mirroring brave_search/exa_search/firecrawl, so the Research Provider waterfall can gate them. package-legitimacy: real npm adapter now fetches api.npmjs.org last-week downloads (bounded, degraded-not-thrown) so weeklyDownloads is populated. +12 config tests; 34 legitimacy tests unchanged. Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(#656): expose Research seam via gsd-tools query (research-plan, research-store, package-legitimacy) Routes the L2-hybrid surface so agents reach it as CLI: 'query research-store get/put' (cache, HOME-sandboxable), 'query research-plan --input' (cache-hits + fetch plan from planResearch), 'query package-legitimacy check --ecosystem' (async registry verdicts). Commands skip .planning root resolution and appear in top-level usage. 5 behavioral runGsdTools tests; command-contract unchanged (335). Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * docs(#656): document Research module (CONTEXT predicates, ADR-0656, architecture, changeset) Adds GSD-RESEARCH.* + DEFECT.RESEARCH-PROVIDER-PROSE-DRIFT predicates to CONTEXT.md, ADR-0656 recording the L2-hybrid seam decision, a docs/ARCHITECTURE.md Research Module subsection, and an Added changeset fragment (pr:0, backfill on PR). Notes the #657 deferrals (agent collapse + install.js MCP mapping). Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * chore(#656): sync inventory for research modules Regenerate INVENTORY-MANIFEST.json and bump docs/INVENTORY.md CLI Modules count 82->85 with rows for research-store/research-provider/package-legitimacy (DEFECT.INVENTORY-DRIFT). Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * chore(#656): eslint-ignore generated research .cjs artifacts (ADR-457) research-store/research-provider/package-legitimacy .cjs are tsc-generated from src/*.cts, so they belong in the ESLint ignore block (lint the .cts source, not the emitted .cjs). Fixes tests/551-eslint-bin-lib-coverage. Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * chore(#656): backfill changeset pr number to #664 Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * chore(#656): satisfy eslint lint-tests gate Fix 20 eslint errors in the new research files: use helpers.cleanup() instead of raw fs.rmSync() in tests (local/no-raw-rmsync-in-tests, Windows-EBUSY retry budget); drop redundant '| string' union members and unnecessary type assertions; deterministic object normalization in researchKey (no-base-to-string). Logic unchanged; 6180 tests still green. Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(#656): harden package legitimacy per review (W1/W2/I3/I4) W1: httpsGet now reads statusCode; npm/PyPI/crates map 404 -> exists:false -> SLOP (registry-existence is the #1 slopsquatting defense; previously only npm caught it). Transport made injectable (_setHttpGet) for hermetic 404 tests. W2: suspicious-postinstall is now terminal SLOP independent of the optional slopcheck adapter, and the regex drops the bare https?:// arm (over-fired on esbuild/sharp/node-gyp) for shell-exec/download-exec signatures only. I3: checkPackages now threads version to registry.lookup and adapters verify that specific version exists. I4: moreServerVerdict -> moreSevereVerdict. +11 regression tests (all RED-first); 45 total green. Addresses review by @davesienkowski on #664. Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(#656): research-store tier coherence + freshness + version TTL (W4/I1/I2/I4) I1: tier now derives from source (curated -> user ~/.gsd, else -> project .planning), not kind, so put-tier and get-tier can't diverge; kind is a key component only. W4: getResearch searches both tiers and returns the freshest (non-stale preferred), never letting a stale curated entry shadow a fresh web one; blank version caps TTL at 1 day (no 30d on version-blind keys). I2: atomic platformWriteSync instead of raw fs.writeFileSync on the shared global path. I4: dropped the dead ttlForSource arm. CLI get now searches both tiers. +5 RED-first regression tests; 38 green. Addresses review by @davesienkowski on #664. Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(#656): expose classifyConfidence as a CLI route, killing dead code (W3) Adds 'gsd-tools query classify-confidence --provider X [--verified]' so research agents get the confidence tier FROM CODE (provider waterfall + verification lever) instead of asserting it in prose. classifyConfidence previously had no runtime caller. HIGH means 'trusted provider'; --verified raises web results to MEDIUM (verification semantics documented in ADR-0656). +4 behavioral tests. Addresses review by @davesienkowski on #664 (W3). Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(#656): close Codex adversarial-review findings (path-traversal, version-age, malformed-cache) HIGH: research key must be 64-hex sha256 (isValidResearchKey) + resolved-path containment check in put/get + CLI validation -> blocks '../../x' arbitrary-file-write. HIGH: package legitimacy now derives publishedAt from the REQUESTED version (npm time[version], PyPI releases[version] upload_time, crates versions[].created_at) so a new malicious version of an old package can't inherit old age and evade 'too-new'. MEDIUM: getResearch validates entry shape (finite fetched_at + positive ttl + required fields) -> malformed cache entry is a miss, not fresh-forever. +regression tests (RED-first); 111 green. Codex adversarial review (required pre-PR gate). Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(#656): close code-review correctness findings (1) package-legitimacy CLI now rejects unknown --flags instead of silently consuming the following package as a flag value; only --ecosystem takes a value. (2) crates recent_downloads (90-day) normalized to a weekly figure before the minWeeklyDownloads threshold (was ~13x too lenient). (3) research-plan --input validates parsed JSON is an object with an Array questions before destructuring -> clean usage error instead of an uncaught TypeError on null/bad input. (4) research-store put rejects a flag value that is itself a --flag (no more storing '--source' as content). (5) planResearch skips questions whose text is not a non-empty string instead of emitting question:undefined. +13 RED-first regression tests; 143 green. Code-review gate. Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * refactor(#657): extract researcher documentation_lookup to shared @-reference 6 researcher agents carried a near-duplicate <documentation_lookup> block; consolidate into gsd-core/references/research-documentation-lookup.md (@-included). Unifies the ctx7 CLI fallback to the safer 'command -v ctx7' guard (drops silent 'npx --yes ctx7@latest' execution in 5 agents). Behavior-preserving dedup; inventory 63->64 references. Phase A of the agent collapse. Issue #657. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * refactor(#657): extract researcher philosophy + verification-protocol to shared @-references philosophy and the pitfalls+pre-submission-checklist common-core were near-duplicated in project/phase researchers; consolidate into gsd-core/references/research-{philosophy,verification-protocol}.md (@-included). phase-researcher keeps its 3 extra checklist items inline. Pre-submission domains checklist made agent-agnostic so project-researcher doesn't lose features/architecture coverage. Write-contract intentionally left inline (bug-214 tests assert it verbatim). Inventory 64->66 refs. Behavior-preserving. Phase A. Issue #657. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(#657): wire gsd-phase-researcher to the Research seam (Phase B / S1) The phase researcher now CALLS the code seam instead of carrying inline mechanics: provider waterfall -> 'gsd-tools query research-plan' (+ research-store put to cache digests); confidence-tier prose -> 'gsd-tools query classify-confidence'; slopcheck pip-install protocol -> 'gsd-tools query package-legitimacy check'. This makes the Research module a real runtime consumer (validates the seam end-to-end, addresses reviewer S1) and removes the duplicated waterfall/confidence/slopcheck prose. RESEARCH.md output contract, commit step, structured returns, and Phase-A @-includes unchanged. package-legitimacy-gate.test.cjs rewritten prose-grep -> behavioral (asserts the seam invocation). Issue #657. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(#657): wire gsd-project-researcher to the seam + add tavily/ref/jina MCP tools (Phase C.1) project-researcher now calls gsd-tools query research-plan / classify-confidence (+ research-store put) instead of the inline provider waterfall + confidence-tier prose (mirrors the phase-researcher rewire; no package-legitimacy — phase-only). Output contract (STACK/FEATURES/ARCHITECTURE/PITFALLS/SUMMARY.md + sections, no-commit, structured returns, Phase-A @-includes) unchanged. Adds mcp__tavily/ref/jina__* to the project/phase/ui researcher tools frontmatter (Balanced provider set) so install.js MCP mapping (C.2) has a consumer. Issue #657. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * test(#657): cover tavily/ref/jina MCP install handling + frontmatter parity guard (Phase C.2) Investigation: exa/firecrawl have no explicit per-runtime tool-mapping — every mcp__<server>__* except context7 rides the generic passthrough (Copilot lowercases; OpenCode/Cursor/Windsurf/Augment keep as-is; Gemini auto-discovers). tavily/ref/jina are handled identically, no install path broken. Added 12 copilot-install passthrough tests + a mcp-tool-inheritance parity guard (tavily co-declared with exa, jina with firecrawl, ref present across the 3 web researchers) so the MCP set can't drift. No io.github registry ids invented (none sourceable in-repo); documented as a follow-up. 488 tests green. Issue #657. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(#657): profiles as source of truth for researcher agents + drift-guard (Phase C.3) scripts/research-profiles.cjs declares each of the 7 researcher agents' identity + contract (name, description, color, tools, required @-includes, required gsd-tools seam calls, output-contract markers). scripts/gen-research-agents.cjs --check validates every committed agent against its profile; --write regenerates ONLY the frontmatter from profiles (body untouched) and is a verified no-op against the current agents (zero diff = fidelity). tests/research-agent-profiles.test.cjs is the DEFECT.GENERATIVE-FIX drift guard. Design note: profiles govern the generatable/contract surface rather than destructively regenerating the disparate operational prose bodies (those were deduped via @-includes in Phase A). scripts/ is not inventoried (no inventory change). Issue #657. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(#657): complete agent provider-dispatch + parity guard; align legitimacy field; validate profiles Adversarial-review findings: (HIGH) the seam-wired agents' Step-C dispatch only mapped 6 providers, so a planResearch result of jina/ref/perplexity/brave (reachable via the waterfall fallbacks) had no handling -> agent stall; completed both agents' dispatch to all 9 PROVIDER_WATERFALL ids + a catch-all, and added a parity test asserting agent dispatch stays in sync with research-provider PROVIDER_WATERFALL (DEFECT.GENERATIVE-FIX). (MEDIUM) phase-researcher package-legitimacy JSON example used 'package' but the module returns 'name' -> aligned. (LOW) gen-research-agents checkAgent now returns a clear failure for a malformed profile instead of throwing. +parity/validation tests (RED-first). Issue #657. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(#656): make classifyConfidence verification-evidence-driven (W3) Confidence conflated provider authority with claim verification — context7/ref stamped HIGH purely by provider identity, and the only verification lever was a self-set --verified flag. Split into two axes: provider authority (static) + verification evidence (code-computed). HIGH now requires ground-truth corroboration (legitimacyVerdict OK), independent of provider; authority alone caps at MEDIUM; SLOP caps at LOW; the self-reported --verified is demoted to a MEDIUM-only web lever. HIGH = corroborated-against-authoritative-source, not a correctness guarantee. Adds --legitimacy-verdict to the classify-confidence CLI; updates CONTEXT.md predicate + ADR-0656 (tier set unchanged, ADR-consistent). Addresses davesienkowski's W3 review on #664. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#656): bind classify-confidence verdict to code, closing CLI self-grading Adversarial review found the new --legitimacy-verdict flag was caller-supplied, so an agent could self-assert OK->HIGH without any real legitimacy check — reintroducing the exact self-grading hole W3 closes. Remove the free flag; the CLI now computes the verdict via checkPackages only when --package/--ecosystem is given (code-computed, not agent-asserted). Update the stale CLI test (context7 alone -> MEDIUM) and extend the property test to vary legitimacyVerdict. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>	2026-06-05 17:58:48 -04:00
Tom Boucher	b238baddbf	fix(#663): resolve open CodeQL/Dependabot security alerts (ReDoS, prototype pollution, workflow perms, qs DoS) (#665) ... * fix(#663): resolve open CodeQL/Dependabot security alerts - ReDoS: collapse ambiguous nested quantifiers in phase-heading regexes (verify/validate/commands) and the plan-filename lookahead (phase) to provably-equivalent non-backtracking forms - prototype pollution: guard __proto__/constructor/prototype in setConfigValue - remove dead no-op .replace(/-/g,'-') in phase.cts - escape all regex metachars in bug-2839 test - add contents:read permissions to security-scan + install-smoke workflows - pin qs >= 6.15.2 via overrides (DoS GHSA) - broaden prompt-injection allowlist to translated security-model docs Closes #663 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * test(#663): regression tests for prototype-pollution guard and roadmap-phase ReDoS Behavioral test that config-set rejects __proto__/constructor/prototype keys without polluting Object.prototype, plus a ReDoS guard (timing-bound) and behavior-preservation assertions for the collapsed phase-heading regexes. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * test(#663): make ReDoS regression assert structured result, not elapsed time Replace elapsed-time assertions (which tripped local/no-elapsed-assertion ESLint rule and were unsound for synchronous ReDoS) with structured-result assertions on adversarial inputs: assert that malformed phase headings/ unchecked-item lines without a terminating colon/space yield an empty Set, which is both the correct behavior and an exercise of the fixed linear regex on the catastrophic-backtracking input shape. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#663): add Security changeset fragment for #665 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * test(#663): fold prototype-pollution regression into config.test.cjs The standalone bug-663-config-prototype-pollution.test.cjs was a 9th config-module test file, tripping lint-test-file-count (the allowlist is ratcheted and must not grow). Consolidated into config.test.cjs instead. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>	2026-06-04 08:54:15 -04:00
Tom Boucher	df04aae5e4	enhancement(#537): migrate all hand-written bin/lib/*.cjs to TypeScript source of truth (ADR-457) (#602) ... * enhancement(#537): migrate code-review-flags to TS source of truth Collapse the hand-written get-shit-done/bin/lib/code-review-flags.cjs to a TypeScript source of truth (src/code-review-flags.cts), compiled by tsc to a gitignored .cjs build artifact at the same path, per ADR-457 (build-at-publish). Second module after the semver-compare pilot (#541). Behaviour is preserved byte-for-behaviour (characterization test added in tests/code-review-flags.test.cjs locks the parser quirks). Adds compile-time type checking: CodeReviewFlags interface + CodeReviewWorkflow literal union. The require() path is unchanged, so code-review.md and the bug-3727 test keep working. The emitted .cjs is gitignored and eslint-ignored, mirroring the pilot. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate 9 leaf bin/lib modules to TS source of truth ADR-457 build-at-publish, batch 1 (pure leaf modules, 0 sibling-deps): 001-legacy-orphan-files, context-utilization, redaction, artifacts, command-arg-projection, clock, ui-safety-gate, review-reviewer-selection, clusters. Each moves to src/*.cts (strict TS, typed), compiled by tsc to a gitignored .cjs at the same require() path; behaviour preserved byte-for- behaviour. Adds src/node-globals.d.ts (minimal ambient shim; "types":[]). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#537): add @types/node, drop hand-rolled node-globals shim ADR-457 migration infra: replace the temporary src/node-globals.d.ts ambient shim with @types/node@22 + "types":["node"] in tsconfig.build.json. Unblocks migrating the ~49 remaining bin/lib modules that use node:fs/path/os/ child_process. Build + full suite (3030 pass) + lint all green; no .cts type changes were needed (real Node types matched the shim). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate 9 more bin/lib modules to TS (batch 2) ADR-457 build-at-publish. Clean leaves: installer-migration-report, prompt-budget. Type-error-prone leaves (were tsconfig.lint-excluded; now strict-typed and removed from that exclude list): secrets, phase-lifecycle, workstream-name-policy, decisions, validate, schema-detect. Plus runtime-name-policy. Strict type fixes narrow unknown->concrete domain types (no any/ts-ignore); behaviour preserved. Full suite green, lint 0 errors. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate runtime-slash to TS (cross-import proof) ADR-457. First cross-module TS->TS import: src/runtime-slash.cts imports ./runtime-name-policy.cjs and tsc resolves the sibling .cts types under strict (no declaration files; NodeNext .cjs->.cts mapping), emitting a correct require("./runtime-name-policy.cjs"). Confirms the recipe for coupled modules, which must be migrated in dependency order (leaves-up). Suite green, lint clean. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate 10 more bin/lib modules to TS (batch 3) ADR-457 build-at-publish, Wave-1 leaves: event, workstream-inventory-builder, plan-scan, fallow-runner, project-root, installer-migration-authoring, update-context, 000-first-time-baseline, runtime-homes, model-catalog. Strict typing fixed real issues (narrowing unknown, qualified fs/path calls, removed unnecessary casts); plan-scan/project-root/workstream-inventory-builder dropped from tsconfig.lint exclude. Behaviour preserved; suite green, lint 0 errors. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate 5 large Wave-1 leaves to TS (batch 4) ADR-457 build-at-publish: configuration, state-document, shell-command- projection (42 dependents), security, command-aliases. shell-command- projection keeps a namespace child_process import for mock-intercept testability. loadConfig/migrateOnDisk emit synchronously (every caller uses them sync; the one awaited migrateOnDisk caller tolerates a non-Promise) — full suite (3030 pass) confirms behaviour preserved. configuration/ state-document/command-aliases dropped from tsconfig.lint exclude. Also fixes the malformed batch-3 changeset frontmatter (type/pr) that failed lint:docs. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate 6 Wave-2 modules to TS (batch 5) ADR-457 build-at-publish: config-schema, model-profiles, 002-codex-legacy-hooks-json, logger, active-workstream-store, adr-parser. First batch importing already-migrated siblings (configuration, model-catalog, shell-command-projection, redaction, security) via ./sibling.cjs specifiers. Strict type narrowing (typeof guards over String(unknown)); behaviour preserved; suite 3030 pass, lint 0 errors. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate 5 large Wave-2 modules to TS (batch 6) ADR-457 build-at-publish: graphify, install-profiles, intel, installer-migrations, worktree-safety. installer-migrations preserves its dynamic require() loader for numbered migration modules (scoped lint suppressions). Strict typing (typeof guards over String(unknown)); behaviour preserved; suite 3030 pass, lint 0 errors. Wave 2 complete. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate Wave-3 modules to TS (batch 7) ADR-457 build-at-publish: planning-workspace, runtime-artifact-layout, command-routing-hub, drift. Uses `import x = require()` for export= siblings; drift's lazy require of runtime-slash hoisted to a top-level import (verified non-circular). Behaviour preserved; suite 3030 pass, lint 0 errors. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate small Wave-4 modules to TS (batch 8) ADR-457 build-at-publish: cjs-command-router-adapter, phase-command-router, surface, roadmap-upgrade. Typed the hub router handler results as the HubResult discriminated union; surface drops 4 genuinely-unused imports. Behaviour preserved; suite 3030 pass, lint 0 errors. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate core hub (2.5k LOC, 68 dependents) to TS (batch 9) ADR-457 build-at-publish: get-shit-done/bin/lib/core.cjs -> src/core.cts, preserving all 63 exports via export=. All sibling deps already migrated (shell-command-projection, model-profiles, model-catalog, worktree-safety, planning-workspace, project-root, configuration, config-schema). Strict types, no any/ts-ignore; config-schema lazy require hoisted (non-circular). Behaviour preserved (independently verified: core's shard 3030 pass / 0 fail). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * test(#537): make ESLint-coverage + test-sprawl checks migration-aware #551 test hardcoded 12 now-migrated modules as "hand-written, must be linted"; that invariant is obsoleted by the ADR-457 migration. Rewrite it to a filesystem-driven invariant that holds at every stage: a bin/lib/*.cjs must be eslint-ignored IFF it has a src/*.cts source (tsc-generated), else linted (covers package-identity, which has no TS source). Also eslint-ignore config-types.cjs (has a src counterpart) and drop the redundant tests/clock.test.cjs (clock already covered by clock-seam + bug-474 tests), which tripped the lint-test-file-count ratchet. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate 9 Wave-5 router/inventory modules to TS (batch 10) ADR-457 build-at-publish: phases/verify/init/agent/task/validate/roadmap/state command routers + workstream-inventory. Router handler results typed against core's exported shapes; behaviour preserved (caught+fixed a --verify boolean flag regression mid-migration). Full suite green across all shards (only the 4 local gpg-env changeset-notes failures remain; CI passes them). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate 7 Wave-5 modules to TS (batch 11) ADR-457 build-at-publish: gap-checker, docs, check-command-router, frontmatter, learnings, gsd2-import, profile-pipeline. Behaviour preserved; full suite green across all shards (only the 4 local gpg-env failures remain). Also broadens atomic-write-coverage.test.cjs to accept the tsc-compiled namespace-import form while still asserting platformWriteSync is called (safety guard intact). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate config + profile-output to TS (batch 12) ADR-457 build-at-publish: config (729 LOC), profile-output (1142 LOC). All exports preserved; cmdMigrateConfig de-asynced (migrateOnDisk is sync, awaited caller tolerates it). Behaviour preserved; suite green across all shards (only the 4 local gpg-env failures). Wave 5 complete. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate 5 Wave-6 modules to TS (batch 13) ADR-457 build-at-publish: template, uat, workstream, roadmap, audit. Behaviour preserved (dead toPosixPath import dropped from audit; inline requires hoisted). Suite green across all shards (only the 4 local gpg-env failures). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate commands + state hubs to TS (batch 14) ADR-457 build-at-publish: commands (1305 LOC), state (2074 LOC, 17 dependents). All exports preserved; inner requires kept non-hoisted where load-order matters (install.js, per-call security); acquireStateLock cast inlined to preserve the err.code source token a structural test inspects. Behaviour preserved; suite green across all shards (only the 4 local gpg-env failures). Wave 6 complete. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate milestone to TS (batch 15a, hand-authored) ADR-457 build-at-publish: milestone -> src/milestone.cts. Authored directly (subagent capacity was unavailable). Also relaxes core.output()'s 3rd param to optional, matching its real always-optional call contract (unblocks remaining 2-arg output callers). Behaviour preserved; suite green across all shards (only the 4 local gpg-env failures). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537): migrate phase, verify, init to TS (batch 15, final modules) ADR-457 build-at-publish, Wave 7 (the last hubs): phase (1608 LOC), verify (1615), init (2113). Adds src/package-identity.d.cts so verify can import the permanently value-baked package-identity.cjs under strict TS. Fixes two regressions the migration introduced in verify: restore cmdValidateHealth's `return result` (callers/tests read result.warnings — it is NOT side-effect-only), and make the bug-3384 source-pattern test tolerant of the tsc-compiled bracket-notation form of the git_list_failed->W020 branch (behaviour intact). Full suite green across all shards (only the 4 local gpg-env failures); lint 0 errors. All 86 migratable bin/lib modules are now TypeScript sources. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#537): finalize ADR-457 migration — retire tsconfig.lint.json All hand-written bin/lib/*.cjs are now src/*.cts sources, so the checkJs stopgap tsconfig.lint.json (unused; not wired into eslint, scripts, or CI) is deleted per ADR-457's final step. Also gitignore the tsc-generated config-types.cjs (was still committed) for consistency with every other emitted artifact. package-identity.cjs stays value-baked (declared via src/package-identity.d.cts). Suite green; #551 ESLint-coverage test green. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#537): add prepare script so unpacked/git installs build bin/lib artifacts ADR-457 build-at-publish: bin/lib/*.cjs are now gitignored, built by tsc. The prepack/prepublishOnly hooks cover `npm pack`/publish, but `npm install -g <dir>` and git installs run the `prepare` lifecycle — which was missing — so the unpacked install shipped without the compiled .cjs and failed at startup with "Cannot find module './lib/core.cjs'" (caught by the smoke-unpacked CI job). Add `prepare` mirroring prepublishOnly (build:lib + build:hooks). prepare does NOT run for registry consumers (they get the pre-built tarball), only for source/local/pack installs. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#537): make CI build/lockfile checks work with gitignored bin/lib artifacts ADR-457 build-at-publish exposed two CI assumptions that bin/lib/*.cjs are always present on disk: - check:env's lockfile-sync ran `npm ci --dry-run`, which now triggers the `prepare` build (tsc) — but it runs before deps are installed, so tsc is absent and it misreported the lockfile as out of sync. Add --ignore-scripts (a lockfile check must not build). - the lint-tests job installs with --ignore-scripts (no prepare build), but lint:skill-deps require()s the built install-profiles.cjs. Add an explicit `npm run build:lib` step after install. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#537): narrow prepare to build:lib only (unbreak packed-smoke pack step) prepare running build:hooks emitted "✓ Copying ..." stdout during `npm pack`, which the install-smoke "Pack root tarball" step captures into $GITHUB_OUTPUT — breaking it with "Invalid format". build:lib (tsc) is silent on success and is all the unpacked/source install needs (the smoke-unpacked assertions exercise gsd-tools, i.e. bin/lib, and tolerate hook setup with `|| true`). Matches prepack. build:hooks still runs on prepublishOnly for real publishes. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#537): wire Stryker mutation gate to build-at-publish layout The gate scored 0.00 because it mutated changed bin/lib/*.cjs that (a) were generated artifacts and (b) included modules with no coverage in the command's test set. Rework: mutation.yml now derives changed COVERED modules from src/*.cts and maps them to their built bin/lib/*.cjs; Stryker mutates those built artifacts with a no-rebuild command (mutating src/*.cts + per-mutant tsc was ~3x over the 30-min CI budget). NOTE: with the gate now correctly measuring the covered modules, their actual mutation score is 42.94% (< break 50) — a pre-existing test-coverage gap (adr-parser/prompt-budget/etc.), not introduced by this behaviour-preserving migration. Reaching 50 needs more tests, a threshold/scope change, or a waiver — a maintainer decision. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * test(#537): raise mutation coverage of covered modules above the 50 gate Adds focused example-based unit tests that kill surviving mutants in the two lowest-scoring covered modules: - tests/prompt-budget.unit.test.cjs (112 tests): 17.9% -> 97.9% - tests/adr-parser.unit.test.cjs (205 tests): 44.7% -> 89.4% Both wired into stryker.config.mjs's command. Fresh full run over the 6 covered modules now scores 82.25% (>= break 50); every covered module is >= 68%. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * enhancement(#537,#609): parallelize mutation gate via dynamic per-module matrix The serial Stryker run timed out at 30 min once the migration's added tests made every mutant re-run ~300 tests. Replace it with a dynamic matrix so the gate completes well under budget — folded into this PR (was tracked as #609) because it's a prerequisite for this PR's mutation gate to pass. - scripts/mutation-matrix.cjs: single source of truth (covered-module -> test files) computing changed covered modules from git diff -> {has_work, matrix}. - mutation.yml: detect -> dynamic `matrix: fromJSON(...)` mutate job (one parallel shard per changed module, scoped via MUTATION_TEST_CMD to only that module's tests, 15-min/shard) -> summary job that KEEPS the legacy check name "Stryker mutation score (changed files only)" so branch protection is unchanged. Per-shard jobs report as "Stryker (<module>)". - stryker.config.mjs: commandRunner.command reads MUTATION_TEST_CMD (falls back to the full command locally). Closes #609. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * test(#537,#609): give each mutation shard ≥50% on its own tests; drop blacksmith note Per-module sharding revealed that active-workstream-store (46.5%) and frontmatter (7.4%) only cleared 50% in the old serial run via timeout-noise from the bloated 300-test command; on their own tests they were below the gate. Add focused unit tests: - tests/active-workstream-store.unit.test.cjs (115 tests): 46.5% -> 81.9% - tests/frontmatter.unit.test.cjs (165 tests): 7.4% -> 63.4% Both wired into scripts/mutation-matrix.cjs (per-module test map) and stryker.config.mjs DEFAULT_TEST_CMD. All 6 covered modules now clear break:50 with only their own tests (config-schema/context-utilization/prompt-budget/ adr-parser already did). Also removes the leftover blacksmith TODO comment — GitHub-hosted runners only; speed comes from parallel per-module shards. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * test(#537,#609): strengthen prompt-budget tests to clear the gate on its own tests prompt-budget scored 39.58% when mutation-tested with ONLY its own tests (the way the per-module CI shard runs it) — an earlier ~98% reading was inflated by accidentally running the full multi-module command. Add 96 targeted tests to tests/prompt-budget.unit.test.cjs (exact note-template text, plan-truncation arithmetic/percentages, drop-block strings, noteInjected/hardFailed booleans): scoped score 39.58% -> 68.75% (>= break 50). All 6 covered modules now clear the gate on their own tests. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>	2026-06-02 11:45:01 -04:00