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ca2644a71abaed249594f2c63b458c18da278f4b
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Author SHA1 Message Date
Tom Boucher
ca2644a71a fix(worktree): unlock-retry on locked cleanup + startup orphan sweep (#3707) (#3719) 
* fix(worktree): unlock-retry on locked cleanup + startup orphan sweep (#3707)

Two root causes fixed:

1. **In-session cleanup blocked**: `executeWorktreeWaveCleanupPlan` now attempts
   `git worktree unlock <path>` then retries `git worktree remove --force` when the
   initial single-force remove fails on a locked worktree. Previously every cleanup
   after a successful merge was silently blocked.

2. **Cross-session orphan accumulation**: new `reapOrphanWorktrees` helper sweeps
   `.git/worktrees/*/locked` at startup. It reaps entries where the pid is dead,
   the branch tip is an ancestor of the default branch (ancestry guard prevents data
   loss on squash-merge repos), and the lock mtime is older than 5 minutes (race
   guard). Wired into `quick.md` and `execute-phase.md` startup blocks guarded by
   `USE_WORKTREES != false`.

SDK: adds `worktree.reap-orphans` query command (routes through gsd-tools.cjs).
Tests: 11 real-fs tests covering unlock-retry, dead-pid reap, live-pid skip,
unmerged skip, fresh-mtime skip, idempotent double-call, and structural wiring.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* chore(changeset): add Fixed fragment for PR #3707 (worktree orphan cleanup)

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(worktree): fix test portability on Windows + macOS for bug-3707 reap tests

- worktreeMeta helper: replace /\/\.git$/ with /[/\\]\.git$/ so the
  gitdir path suffix is stripped on both Windows (backslash) and Unix.
- worktreeMeta helper: normalize CRLF→LF before splitting porcelain
  blocks, fixing block parsing when git emits CRLF on Windows.
- reapOrphanWorktrees: replace single 'main' rev-parse with a
  [defaultBranch, 'main', 'master'] candidate loop so test fixtures
  without a remote origin (where branch may be 'master') don't bail
  early. Intentionally excludes 'HEAD' to prevent false reaping when
  HEAD is detached or on a feature branch (Codex adversarial finding).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(worktree): CI green — macOS symlink path, Windows test helper, pid portability, EPERM liveness

Four fixes to get macOS + Windows CI from red to green:

1. **macOS symlink mismatch** (worktree-safety.cjs): `reapOrphanWorktrees` now
   builds a canonical→listed path map from `git worktree list --porcelain` using
   `fs.realpathSync.native`. Uses the listed path (as git knows it) for
   `git worktree unlock/remove`, not the gitdir-derived path.  Fixes the
   `/var/folders` vs `/private/var/folders` discrepancy on GitHub macOS runners
   where `git worktree unlock <realpath>` was silently failing because git's
   list stored the unresolved symlink path.

2. **Windows path separator in test helper** (test file): `worktreeMeta`
   `.replace(/\/\.git$/, '')` → `.replace(/[/\\]\.git$/, '')`. On Windows,
   git writes backslash separators in the gitdir file; the Unix-only regex was
   causing `Cannot find .git/worktrees/<name>` for all Suite 2 tests.

3. **Non-portable PID in tests** (test file): All `'999999'` dead-PID literals
   replaced with `deadPid()` helper that spawns a real short-lived child, captures
   its PID, and returns it after exit. Eliminates flakiness on Linux systems where
   `pid_max` can reach 4194304, making 999999 a live PID.

4. **EPERM fail-closed in isPidAlive** (worktree-safety.cjs): `catch { return false }`
   → checks `err.code === 'EPERM'` and returns `true` (alive). On Windows and
   cross-user scenarios, `process.kill(pid, 0)` throws EPERM for live but
   inaccessible processes; treating that as dead would reap a live worktree.

Adversarial review via codex confirmed:
- Squash-merge repos: fail-closed (CONCERN, not BUG — by design, not data-loss)
- canonicalToListed map: SAFE (fail-closed on realpathSync error)
- Concurrent reapers: SAFE (both prune; second gets skipped: remove_failed)
- Startup blocking: CONCERN (no global cap, 10s/call × N worktrees) — tracked,
  not fixed here (requires separate perf work)
- gsd-sdk missing: SAFE (quick.md checks and fails fast with guidance)

All 27 local tests + Docker (holodeck) green.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(worktree): address codex adversarial findings — fail-closed default branch + CRLF map

Two fixes from codex adversarial review of PR 3718:

1. **Default branch resolution (data-loss risk)**: `reapOrphanWorktrees` now
   uses `refs/remotes/origin/<branch>` exclusively when a remote is configured.
   If `origin/HEAD` is absent but a remote exists, we bail out (fail-closed)
   rather than falling back to a local `main`/`master` that may not be the
   real integration branch.  The `main`/`master` fallback is only used when
   there is provably no remote (local-only test fixtures).

2. **CRLF normalization in canonical-path mapper**: The `worktree list
   --porcelain` output was split on '\n\n' without normalizing CRLF first.
   On Windows, git emits CRLF, which caused block-splitting to fail and
   left the canonicalToListed map only partially populated, weakening the
   symlink/path-mismatch fix introduced earlier.

3. **Windows 8.3 short-path fix (test helper)**: Both `beforeEach` blocks
   now call `resolvedTmpDir()` which pre-resolves `os.tmpdir()` via
   `fs.realpathSync.native` so temp paths avoid RUNNER~1-style short names
   that git stores in long form, causing worktreeMeta path comparisons to
   fail on Windows CI.

All 11 real-fs + 16 unit tests green locally.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(worktree): adversarial findings + macOS CI path-mismatch fix

## Root cause (macOS CI fail)
`reapOrphanWorktrees` stored `worktreePath` (gitdir-derived, real path via
git's symlink resolution, e.g. `/private/var/folders/…`) in results, while
the test's `wtDir` used the unresolved symlink form (`/var/folders/…`).  After
reaping, `canonicalPath(wtDir)` can no longer call `realpathSync.native`
(directory gone), so it falls back to `path.resolve` — which returns the
symlink form — causing the `result.find()` comparison to miss.

## Fixes applied

### Source — worktree-safety.cjs
1. **Finding 1 (fail-closed PID check)**: Non-parseable lock content (e.g.
   `"Locked by claude-code agent-xxx"`) is now treated as ALIVE with reason
   `lock_owner_unknown`, not as dead.  Previously it fell through as dead.
2. **Finding 1b (EPERM safe)**: `isPidAlive` call wrapped in try/catch; any
   thrown error (EPERM = process exists but cross-user on Windows) → ALIVE.
3. **Finding 2 (startup warning)**: `cmdWorktreeReapOrphans` now writes a
   one-line stderr warning when ≥1 entry is skipped or when reaper throws,
   while keeping exit-zero so workflows don't break.
4. **Finding 3 (default-branch discovery)**: Local-only fallback now tries
   `init.defaultBranch` config and HEAD symref before `main`/`master`, so
   repos configured with `trunk`, `dev`, etc. get correct orphan detection.
5. **macOS path fix**: Result entry for reaped worktrees now uses `gitKnownPath`
   (from `git worktree list`) instead of `worktreePath` (from gitdir file),
   ensuring the caller always sees the path git uses for the worktree.

### Test — bug-3707-locked-worktree-cleanup.test.cjs
6. **macOS CI fix**: Pre-compute `wtDirCanonical = canonicalPath(wtDir)` before
   calling `reapOrphanWorktrees` so the comparison works after removal.
7. **Gap 1**: New test — Claude Code lock format (`"Locked by claude-code …"`)
   must not be reaped; asserts `status=skipped, reason=lock_owner_unknown`.
8. **Gap 2**: New test — `isPidAlive` throwing EPERM → must not reap.
9. **Gap 3**: New test — repo with `init.defaultBranch=trunk`; merged worktree
   must be reaped (verifies trunk is discovered as the integration branch).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(test): raise waitForStoppedAt timeout 2 s → 5 s for Windows/Node22 CI load

Subprocess write latency exceeds 2 s on loaded windows-latest/Node22 runners
(test duration was 6181 ms); 5 s gives sufficient headroom without changing
any production behaviour.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

---------

Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>
 2026-05-20 15:22:12 -04:00
Tom Boucher
e5461ad4e2 refactor(tests): consolidate Dispatch Pipeline Module — 7 files → 1 (#3733) 
Consolidates 7 sibling test files for sdk/src/query/query-dispatch.ts and
its stage handlers into a single query-dispatch.test.ts with 8 describe
blocks (699 LOC, 53 tests). Deletes 3 clean shim sources with zero non-test
importers. Leaves query-dispatch-formatting.ts and query-dispatch-error-mapper.ts
in place (non-test importer: query-fallback-executor.ts — deferred to #3732).

- query-dispatch-input-validation.ts deleted (clean shim)
- query-dispatch-plan.ts deleted (clean shim)
- query-dispatch-result-builder.ts deleted (clean shim)
- 6 per-stage test files deleted (consolidated into query-dispatch.test.ts)
- counter-tests added per Contract 6 for each stage field
- CONTEXT.md Glossary updated with Dispatch Pipeline Module entry

Closes #3731

Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>
 2026-05-19 16:49:04 -04:00
Tom Boucher
6a5fa59129 feat(3081): auto-trim review prompts for small-context model reviewers (#3708) 
* feat(3081): auto-trim review prompts for small-context model reviewers

Adds review.max_prompt_tokens and review.max_prompt_tokens_per_reviewer
config keys. When configured, the /gsd-review workflow deterministically
trims the assembled prompt before sending to each reviewer (drop CONTEXT
→ RESEARCH → REQUIREMENTS; head-shrink PROJECT.md; tail-truncate PLANs
proportionally; reserve disclosure-note tokens upfront). Trim metadata
is recorded in REVIEWS.md frontmatter. Reviewer is skipped with a
warning if even the minimum review set exceeds the budget.

Closes #3081

* fix(3081): register prompt-budget in SDK query registry and update inventory manifest

review.md references `gsd-sdk query prompt-budget` at three call sites, but the
command had no handler in the SDK registry — failing the registry-integration
drift-guard test on all 6 CI matrix legs. Added a native TypeScript SDK handler
(sdk/src/query/prompt-budget.ts) that ports the applyBudget logic from the CJS
module, registered it in DOMAIN_STATIC_CATALOG, and regenerated
docs/INVENTORY-MANIFEST.json to include the new cli_modules/prompt-budget.cjs entry.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(3081): bump ws to 8.20.1 and allowlist prompt-budget sibling pair

Two additional CI failures after the registry fix:

1. ws moderate CVE (GHSA-58qx-3vcg-4xpx, uninitialized memory disclosure):
   The advisory covers ws >=8.0.0 <8.20.1. Both root and sdk/package.json
   pinned ^8.20.0 which resolved to 8.20.0. Bumped both to 8.20.1 to clear
   the npm audit drift-guard test (bug-3588-npm-audit-clean.test.cjs).

2. lint-shared-module-handsync detected the new prompt-budget.ts / prompt-budget.cjs
   sibling pair without an allowlist entry. Added a cooperatingSiblings entry
   to scripts/shared-module-handsync-allowlist.json with classification and
   justification matching the established pattern.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(3081): align prompt-budget skip semantics across CJS and SDK dispatch paths

Replace brittle `[ $EXIT -eq 2 ]` guards with `[ $EXIT -ne 0 ]` in all three
local-reviewer blocks (Ollama, LM Studio, llama.cpp) in workflows/review.md.
Any non-zero exit from prompt-budget now triggers a skip with a descriptive
warning — exit 2/11 prints "budget too small", any other non-zero prints
"unexpected exit code". This ensures the SDK bridge dispatch path (exit 11
via GSDError(Blocked)) triggers the same skip as the CJS path (exit 2).

The SDK handler (sdk/src/query/prompt-budget.ts) already writes both metadata
and prompt files before throwing, so no change needed there.

The Ollama block also gains the missing OLLAMA_SKIP guard so the reviewer
invocation is actually skipped (previously the block only suppressed the
OLLAMA_PROMPT_FILE update but still ran the curl invocation).

SDK integration path (hardFailed via GSDError(Blocked) → exit 11) is covered
by handler unit tests in tests/prompt-budget.test.cjs; no gsd-sdk-*.test.cjs
exercising the full bridge dispatch for this command exists yet — that gap
remains and is documented here.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix prompt-budget trim ordering and review guard follow-ups

* perf: optimize prompt-budget and dedup reviewer trim workflow

* fix(3708): drop source-grep theater tests to satisfy lint-no-source-grep

All four test files added in commit 2df566ed were pure source-grep theater:
they read .cjs / .ts / .md source files and asserted that specific string
literals were present or absent. None exercised runtime behaviour.

Deleted:
- tests/gsd-tools-memory-optimizer.test.cjs   — 7 includes() on gsd-tools.cjs
- tests/prompt-budget-hotpath-optimizer.test.cjs — includes() on prompt-budget.cjs + .ts
- tests/prompt-budget-io-optimizer.test.cjs   — includes() on prompt-budget.ts + gsd-tools.cjs
- tests/review-workflow-budget-dedup.test.cjs — includes() on review.md

Behavioural coverage for the prompt-budget feature already exists in
tests/prompt-budget.test.cjs and tests/prompt-budget-cli.test.cjs (also
added by this PR). No replacement tests needed.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(3708): correct budget-pressure threshold and minSet accounting

Two bugs in applyBudget caused premature trimming and false hard-fails:

1. UNNEEDED_TRIM: budgetUnderPressure compared baseTokens against
   effectiveBudget - NOTE_RESERVE_TOKENS, triggering trim pressure 80
   tokens before the budget was actually exceeded. Fix: compare against
   effectiveBudget directly; NOTE_RESERVE_TOKENS are still reserved in
   contentBudget once real pressure is confirmed.

2. FALSE_HARDFAIL: minSet included NOTE_RESERVE_TOKENS unconditionally,
   treating the note as mandatory even when no trim would occur and no
   note would be injected. Fix: exclude NOTE_RESERVE_TOKENS from minSet;
   a prompt that fits untrimmed needs no note and must not hard-fail.

Both fixes applied in CJS and TypeScript implementations. Two regression
tests added (cycles 11 and 12) that reproduce each case behaviorally.

---------

Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>
 2026-05-18 23:13:09 -04:00
Cristian Uibar
c2dc9e2532 Fix W002 false positives on archived phase references in STATE.md body (#3655) 
* W002 health check: cross-reference milestones archive for STATE.md phase refs

After /gsd-complete-milestone, phase dirs move into milestones/vX.Y-phases/
and their `#### Phase N:` headings in ROADMAP.md are collapsed inside
<details> blocks. The ROADMAP heading scan misses them, so W002 fired for
every archived phase number mentioned in STATE.md's historical narrative body
("Recent", "Decisions", "Deferred Items") — leaving every project that ever
ran /gsd-complete-milestone permanently degraded with proportional W002 noise.

Union archived milestone phase directories into the validPhases set used by
the W002 check, mirroring the same milestone-archive lookup that W006
already uses (sdk/src/query/validate.ts:723-736).

Closes #3652

* Address review: use shared regex constants and mirror W002 archive fix into CJS path

CodeRabbit (PR #3655 review 1): the ad-hoc /^(\d+[A-Z]?(?:\.\d+)*)/i used to
extract phase tokens from archived phase dirs would skip project-code-prefixed
names like `CK-64-...`. Switch the new SDK block to the shared
PHASE_TOKEN_FROM_DIR_RE / MILESTONE_ARCHIVE_DIR_RE constants (defined at
sdk/src/query/validate.ts:32-33) so prefixed archives are recognised. Added a
companion regression test using `CK-`-prefixed dirs.

Codex review: the shipped CJS health command path (get-shit-done/bin/lib/verify.cjs
cmdValidateHealth, routed by validate-command-router.cjs) only unions
collectDiskPhases (active archive only) plus ROADMAP heading scan — same bug as
the SDK had. Port the all-archive scan into the CJS path via listMilestoneArchiveDirs
+ PHASE_TOKEN_FROM_DIR_RE (already declared at verify.cjs:401-402). Added a CJS
regression test covering the multi-sub-milestone (v1.3a + v1.3b) scenario from
the issue report.

Adds .changeset/lucky-lynx-wave.md.

* Address Gemini findings: shared regex + helper reuse + cross-platform path

P1 #2 — refactor the new W002 archive-scan block to reuse the existing
listMilestoneArchiveDirs helper (sdk/src/query/validate.ts:40) instead of
re-implementing readdir + filter inline. Eliminates duplication and prevents
the two call sites from drifting apart.

P2 #4 — listMilestoneArchiveDirs sorted by `a.slice(a.lastIndexOf('/') + 1)`,
which returns the full path on Windows where path.join produces backslashes.
Switch to path.basename(a) so the numeric version sort works cross-platform.
Brings the SDK helper in line with the CJS sibling at
get-shit-done/bin/lib/verify.cjs:411 which already uses path.basename.

P1 #1 / P2 #5 — the pre-existing W006/W007 archive + active phase scans
(Check 8) used an ad-hoc `^(\d+[A-Z]?(?:\.\d+)*)` regex that silently skipped
project-code-prefixed phase dirs like `CK-64-foo`, so W006 fired for a
correctly-archived phase and W007 fired for a correctly-on-disk phase. Switch
both scans to the shared PHASE_TOKEN_FROM_DIR_RE constant declared at
sdk/src/query/validate.ts:32. The W006 archive loop also now reuses
listMilestoneArchiveDirs for consistency.

P2 #6 — strengthen the CK-prefix regression test to also assert no W006
fires for `#### Phase 64: Prior shipped` (placed inside <details> so the
heading scan picks it up while the on-disk scan does not), pinning the
shared-regex behaviour in the W006 path.

* CI: switch retired /gsd-<cmd> comment syntax to canonical /gsd:<cmd>

The bug-2543 slash-namespace invariant lint scans get-shit-done/bin/lib/**
for /gsd-<cmd> patterns and fails CI when one slips into a comment. Use the
canonical /gsd:complete-milestone form in the new verify.cjs comment (and
mirror the change in the SDK + tests + changeset entry so all docstrings
referencing the milestone-completion command share one spelling).

Also: extract a small forEachArchivedPhaseToken helper in validate.ts (Gemini
P3 finding from review pass 2) so Check 4 (W002) and Check 8 (W006) share the
archive-walking loop instead of inlining it twice.

* Address rev3 review: shared regex parity, numeric sort, drop dead try/catch

Gemini P1 — Check 4's flat phases/ scan still used the ad-hoc
/^(\d+[A-Z]?(?:\.\d+)*)/ regex while the archive scan used the shared
PHASE_TOKEN_FROM_DIR_RE. Project-code-prefixed dirs (e.g. CK-65-current) on
the flat layout would have slipped past validity, so the W002 check could
still mis-classify them. Use PHASE_TOKEN_FROM_DIR_RE here too.

Gemini P3 — `[...validPhases].sort()` ordered tokens alphabetically, producing
error messages like "phases 1, 10, 19, 2, 20" instead of "1, 2, 10, 19, 20".
Switch both SDK and CJS to numeric localeCompare so the displayed list is
human-readable. Mirrored in both paths.

Grok P3 — the CJS Check 4 archive block wrapped listMilestoneArchiveDirs in
an outer try/catch even though the helper already swallows ENOENT/EACCES into
[]. The outer catch was unreachable. Removed; only the per-archive readdir
needs a catch.

Grok P2 / Gemini P1 (CJS Check 8 archive scan) — the assertion that CJS
Check 8 needs the same archive union as Check 4 was repeatedly raised across
review passes. It is incorrect: Check 8 filters ROADMAP.md through
extractCurrentMilestone() before scanning headings, which strips shipped
milestones (collapsed in <details> or not) so archived phase numbers never
reach `roadmapPhases`. Added an inline note documenting this and a positive
regression assertion in the CJS test that W006 does NOT fire for the
archived phases in the multi-sub-milestone fixture. (Skipped a parallel
W007 assertion because the active-archive fallback in
getActiveMilestoneArchiveDir is pre-existing behavior unrelated to #3652.)

* Port forEachArchivedPhaseToken helper to verify.cjs for SDK parity

Gemini rev5 P2 — the CJS Check 4 inlined the archive-walking loop while
the SDK already factored it into forEachArchivedPhaseToken(). Add a
mirror helper in verify.cjs so both seams use the same primitive,
matching the cooperating-sibling pattern documented in
scripts/shared-module-handsync-allowlist.json.

* ci: retrigger to clear unrelated TOCTOU flake

The previous CI run failed at the pre-existing #1925 concurrency test
(state add-blocker concurrent calls) on macos-24 and ubuntu-22 but
passed on ubuntu-24 — and the same test passed on the prior CI run of
this branch (commit 8a246916). The state add-blocker code path is
completely independent of the W002 archive-union changes in this PR.
 2026-05-18 00:14:10 -04:00
Tom Boucher
a6f10a2cd7 fix(init): derive nested-worktree flag from git show-prefix 2026-05-17 01:43:14 -04:00
Tom Boucher
ae63cbe557 feat(3575): Phase 6 — CJS↔SDK seam migration end-to-end complete (#3524) (#3577) 
* feat(3575): Phase 6 enforcement hardening + retrospective (#3524 feature-complete)

Phase 6 of the CJS↔SDK hard-seam migration (parent #3524). Final
phase per the PRD. After this lands the migration is feature-complete:
shared Modules from Phases 1-4 are in place, the runtime-bridge
primitive from Phase 5.0 is wired with the state.* family proof in
Phase 5.1 (PR #3574), and Phase 6 hardens the seam against future
drift via lint, CODEOWNERS, and retrospective documentation.

## What landed

- scripts/lint-shared-module-handsync.cjs (274 lines) — the
  drift-prevention gate. Scans bin/lib/*.cjs and looks for same-named
  sdk/src/<name>.ts or sdk/src/query/<name>.ts (excluding generated
  artifacts). Pairs not on the allowlist fail the lint with a clear
  message: either add to allowlist with justification, or migrate to
  a shared Module. Supports --root, --allowlist, --cjs-dir, --sdk-src,
  --warn-all flags for testability.
- scripts/shared-module-handsync-allowlist.json (148 lines) — two
  categories:
  - cooperatingSiblings (14 pairs) — legitimate Readers/Adapters
    that consume shared Modules or run structurally-different
    runtime paths.
  - migrateMeBacklog (8 pairs) — known drift anti-patterns that ARE
    on main today (config, decisions, intel, model-catalog, plan-scan,
    schema-detect, secrets, workstream-name-policy). Lint warns but
    does not fail on these; documented in the retrospective as
    candidate Shared Module migrations.
- tests/lint-shared-module-handsync.test.cjs (285 lines, 11 cases)
  — proves the lint catches new drift, honors the allowlist, and
  exits 0 on the current tree.
- .github/workflows/test.yml — new "Shared Module hand-sync drift
  check" step after the freshness checks.
- .github/CODEOWNERS — appended 11 architecture-owned path rules for
  source-of-truth files (Shared Module dirs, manifest JSONs, runtime
  bridge, lint script, allowlist). Existing blanket rule preserved.
- docs/agents/cjs-sdk-seam.md (280 lines) — full retrospective +
  guide:
  - Migration overview table linking Phases 1-6 with PR numbers.
  - 15 historical drift bugs (#1535 ... #3523) each mapped to the
    Phase 6 enforcement layer that would have blocked them.
  - "Guide: Adding a new Shared Module" — step-by-step using Phase 1
    (state-document) as the worked example.
  - "Guide: Adding a new canonical command" — step-by-step using
    Phase 5.1 (state.update) as the worked example.
  - "Open follow-ups" listing the 8 MIGRATE_ME pairs, per-family
    Phase 5.2+ candidates pending maintainer authorization, sync
    bridge workstream support, and Phase 5.1's parity divergences.
- CONTRIBUTING.md — short cross-reference paragraph in the
  Architecture & Domain Standards section.

## Audit findings

All 5 freshness checks from Phases 0-4 are already wired in CI:
command-aliases, state-document, configuration,
workstream-inventory-builder, project-root. Phase 6 adds the 6th
(hand-sync drift check) for total enforcement coverage.

## Numbers

- Full CJS suite: 9335/9335 pass (baseline 9323 + 11 new lint
  tests + 1 cooperating).
- Lint passes on current tree: 14 cooperating siblings + 8 backlog
  pairs accounted for, 0 unauthorized drift pairs.
- Lint exits 1 (fails CI) on an intentional new hand-synced pair
  added to a fixture — verified by the test suite.

Closes #3575. Closes the structural drift surface of #3524.

* chore(3577): add changeset fragment for Phase 6

* feat(3575): Phase 6 end-to-end completion — CJS↔SDK seam migration done

Per maintainer correction: Phase 6 is THE final phase and must
complete the migration end-to-end. This commit absorbs Phase 5.1's
work (state.* router + worker fix), finishes the remaining per-family
router migrations, completes all five resolvable Shared Module
extractions, resolves the parity divergences, lands native workstream
support in the sync bridge, and ships the lint + CODEOWNERS +
retrospective from the original Phase 6 scope.

After this commit the CJS↔SDK seam migration started in #3524 is
feature-complete. No follow-up "Phase 5.x" or "Phase 7" should be
needed — the only documented carve-outs are three pairs that
intentionally cannot be migrated (config CLI handlers, intel async
wrapper, model-catalog already on the shared-JSON pattern).

Cherry-picked state.* from Phase 5.1 (PR #3574 absorbed). Migrated
verify.*, init.*, phase.*, phases.*, validate.*, roadmap.* via the
same executeForCjs delegation pattern. Migrated the inline
gsd-tools.cjs cases for frontmatter.*, config-* CLI, and non-family
commands (generate-slug, current-timestamp, find-phase, docs-init)
with shared _dispatchNonFamily helper + _tryLoadSdkBridge loader.

CJS-native carve-outs documented: config-path, migrate-config,
detect-custom-files (no SDK counterpart yet); state.complete-phase
(no SDK counterpart yet); validate.context (CJS-only inline logic
with no clean SDK port); phases.archive (SDK-only).

- plan-scan (Module-via-generator from sdk/src/query/plan-scan.ts)
- secrets (Module-via-generator)
- schema-detect (Module-via-generator)
- decisions (Module-via-generator; SDK regex aligned to CJS
  alphanumeric IDs to preserve project compatibility)
- workstream-name-policy (Module-via-generator; SDK extended with
  hasInvalidPathSegment and isValidActiveWorkstreamName that CJS
  callers depend on)

Each ships with: SDK source-of-truth, generator at
sdk/scripts/gen-<name>.mjs, freshness check at
sdk/scripts/check-<name>-fresh.mjs, parity test at
tests/<name>-generator.test.cjs, CJS shim at
get-shit-done/bin/lib/<name>.cjs, scripts in sdk and root
package.json, pre-commit drift block, CI workflow step, CODEOWNERS
rule, INVENTORY.md row.

- config (config.cjs vs sdk/src/config.ts) — CJS file is CLI-handler
  surface (cmdConfigGet/Set/etc.); SDK file is loadConfig wrapper
  (already migrated in Phase 2). Zero logical overlap. Classified
  as CJS-CLI-ONLY in the allowlist.
- intel (intel.cjs vs sdk/src/query/intel.ts) — SDK is the async
  QueryHandler wrapper of the CJS module; intentional split per the
  SDK file's own docstring. Classified as cooperating-sibling.
- model-catalog (model-catalog.cjs vs sdk/src/model-catalog.ts) —
  both already consume sdk/shared/model-catalog.json (ADR-0003).
  No constants duplicated. Classified as ADAPTER-OVER-MODULE.

- state.record-metric: SDK aligned to CJS auto-create of
  ## Performance Metrics section when absent. Parity assertion now
  exact equality.
- state.prune: SDK aligned to CJS disk-based phase counting via
  stateExtractField. Parity assertion now exact equality. SDK unit
  tests updated to match.

GSDTransport.shouldUseNative no longer forces subprocess when
request.workstream is set — the Phase 5.0 worker fix already threaded
workstream through dispatchNative + registry.dispatch, making the
subprocess force unnecessary. state-command-router.cjs's workstream
fallback guard removed. cjs-sdk-seam.md and the regression test
updated to document the resolution.

Unchanged from the previous commit on this branch. The lint now
reports 22 cooperating siblings, 0 backlog pairs. The retrospective
section "Open follow-ups" is reduced to the three intentional
carve-outs above; the four stale subsections (8 MIGRATE_ME pairs,
per-family Phase 5.x candidates, workstream support, parity
divergences) are gone because they're all resolved in this commit.

- Full CJS suite: 9441/9441 pass (baseline pre-Phase-6 was 9323;
  +118 from the Phase 6 work — 11 lint tests + 12 state-router
  parity + 6 verify parity + 3 phase parity + 1 roadmap parity +
  24 plan-scan parity + 20 secrets parity + 18 schema-detect parity
  + 15 decisions parity + 19 workstream-name-policy parity).
- SDK vitest unit: 1863/1863 pass.
- Hand-sync lint: 22 cooperating siblings, 0 backlog pairs.
- All freshness checks: fresh.

Closes #3575. Closes the migration the CJS↔SDK seam was designed
to eliminate (#3524).

* fix(3575): lint-shared-module-handsync emits typed JSON; tests assert on IR

The lint-no-source-grep CI step rejected the original Phase 6 test
file (tests/lint-shared-module-handsync.test.cjs) because it
substring-matched on .stdout/.stderr from the lint script output —
prohibited per CONTRIBUTING.md "Raw Text Matching on Test Outputs".
Fix: add --json mode to the production lint script and assert on
typed IR fields.

## Changes

scripts/lint-shared-module-handsync.cjs:
- New --json flag. When set:
  - Success: emits { ok: true, cooperatingCount, backlogCount, warnings }
  - Unauthorized pairs: emits { ok: false, reason: 'unauthorized_pairs',
    errors: [{ relCjs, tsPaths }], warnings, cooperatingCount }
  - Missing CJS/SDK dir: emits { ok: false, reason: 'cjs_dir_missing'
    | 'sdk_src_missing', path }
- Default (human-readable) output unchanged.
- Warnings section is suppressed in --json mode (still surfaced in the
  IR's `warnings` field for tests to inspect).

tests/lint-shared-module-handsync.test.cjs:
- runLintJson() helper replaces runLint(), invoking the script with
  --json and parsing the IR.
- Every assertion now reads typed fields (payload.ok, payload.reason,
  payload.errors, payload.warnings, payload.cooperatingCount) instead
  of substring-matching stdout/stderr.
- Test count unchanged at 9 cases across 3 describe blocks.
- All pass.

## Verification

- node scripts/lint-no-source-grep.cjs → exit 0, 529 test files
  checked, 0 violations (was: 1 violation in this test file).
- node --test tests/lint-shared-module-handsync.test.cjs → 9/9 pass.
- node scripts/lint-shared-module-handsync.cjs → unchanged
  human-readable output, 22 cooperating siblings, 0 backlog pairs.
- node scripts/run-tests.cjs → 9449/9449 pass.

Addresses CI failure on PR #3577 (Phase 6 of #3524).

* fix(3575): address CodeRabbit review on PR #3577

Six findings resolved:

1. scripts/lint-shared-module-handsync.cjs — allowlist matching now
   pair-aware. Keys composite ${cjs}::${ts} instead of cjs-only, so
   an entry covering one (cjs, ts) pair no longer silently passes a
   sibling at a different ts path with the same module name.
   Header doc-comment also corrected: removed the stale claim about
   GSD_LINT_CHANGED_FILES filtering (no such code existed).

2. sdk/src/gsd-transport.ts — removed dead 'workstream_forced' member
   from the TransportDecision.reason union (no longer assigned after
   Phase 5.0 workstream-native refactor).

3. sdk/src/gsd-transport.ts — removed stale workstream interpolation
   from the subprocess-reason Error message; the field is no longer
   load-bearing for that decision path.

4. All eight generator scripts (sdk/scripts/gen-*.mjs and
   gen-state-document.ts) — replaced the manual entry-point check
   that used `new URL(process.argv[1], 'file://')`. On Windows that
   misparses `C:\…\gen-*.mjs` as scheme "c:" and breaks the check.
   Replaced with the cross-platform-safe direct comparison
   `fileURLToPath(import.meta.url) === process.argv[1]`. (Not using
   `import.meta.main` — that's only stable in Node 24+ and the
   project supports Node 22+.)

5. docs/agents/cjs-sdk-seam.md — added explicit `text` language
   specifier to the four file-path fenced blocks (lines 157, 165,
   173, 181). Closing fences correctly remain bare.

Verification

- node scripts/lint-no-source-grep.cjs → 0 violations
- node scripts/lint-shared-module-handsync.cjs → 22 cooperating
  siblings, 0 backlog (counts unchanged after pair-aware refactor)
- node scripts/lint-shared-module-handsync.cjs --json → typed IR
  unchanged
- All 9 generator freshness checks → fresh
- node scripts/run-tests.cjs → 9449/9449 pass
- sdk vitest src/gsd-transport.test.ts → 10/10 pass

Tests for pair-aware matching: the existing 9 cases in
tests/lint-shared-module-handsync.test.cjs already build fixture
allowlist entries with both `cjs` and `ts` fields, so they
implicitly exercise the new pair-aware lookup; all 9 pass.

* fix(3575): address second CodeRabbit review on PR #3577

Five new findings resolved.

1. Shared SDK bridge loader (`get-shit-done/bin/lib/cjs-sdk-bridge.cjs`)
   Eliminates seven-fold duplication of `tryLoadSdk` / `_executeForCjs`
   that lived verbatim in every `*-command-router.cjs` plus a near-identical
   variant in `gsd-tools.cjs`. The new module exposes `tryLoadSdk()`,
   `getExecuteForCjs()`, and `getSdkModule()` (the last for routers that
   pull additional named exports, e.g. state's `formatStateLoadRawStdout`).
   All eight call sites refactored to consume it. As a side benefit
   `gsd-tools.cjs` no longer imports from the private
   `@gsd-build/sdk/dist/runtime-bridge-sync/index.js` subpath; everyone now
   uses the public package entry consistently.

2. `phase remove` accepts zero positional args (#3577 review)
   `phase remove --force` previously passed validation with no phase number
   and invoked `cmdPhaseRemove(cwd, undefined, ...)`. Tightened to
   `positional.length !== 1` and added the early `return` so the handler
   never receives an undefined phase id.

3. Decisions parser regex hardened (#3577 review)
   `D-[A-Za-z0-9_-]+` allowed malformed IDs like `D--foo` and `D-_bar`.
   Tightened to `D-[A-Za-z0-9][A-Za-z0-9_-]*` so the first character after
   `D-` must be alphanumeric; internal `_`/`-` still permitted.
   Decisions generated CJS mirror regenerated.

4. plan-scan-generator test no longer uses hardcoded `/tmp` paths
   `/tmp/__gsd_test_nonexistent_dir_xyz__` and
   `/tmp/__nonexistent_gsd_test__` could collide with prior runs on shared
   CI runners. Replaced with `uniqueMissingPath()` helper that synthesizes
   `os.tmpdir()/<prefix>-<pid>-<ms>-<random>` and force-removes the path
   before returning.

5. lint-shared-module-handsync test now validates pair-aware TS matching
   Added `rejects pair when TS path differs from allowlist entry` — a
   regression guard that creates an on-disk pair at `sdk/src/query/<name>.ts`
   but allowlists the (cjs, sdk/src/<name>.ts) shape. The lint must reject
   because the (cjs, ts) tuple does not match. Demonstrates the pair-aware
   matching added in the previous commit and locks it in.

## Wiring

`cjs-sdk-bridge.cjs` added to `docs/INVENTORY.md` (count 68→69) and
`docs/INVENTORY-MANIFEST.json` regenerated.

## Verification

- node scripts/lint-no-source-grep.cjs → 0 violations (529 files)
- node scripts/lint-shared-module-handsync.cjs → 22 cooperating, 0 backlog
- node scripts/run-tests.cjs → 9452/9452 pass (was 9449 + 1 lint-test + 1
  changed plan-scan path test)
- node sdk/scripts/check-decisions-fresh.mjs → fresh
- sdk vitest src/query/decisions.test.ts → 15/15 pass

* docs(3575): correct PR/issue refs in cjs-sdk-seam.md

CodeRabbit caught two stale references that conflated the issue
number (#3575) with the PR number (#3577). Phase 6 ships as PR
#3577 closing issue #3575. Migration overview table row and the
Final Completion Summary updated accordingly.

* fix(3575): cjs-sdk-bridge actually loads the SDK (was dead-code since Phase 5.0)

## The bug

`cjs-sdk-bridge.cjs:tryLoadSdk()` resolved `require('@gsd-build/sdk')`,
but that package name is not installed in the root `node_modules`
(the SDK lives as `./sdk/` — a sibling workspace, not a dependency)
and the SDK's public entry doesn't re-export `executeForCjs` or
`formatStateLoadRawStdout` anyway. `tryLoadSdk()` always returned
false, the `_loadFailed = true` cache made every subsequent call
return false for the lifetime of the process, and every CJS router
silently fell through to the CJS handler.

The pattern shipped in Phase 5.0 (PR #3558, merged) via
`require('@gsd-build/sdk/dist/runtime-bridge-sync/index.js')` and
was inherited into the routers via `require('@gsd-build/sdk')` in
Phase 5.1 (PR #3574, merged). Both subpaths/imports failed in the
same way. CI passed for the whole CJS↔SDK migration because the
CJS fallback handlers kept running — meaning the entire claimed
"state.* delegation" never actually executed via the SDK in any
shipped run.

This is exactly the silent-drift class the Phase 6 lint and
retrospective are supposed to prevent. Catching it here closes the
loop.

## The fix

Resolve the bundled SDK by **package-relative filesystem path**:

  <root>/sdk/dist/runtime-bridge-sync/index.js
  <root>/sdk/dist/query/state-project-load.js

The `files` array in `package.json` keeps `sdk/dist` at the same
relative location inside the published tarball, so the path works
in both dev and post-install. The two-file split is necessary
because `formatStateLoadRawStdout` lives in the state handler,
not the runtime-bridge entry.

## Integration test

`tests/cjs-sdk-bridge-integration.test.cjs` proves four things and
locks the load-success invariant so this regression cannot recur:

  1. tryLoadSdk() returns true on the current checkout
  2. getExecuteForCjs() returns a function (not null)
  3. getFormatStateLoadRawStdout() returns a function (not null)
  4. executeForCjs() actually dispatches a canonical registry
     command (generate-slug) and returns an ok:true result — proving
     real SDK execution, not a silent CJS-fallback

## State-router formatter wiring

The state command router was reaching into `getSdkModule()` to pluck
`formatStateLoadRawStdout`. Replaced with the explicit
`getFormatStateLoadRawStdout()` getter so the bridge module owns
all SDK-export resolution.

## state.load --raw output mode

While the bridge was broken, the state.load --raw test happened to
pass via CJS fallback. The first SDK execution exposed a contract
mismatch: passing `mode: 'raw'` to the bridge tells the SDK to
pre-render result.data to a JSON string, but the router was also
calling `formatStateLoadRawStdout(result.data)` to project to
key=value lines — the formatter saw a string and no-op'd.

Fix: when a CJS-side rawFormatter is supplied, the router requests
`mode: 'json'` from the bridge (always get typed data) and runs the
formatter itself. When no rawFormatter, the user's --raw flag flows
through to the bridge as usual.

## Surfaced pre-existing parity gaps (NOT yet fixed)

With the bridge now actually executing the SDK, 8 `tests/state.test.cjs`
cases reveal pre-existing CJS↔SDK behavioral drift that Phase 5.1's
"104/104 pass" report could not see because the SDK was never running:

  - `state load returns error when STATE.md missing`
  - `state get returns error when STATE.md missing`
  - `state update returns error when STATE.md missing`
  - `state update reports field not found`
  - `state patch / record-metric / update-progress /
     resolve-blocker / record-session — error when STATE.md missing`
  - `add-decision --summary-file` / `add-blocker --text-file`
    (file-input path rejected by SDK security check)

Each is a real CJS↔SDK divergence that needs explicit alignment in
the SDK handler. Listed here so the next commit can address them
honestly rather than letting the broken bridge mask them again.

* fix(3575): align SDK with CJS contract — bridge-exposed divergences

The Phase 5.1 bridge fix (0fc60b0c) made executeForCjs() actually load and
dispatch. With routers now hitting the SDK in normal layouts, six CJS↔SDK
behavioral divergences became visible. This commit aligns the SDK to match
the canonical CJS contract test-by-test.

ROUTER CHANGES (mode: raw → mode: json)
All 7 CJS routers were passing `mode: raw ? 'raw' : 'json'`. With the bridge
active, `mode: 'raw'` makes the bridge pre-render result.data to a JSON string,
which CJS output() then re-stringifies — producing a JSON string of a JSON
string. Routers now always request typed JSON; CJS output() handles user-
facing rendering. Affected: gsd-tools, init, phase, phases, roadmap, state,
validate, verify routers.

SDK STATE MUTATION HANDLERS (sdk/src/query/state-mutation.ts)
state.update / record-metric / update-progress / resolve-blocker / record-
session no longer auto-create STATE.md via readModifyWriteStateMd. CJS errors
out when STATE.md is missing; SDK now does the same via an upfront existsSync
check returning {updated: false, reason: 'STATE.md not found'}. Also fixes:

  • resolve-blocker semantic: SDK returned resolved:false when no blocker
    line matched. CJS returns resolved:true whenever the Blockers section
    exists. Aligned.
  • readTextArgOrFile path validation: rejected /var/folders paths on macOS
    because /var → /private/var is a symlink. Now resolves both base and
    target via realpathSync before the prefix check.

STATE.MD STOPPED_AT SCOPING (sdk/src/query/state.ts)
buildStateFrontmatter extracted `Stopped At` from the entire body; CJS scopes
it to the ## Session section. Bug-2444 parity restored — the field no longer
bleeds in from unrelated sections of STATE.md.

PHASE_DIR_COUNT MILESTONE FILTER (sdk/src/query/init.ts)
initNewMilestone counted every directory under phases/ regardless of which
milestone it belonged to. CJS uses getMilestonePhaseFilter to count only
current-milestone phase dirs. Bug-2445 parity restored.

ARCHIVED PHASE GUARD (sdk/src/query/init.ts)
shouldDropArchivedPhaseMatch had an extra `archivedTag === milestone.version`
escape hatch that doesn't exist in CJS. CJS unconditionally drops the
archived match when the phase appears in the current ROADMAP. Removed the
escape hatch — fixes the bug #2391 regression where `init plan-phase 03`
returned the archived v1.0 phase instead of the current ROADMAP phase.

PADDING-TOLERANT ROADMAP PHASE LOOKUP (sdk/src/query/roadmap.ts)
searchPhaseInContent used `escapeRegex(phaseNum)` as the phase-number
fragment — `03` failed to match `Phase 3:` headings. CJS uses
phaseMarkdownRegexSource which emits `0*<integer>` for padding tolerance.
Restored same helper inline in roadmap.ts. Fixes bug #2391 / #3537 parity
in zero-padded phase lookups.

STATE COMMAND ROUTER STATE.MD-MISSING ERROR SURFACE
(get-shit-done/bin/lib/state-command-router.cjs)
state.get must surface "STATE.md not found" as an error (matching CJS exit
behavior); other state mutations must surface {updated: false, reason: ...}
as data. Added EXIT_ON_STATE_MD_MISSING discriminator with STATE_MD_MISSING_
MESSAGE constant.

VERIFICATION
  • init.test.cjs        — 93/93 pass (was 91/2 fail)
  • state.test.cjs       — 104/104 pass (was 95/9 fail)
  • core.test.cjs        — pass
  • roadmap.test.cjs     — pass
  • cjs-sdk-bridge-integration.test.cjs — 4/4 pass (bridge load locked in)

The 13 phase.test.cjs failures (next-decimal 999.x backlog skip, add-batch
JSON validation, insert dry-run rejection, find-phase non-canonical
warnings) are pre-existing SDK gaps from the broken-bridge era and will be
addressed in a follow-up commit on this same PR.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(3575): align SDK phase handlers with CJS (wave 2 — phase.test.cjs)

The bridge-fix (0fc60b0c) exposed 13 more CJS↔SDK behavioral divergences
inside the phase command family. All are now aligned to the canonical CJS
contract, with per-test verification.

phase.ts:
  • Centralised isCanonicalPlanFile / looksLikePlanFile / describeNonCanonical
    Plans helpers mirroring phase.cjs:17–52. Exported for reuse from
    phase-lifecycle.ts (phasesList) so the warning shape never drifts between
    read sites.
  • searchPhaseInDir now emits result.warning (singular) with the canonical
    message when a plan-shaped file would be skipped by the canonical filter.
    Bug #2893 parity for find-phase.
  • phasePlanIndex moved its non-canonical warning to the singular result.warning
    field (was a generic entry in result.warnings) so consumers see the same
    field name and message format as find-phase / phases-list. Other
    diagnostics (unresolved deps, wave-declaration mismatches) still flow
    through the warnings array unchanged.
  • Added PhaseInfo.warning to the type. getPhaseFileStats now also returns
    allFiles so the caller can compute the diagnostic without re-reading the
    directory.

phase-lifecycle.ts:
  • phasesList (phases list --type plans) emits per-dir prefixed warnings
    matching phase.cjs:120 (`${dir}: ${describeNonCanonicalPlans(...)}`).
  • phaseAdd now matches the CJS router contract for arg parsing:
    accepts --raw (ignored), --dry-run, --id <value>; rejects every other
    --flag with "phase add does not support <flag>"; rejects dangling
    --id with "--id requires a value"; joins all positional tokens with
    space so `phase add User Dashboard` produces description "User
    Dashboard". customId comes from --id, never from positional[1].
  • phaseInsert now mirrors phaseAdd's arg parsing: rejects --dry-run
    with "does not support --dry-run", strips --raw, joins
    positional.slice(1) for the description. Also reports the bug-3098
    placeholder error ("Phase N exists in roadmap summary but is missing
    a detail section") when the ROADMAP has only a checklist entry but no
    detail section.
  • phaseAddBatch dangling --descriptions or --descriptions followed by
    another flag now surface "--descriptions must be a JSON array"
    instead of silently falling through to positional parsing or throwing
    "--descriptions must be a valid JSON array".
  • renameIntegerPhases now skips backlog phases (dirInt >= 999) — bug-2434
    parity. Without this, removing phase 3 in a project with 999.1-backlog-*
    on disk would rename the backlog dir to 998.1-backlog-*.
  • updateRoadmapAfterPhaseRemoval rewritten to mirror phase.cjs:880-922
    exactly: 5 targeted regex passes (not a loop), driven by three
    decrement helpers (decrementRoadmapPhaseNumber, decrementRoadmapPhase
    Token, decrementRoadmapPaddedPhaseNumber) that guard against
    `num >= 999`. The padded-prefix replace uses negative lookbehind/
    lookahead to skip YYYY-MM-DD substrings. Fixes:
      - bug-2435: integer phase remove no longer corrupts dates in ROADMAP
        (e.g. `(Shipped: 2025-04-15)` is left alone when removing phase 4).
      - bug-3355: integer phase remove no longer renumbers the same phase
        more than once (loop overlap removed).
      - Backlog phases stay frozen during renumbering.
  • phaseComplete next-phase scan skips backlog dirs (999.x). Without
    this, `phase complete 2` in a project with 999.1-backlog/ on disk
    would emit next_phase: '999.1' even though Phase 3 exists in
    ROADMAP.md. Bug #2129 parity.

VERIFICATION (per-test, targeted runs — full suite not exercised due to
prior 89GB OOM with concurrent runs):
  • phase.test.cjs        — 108/108 pass (was 13 fail)
  • init.test.cjs         — 93/93 pass (no regression)
  • state.test.cjs        — 104/104 pass (no regression)
  • validate.test.cjs     — pass (no regression)
  • verify.test.cjs       — pass (no regression)
  • core.test.cjs         — pass (no regression)
  • roadmap.test.cjs      — pass (no regression)
  • cjs-sdk-bridge-integration.test.cjs — 4/4 pass (bridge intact)

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(3575): align SDK roadmap-mutation helpers with CJS — bug-2005

Three CJS↔SDK divergences in the phase.complete write path were hiding
behind the broken bridge:

1. replaceInCurrentMilestone (sdk/src/query/phase-roadmap-mutation.ts)
   The SDK port carried an extra fallback that doesn't exist in the CJS
   (core.cjs:1013-1022): if the "after last </details>" slice didn't match
   the pattern, the SDK silently retried inside the last <details> block.
   That fallback corrupts the current milestone when it is itself wrapped
   in <details open>...</details> and there's no content after the close
   tag — the supposed-to-be-skipped scope is the only place the match
   exists. Aligned to CJS: split at the last </details>, replace only in
   the after-slice, return. No fallback. Documented with a "do not
   re-add" warning since this fallback has been added back twice in
   prior porting passes.

2. phase complete checkbox update (sdk/src/query/phase-lifecycle.ts)
   The SDK was scoping the `- [ ] Phase N:` → `- [x] Phase N:`
   replacement through replaceInCurrentMilestone. The CJS
   (phase.cjs:1057) uses a direct roadmapContent.replace(...) call. When
   the current milestone is wrapped in <details>, the scoped variant
   never reaches the checkbox; direct replace finds it. Aligned with
   CJS.

3. phase complete plan-count update (sdk/src/query/phase-lifecycle.ts)
   Same pattern — the SDK was scoping the `**Plans:** X/Y` update
   through replaceInCurrentMilestone. CJS (phase.cjs:1080) uses direct
   replace. Aligned.

VERIFICATION
  • bug-2005-phase-complete-details.test.cjs — 2/2 pass (was 1 fail)
  • phase.test.cjs                            — 108/108 pass (no regression)

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(3575): align SDK with CJS — add-decision DWIM + frontmatter paths

Two more CJS↔SDK divergences exposed by the bridge fix:

state.add-decision / state.add-blocker DWIM (sdk/src/query/state-mutation.ts)
  CJS state.cjs:481-498 + 532-548 auto-create the canonical Decisions /
  Blockers section when it's absent from STATE.md. The SDK was returning
  `{added: false, reason: '<Section> section not found in STATE.md'}`
  even when STATE.md was writable. Bug #3286 (parity for both verbs):

    • If section header pattern matches → append entry (existing path).
    • If section is absent → scaffold `## Decisions` (or `### Blockers`)
      and append the entry, then set `created: true` on the result.

  Matches the begin-phase / advance-plan DWIM behavior. Callers can now
  treat `state add-decision` as idempotent — first call creates the
  scaffold, subsequent calls append to it.

frontmatter get/set/merge/validate (helpers.ts + frontmatter.ts +
                                     frontmatter-mutation.ts)
  CJS frontmatter.cjs:323/340/354/369 resolves user paths with the
  simple `path.isAbsolute(p) ? p : path.join(cwd, p)`. The SDK port had
  promoted this to `resolvePathUnderProject` which adds a real-path
  prefix check against the project root.

  That check rejects absolute paths outside the project — including
  macOS tmpdir paths whose names contain spaces, the exact regression
  cited in bug #3509. Frontmatter verbs are deliberately path-flexible
  in CJS because they're called against external files (plan paths
  from other repos, scratch markdown, tmpdir fixtures).

  Introduced `resolveFrontmatterPath()` mirroring the CJS one-liner. The
  project-scoped `resolvePathUnderProject()` is unchanged — still used
  for template output, decision artifacts, etc.

VERIFICATION
  • bug-3286-state-write-routing.test.cjs — 13/13 pass (was 6 fail)
  • bug-3509-path-spaces.test.cjs         — 6/6 pass (was 3 fail)
  • phase.test.cjs / init.test.cjs / state.test.cjs / validate.test.cjs /
    verify.test.cjs / core.test.cjs / roadmap.test.cjs — all pass (no
    regression — 566 total tests).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(3575): route SDK state handlers through scanPhasePlans — bug-3257

The SDK port of buildStateFrontmatter / stateValidate / stateSync was
using a naive top-level filter (`files.filter(/-PLAN\.md$/i)`) instead
of the canonical scanPhasePlans helper. The naive filter undercounts
every phase that uses the nested layout `phases/NN-name/plans/<NN>-PLAN-MM-slug.md`,
which is the default the planner agent produces.

CJS routes all three sites through scanPhasePlans (state.cjs:408, 824,
1427). scanPhasePlans is already a Shared Module — generated CJS at
plan-scan.generated.cjs from sdk/src/query/plan-scan.ts. The fix is
just to consume it.

CHANGES
  • buildStateFrontmatter (sdk/src/query/state.ts): replaced the
    inline `-PLAN.md` / `-SUMMARY.md` regex filters with scanPhasePlans;
    use the helper's `completed` flag for diskCompletedPhases.
  • stateValidate (sdk/src/query/state-mutation.ts): same swap on the
    current-phase plan-count drift check.
  • stateSync (sdk/src/query/state-mutation.ts): same swap on the
    rollup loop. Also routes the Progress percent through
    computeProgressPercent(completedPlans, totalPlans, diskCompletedPhases,
    syncTotalPhases) so the min(plan_fraction, phase_fraction) cap from
    bug #3242 Bug B is applied — without this, sync emitted 60% when the
    real progress was capped at 50% by phase-fraction.

VERIFICATION
  • bug-3257-nested-plans-undercount.test.cjs — 14/14 pass (was 12 fail)
  • phase.test.cjs / init.test.cjs / state.test.cjs / validate.test.cjs /
    verify.test.cjs / core.test.cjs / roadmap.test.cjs / bug-3286 /
    bug-2005 / bug-3509 — all pass (no regression — 580 total).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* test(3575): phase 6 CJS↔SDK seam behavioral contracts — TDD-found worker bug

Adds tests/phase-6-cjs-sdk-seam-contracts.test.cjs — a behavioral contract
suite for everything Phase 6 of #3524 introduced.  Written under the
issue #3592 test rewrite discipline:

  • No source-grep on .cjs files
  • No assert.match / .includes on free-form child-process stdout/stderr
  • Every assertion is on a parsed JSON object, a filesystem fact, an
    exit code, or a frozen enum value (SYNC_ERROR_KIND, BRIDGE_EXPORTS,
    TRANSPORT_MODE)
  • Helpers come from tests/helpers.cjs (runGsdTools, createTempProject,
    cleanup) — no inline fs.mkdtempSync
  • Fixture content built with array.join('\n'), never template literals
  • beforeEach/afterEach for shared setup; no try/finally inside tests

COVERAGE
  1. Bridge module surface — exports lock against BRIDGE_EXPORTS
  2. Bridge load lifecycle — tryLoadSdk, getters return cached refs,
     pre-load returns null
  3. executeForCjs RuntimeBridgeSyncResult shape — ok:true vs ok:false
     discriminated union; mode:"json" never double-stringifies
  4. CLI family-router dispatch — one structured-JSON assertion per
     family (roadmap, phase, phases, state, init, validate, find-phase)
  5. mode:"json" regression guard — stdout parses to object, not to
     JSON-encoded string (the Wave-1 double-stringify bug shape)
  6. GSD_WORKSTREAM gate — SDK path and CJS fallback produce identical
     structured fields for the same fixture
  7. Validation error taxonomy — empty arg → ok:false +
     errorKind: SYNC_ERROR_KIND.VALIDATION_ERROR
  8. phase.add filesystem facts — directory exists, ROADMAP file grew
     (asserted via fs.statSync, never by reading content back)

TDD-FOUND BUG (RED → GREEN)
  Suite §7 (validation_error taxonomy) failed in the RED phase:

    expected: 'validation_error'
    actual:   'native_failure'

  Root cause in sdk/src/runtime-bridge-sync/worker.ts: when an SDK
  handler throws a GSDError(Validation), the native direct adapter
  wraps it in a GSDToolsError via createNativeFailureError, preserving
  the original on `.cause`.  classifyError only checked for TypeError
  causes — every GSDError cause fell through to `native_failure`,
  breaking the documented SyncErrorKind contract.

  Fix: classifyError now unwraps the cause once.  When the cause is a
  GSDError with ErrorClassification.Validation or .Blocked, the result
  is errorKind: 'validation_error' (exit 10) — matching the direct
  branch a few lines below for unwrapped GSDError.

VERIFICATION (per-test, before and after the worker fix)
  • Phase 6 contract suite          — 21/21 pass (was 20/1 fail at RED)
  • phase.test.cjs                  — 108/108 pass
  • init.test.cjs                   — 93/93 pass
  • state.test.cjs                  — 104/104 pass
  • validate.test.cjs / verify.test.cjs / core.test.cjs / roadmap.test.cjs
                                    — all pass
  • cjs-sdk-bridge-integration.test.cjs — 4/4 pass (bridge intact)
  • npm run lint:tests              — 0 violations (no source-grep)

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(3575): SDK config-get/set parity + reason-code propagation — bugs #2943 #3086 #3212

Three CJS↔SDK divergences in config dispatch exposed when Phase 6 routes
`config-get` / `config-set` through `executeForCjs`:

1. SDK config-get was missing the SCHEMA_DEFAULTS map.
   CJS config.cjs:505-510 hard-codes documented defaults for
   `context_window` (200000), `executor.stall_detect_interval_minutes` (5),
   `executor.stall_threshold_minutes` (10), `git.create_tag` (true).  When a
   config.json omits the key, CJS returns the documented default with
   exit 0.  SDK threw `Key not found` for all four — every skill that
   reads `context_window`, executor stall thresholds, or the tag toggle
   broke under SDK dispatch.  Ported the table verbatim into
   sdk/src/query/config-query.ts and consult it at every "not found"
   exit point (matching the three CJS branches: missing file, traversal
   collapse, terminal undefined).

2. SDK config-set was missing the `git.create_tag` boolean-only guard.
   CJS rejects `config-set git.create_tag maybe` because the schema is
   boolean.  SDK silently accepted it and wrote "maybe" to disk under
   Phase 6 dispatch.  Added the matching guard + the missing
   `workflow.post_planning_gaps` boolean guard.

3. SDK errors lost their structured reason code at the bridge boundary.
   `--json-errors` callers expect `reason: 'config_key_not_found'` etc.
   from a frozen `ERROR_REASON` taxonomy; the bridge dispatcher in
   gsd-tools.cjs was calling `error(message)` without the second
   argument, so every SDK-routed error surfaced as `reason: 'unknown'`.
   Fix is end-to-end:
     • config handlers tag the GSDError with `.reason = 'config_*'`.
     • worker.ts:classifyError reads `.reason` off the cause (or off
       the direct error) and forwards it via `errorDetails.reason`.
     • `_dispatchNonFamily` in gsd-tools.cjs passes that reason as the
       second arg to `error()` when present.
     • Also added the `--raw` scalar pass-through here, so
       `output(data, raw, String(data))` is called for primitive
       results — without it, `config-get context_window --raw` emitted
       the JSON shape '200000\n' which happens to match but breaks any
       primitive whose JSON encoding differs from its String() form
       (booleans for example, where the CJS produces `true` while the
       SDK-routed path was producing `true` — same here, but the
       structural guarantee was wrong before).

VERIFICATION (per-test)
  • bug-2943-config-get-context-window-default.test.cjs — 5/5 pass
  • bug-3086-git-create-tag-config-gate.test.cjs        — 4/4 pass
  • bug-3212-execute-phase-stall-safe-resume.test.cjs   — 7/7 pass
  • Phase 6 contract suite                              — 21/21 pass
  • phase/init/state/core/roadmap/validate/verify       — all pass
                                                          (570 total)
  • Full bug-* suite: 24 fail → 17 fail (7 fixed in this commit).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(3575): SDK milestone-archive layout discovery — bug #3164

Two CJS↔SDK divergences in phase discovery and validation surfaced
when projects moved to the milestone-archive layout
(`.planning/milestones/v<version>-phases/<phase>/`) instead of the
flat `.planning/phases/<phase>/`.

1. SDK findPhase had no `searched_directories` field on the not-found
   payload.  CJS surfaces this for diagnostics.  Added: track every
   directory probed (the active `.planning/phases/` plus each
   archive root) and include the relative paths in the not-found
   payload. Bug #3164 — #find-phase tests.

2. SDK validateConsistency only scanned `.planning/phases/`.  CJS
   `cmdValidateConsistency` (verify.cjs:467) walks every active
   phase root via `collectPhaseRoots(planBase)` — the flat dir plus
   the active milestone archive resolved from STATE.md.  Without
   parity, every roadmap phase on a milestone-archive-layout project
   emitted W006 ("no directory on disk") even though the phases were
   present in the archive.

   Ported the helper trio (listMilestoneArchiveDirs,
   getActiveMilestoneArchiveDir, collectPhaseRoots) verbatim from
   verify.cjs:400-444 and rewrote validateConsistency's disk-phase
   scan + per-phase plan scan to iterate `phaseRoots`.  Warning
   labels now include the archive prefix so users can tell which
   root surfaced the issue.

   Also accepts prefixed archive dir names (`CK-64-...`) as phase 64
   via the `(?:[A-Z]{1,6}-)?` group at the head of
   PHASE_TOKEN_FROM_DIR_RE — same regex CJS uses.

VERIFICATION (per-test)
  • bug-3164-milestone-archive-layout.test.cjs — 8/8 pass
  • Phase 6 contract suite                      — 21/21 pass
  • phase/init/state/validate/verify/core/roadmap — 570 pass
  • Full bug-* suite: 17 fail → 12 fail (5 fixed in this commit;
    cumulative 12 fixed since Wave 6 start).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(3575): padded phase IDs match unpadded ROADMAP prose — bug #3537

Three failures in bug-3537-padded-id-against-unpadded-roadmap:

1. roadmap.get-phase returned `phase_number` verbatim from the user
   input — `02.7` produced `"phase_number": "02.7"` while `2.7`
   produced `"phase_number": "2.7"` on the same fixture, so a parity
   compare of the two stdouts fails.  Fixed by promoting the matched
   phase token in `searchPhaseInContent` to a capture group and
   returning that as the canonical `phase_number`.  Same fix in the
   checklist-fallback branch so the malformed-roadmap diagnostic
   carries the as-written form too.

2. phase.complete built every ROADMAP-prose regex from
   `escapeRegex(phaseNum)` instead of the padding-tolerant
   `phaseMarkdownRegexSource(phaseNum)`.  Calling
   `phase complete 02.7` against the un-padded heading
   `### Phase 2.7:` matched nothing — checkbox didn't flip, plan
   count stayed at `0/1`, table row stayed `Planned`.  Promoted
   `phaseMarkdownRegexSource` to an exported helper in roadmap.ts
   and wired it into phaseComplete's roadmap mutation block.

3. roadmap.annotate-dependencies infinite-looped through the bridge.
   The SDK handler delegates to `spawnSync(gsd-tools.cjs roadmap
   annotate-dependencies …)`; the child re-entered the roadmap
   router; the router re-dispatched through executeForCjs; synckit
   spawned the same SDK worker; that worker spawned gsd-tools.cjs
   again; …  Recursion hit the 15s timeout and the test reported
   `code=null`.  Fixed with a `GSD_SDK_NESTED=1` env-var guard:
   the SDK handler sets it when spawning the child, and the CJS
   roadmap router refuses SDK dispatch when it sees the flag.

VERIFICATION (per-test)
  • bug-3537-padded-id-against-unpadded-roadmap.test.cjs — 6/6 pass
  • Phase 6 contract suite                                — 21/21 pass
  • phase/init/state/validate/verify/core/roadmap         — 570 pass
  • Full bug-* suite: 12 fail → 7 fail (5 fixed in this commit;
    cumulative 17 fixed across the wave-6/7/8 sequence).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(3575): final-7 SDK parity — bugs #2787 #2268 #2526

Closes out the bug-suite tail.  Three independent fixes against three
independent regressions surfaced when Phase 6 routed read-only and
mutation paths through the SDK.

1. extractCurrentMilestone truncated at heading-like lines inside
   fenced code blocks — bug #2787.  The `^#{1,N}\\s+...vX.Y` scan
   ran with the `/m` flag, which matches `^` at every newline,
   including newlines inside ``` and ~~~ fences.  A snippet like
     ```bash
     # Ops runbook — v1.0 compat
     ```
   placed between Phase 2 and Phase 3 of a v1.1 milestone shortened
   the milestone slice and made phases 3, 4 invisible to
   roadmap.analyze / roadmap.get-phase.

   Added `isInsideFencedCodeBlock(content, offset)` — a GFM-aware
   walker that toggles a `fenceChar` cursor on each fence boundary
   (backticks and tildes; closing fences require the matching
   character and no info string — so ```js inside ```text does NOT
   close).  The nextMilestoneRegex loop now skips any match that
   falls inside an open fence.

2. init.manager only marked the FIRST undiscussed phase as
   `is_next_to_discuss` — bug #2268.  Two and five-phase fixtures
   both proved the regression: parallel-discuss capacity was lost,
   recommended_actions emitted at most one discuss action even
   when callers were free to take several.  Replaced the sliding-
   window loop with an unconditional `phase.is_next_to_discuss =
   (status === 'empty' || status === 'no_directory')`.

3. phase.complete didn't surface "REQ-IDs found in body but
   missing from Traceability table" warnings — bug #2526.  CJS
   phase.cjs:1140-1167 scans REQUIREMENTS.md for `**REQ-ID**`
   references in the body, intersects against the IDs that actually
   appear in the Traceability section table, and warns about the
   diff.  The SDK port only ran the per-roadmap-REQ checkbox
   update and never emitted the body-scan warning.  Added the
   missing scan + warning push; also routed the writeFile through a
   `reqContentChanged` flag so we only write when at least one
   substitution actually fired (parity with the implicit
   "every checkbox already complete" no-write CJS branch).

VERIFICATION
  • bug-2787-milestone-fenced-block-truncation.test.cjs — 4/4 pass
  • bug-2268-parallel-discuss.test.cjs                   — 4/4 pass
  • bug-2526-phase-complete-req-discovery.test.cjs       — 3/3 pass
  • Phase 6 contract suite                               — 21/21 pass
  • Major suites (phase/init/state/validate/verify/core/roadmap) — 570 pass
  • **Full bug-* suite: 2397/2397 pass — ZERO failures.**
  • Combined run (major + bug-*): 2967/2967 pass — zero failures.

Cumulative since the bridge-fix landing (PR #3577): 12 sub-test
regressions surfaced + every one resolved.  Phase 6 is now byte-for-
byte CJS-parity across every command family verified by the test
suite.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(3575): preserve codex runtime command shape after router migration

* test(3575): pin agent-install-validation init tests to GSD_AGENTS_DIR

PR #3577 routed init.execute-phase and init.plan-phase through executeForCjs
to the SDK handlers. The SDK side's resolveAgentsDir (sdk/src/query/helpers.ts)
honors GSD_AGENTS_DIR or falls back to <runtimeConfigDir>/agents; it does not
walk up from cwd to find <repo>/agents/ like the CJS-era code did. The two
init-suite tests that asserted agents_installed=true relied on that implicit
walk and only passed on dev machines where ~/.claude/agents/ already had the
33 agents installed — Linux CI runners have neither.

Match the pattern every passing sibling in this file already uses: pass
{ GSD_AGENTS_DIR: REPO_AGENTS_DIR } through runGsdTools so the SDK resolver
points at the repo's agents/ dir explicitly. No production code change.

Refs sdk/src/query/QUERY-HANDLERS.md ("subprocess vs in-process path
resolution") and CONTEXT.md DEFECT.PORT-DRIFT.cjs-sdk.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(3577): Phase 6 config-* SDK port parity carve-outs

Restored the legacy contract for four CLI tests broken by the Phase 6
router migration:

1. `config-ensure-section` was bound to the new SDK `configEnsureSection`
   handler which requires `args[0]=sectionName`. Every real CLI caller
   uses the no-arg form expecting full default config.json creation.
   Reverted the dispatch case to call `config.cmdConfigEnsureSection`
   directly (matches the precedent in 7d5dfa9d for `codex` runtime).

2. SDK `configNewProject` `commit_docs` and `parallelization` defaults
   set to `true`/`true` (was `false`/`1`) — aligned with
   `sdk/shared/config-defaults.manifest.json` and the CJS
   `buildNewProjectConfig` `hardcoded` block.

3. SDK `configNewProject` returns the project-rooted relative path
   `.planning/config.json` instead of the absolute `paths.config`,
   matching the CJS `ensureConfigFile` output shape.

4. SDK error vocabulary aligned with CJS: `Unknown config key: <key>`
   (no surrounding quotes), and config-get's malformed-JSON message
   leads with `Failed to read config.json:` so legacy substring
   assertions in `tests/config.test.cjs` keep matching.

Local: 132/132 across `tests/{config,agent-skills,ai-evals}.test.cjs`.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(3631): family routers forward --raw to SDK bridge as mode:'raw'

#3577 routed every family subcommand through the SDK bridge with a
hardcoded mode:'json'. With --raw set, the bridge returned the typed JSON
IR and routers called `output(result.data)` — bypassing output()'s
rawValue branch. Shell consumers expecting scalar tokens
(`gsd-tools phase next-decimal --raw 1` → `1.1`) received the JSON-
stringified IR instead.

Each `*-command-router.cjs` SDK dispatch path now requests
`mode: raw ? 'raw' : 'json'` from the bridge. The sync-bridge worker is
wired to `formatNativeRaw = formatQueryRawOutput` so the bridge returns
the per-command scalar projection. Routers route the formatted string
through `output(null, true, str)` (rawValue branch) so it lands on
stdout verbatim.

formatQueryRawOutput extended for the two commands covered by the issue
acceptance criteria — phase.next-decimal (→ data.next) and
roadmap.get-phase (→ data.section). Other registered raw projections
(state.load, commit, config-set, state.begin-phase) are unaffected; the
default `safeStringify` branch still applies to unprojected commands.

state-command-router already had a dispatchViaSdk helper that selected
mode based on a rawFormatter. The trailing fallthrough `output(result.data)`
when no rawFormatter was present is the same regression and was patched
to use the rawValue branch under --raw.

Regression test `tests/bug-3631-router-raw-flag.test.cjs` exercises
end-to-end:
  - `phase next-decimal --raw 1` emits a scalar phase token (not JSON).
  - `roadmap get-phase --raw 2` emits the section text (not JSON).

The fix targets `feat/3575-enforcement-hardening` (PR #3577, open) —
not origin/main as the issue body asserted. The #3577 regression lives
on that branch and the fix needs to land there before merge.

Fixes #3631

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* test(3631): force CJS dispatch path in router unit tests via GSD_WORKSTREAM

phases-command-router.test.cjs and roadmap-command-router.test.cjs
mock the CJS-side `phase`/`milestone`/`roadmap` handlers and assert
they are called with the parsed args. Since #3577 the router prefers
SDK dispatch when sdk/dist is present — the mocks are then bypassed
and the SDK side fails because the test cwd `/tmp/proj` has no
`.planning/` fixture.

The router already gates SDK dispatch on `process.env.GSD_WORKSTREAM`
being unset (workstream-scoped requests fall through to CJS). Setting
GSD_WORKSTREAM in before()/after() deterministically routes through
the CJS handlers the tests were written against, without weakening
the assertions.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(3632): report each ts sibling independently in lint-shared-module-handsync

The cooperatingPairs lookup ran inside `.some()` over all ts candidates for
a given cjs. When two ts siblings shared the same basename (e.g.
`sdk/src/foo.ts` and `sdk/src/query/foo.ts`) and only one pair was
allowlisted, `.some()` short-circuited and the unallowlisted sibling
silently passed through CI.

Classify each ts sibling independently against the allowlist so partially-
allowlisted multi-sibling drift surfaces. Added regression test
`reports unallowlisted ts sibling when another ts sibling for the same cjs
IS allowlisted (#3632)`.

Real-tree lint output unchanged on `feat/3575-enforcement-hardening`:
22 cooperating siblings, 0 unauthorized, 0 backlog pairs.

Fixes #3632

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(3577): ADR/PRD compliance + SDK port completeness for Phase 6

Multiple ADR/PRD violations in the Phase 6 cutover surfaced during
gsd-test-summary docker runs. Root causes traced to docs/adr/
3524-cjs-sdk-hard-seam.md §3 (out-of-seam module list) and
docs/prd/3524-cjs-sdk-hard-seam.md L160 (CJS-only verbs must not
route through the SDK runtime bridge), plus port-drift bugs the ADR
was specifically written to prevent (DEFECT.PORT-DRIFT.cjs-sdk).

Out-of-seam Module bindings removed from SDK catalog/manifests:
- verify.codebase-drift (drift is CJS-only; the SDK stub used
  execFileSync back to gsd-tools, recursing infinitely with the
  Phase 6 router rewrite — forked hundreds of node procs on the
  64 GiB plex2 docker host before manual kill)
- intel.* (8 verbs: diff, snapshot, validate, status, query,
  extract-exports, patch-meta, update — intel is CJS-only per ADR)
Both already have direct-CJS dispatch in gsd-tools.cjs (case
'intel') and verify-command-router.cjs (`'codebase-drift':` now
calls verify.cmdVerifyCodebaseDrift without going via sdkHandler).

config-ensure-section cutover restored via catalog rebind:
- 'config-ensure-section' in command-static-catalog-foundation.ts
  rebound from configEnsureSection (single-section semantics,
  requires args[0]=sectionName the CLI never passes) to
  configNewProject (whose no-args branch produces the full default
  config.json — matches the legacy ensureConfigFile contract).
- gsd-tools.cjs `case 'config-ensure-section'` restored to its
  Phase 6 _dispatchNonFamily form (no CJS fallback — the SDK
  handler now does the right thing).

configNewProject defaults from canonical manifest:
- Replaced the hardcoded duplicate `defaults` block with a
  derivation from CONFIG_DEFAULTS (sdk/src/configuration/index.ts,
  sourced from sdk/shared/config-defaults.manifest.json). The
  duplicate had drifted — omitted workflow.{ai_integration_phase,
  tdd_mode, human_verify_mode, pattern_mapper, plan_bounce*,
  auto_prune_state, subagent_timeout, security_*, post_planning_gaps},
  git.create_tag, claude_md_path, planning.*, graphify.*, mode,
  resolve_model_ids, context_window — every one of which had a
  test asserting the post-init value.

SDK configSet value-validation port (CJS cmdConfigSet parity):
- workflow.drift_action enum (warn|auto-remap)
- workflow.drift_threshold positive-integer
- workflow.human_verify_mode enum (mid-flight|end-of-phase)
- statusline.context_position enum (front|end)
- code_quality.fallow.scope enum (phase|repo)
- code_quality.fallow.profile enum (minimal|standard|strict)
- review.default_reviewers array shape + slug regex +
  lowercase-unique normalisation (matches
  bin/lib/review-reviewer-selection.cjs
  normalizeConfiguredDefaultReviewers, with the normalised value
  persisted to disk)

Init/roadmap/phase/workspace/frontmatter handler fixes:
- initExecutePhase + initPlanPhase parse --tdd boolean override
- initMapCodebase reads workflow.subagent_timeout with 300000
  default per manifest
- roadmapAnalyze surfaces `mode` per phase (parity with
  roadmapGetPhase)
- phaseComplete auto-prunes STATE.md when workflow.auto_prune_state
  is true (port of bin/lib/phase.cjs:1378-1390; #2087)
- initRemoveWorkspace throws GSDError on no-name and
  workspace-not-found instead of returning {data:{error}} which
  the CLI output path treated as success
- frontmatterGet parses --field <name> in addition to positional
  args[1]

Local: 150/150 across the failing-cluster test files
(review-default-reviewers-config, subagent-timeout, pattern-mapper,
tdd-mode, drift-detection, roadmap-mode-field, workspace,
phase-complete-auto-prune, frontmatter-cli). Docker gsd-test-summary
re-run in progress for full validation.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(3577): clear 12 ubuntu-only regressions surfaced by gsd-test-summary

Docker test pass 3 (holodeck) surfaced 12 real bugs after the earlier
ADR/PRD-compliance commit (cf4dd0cb). Every one is a SDK-side bug —
fix-forward, not "pre-existing":

bug-3599 (2 subtests) — roadmap.get-phase project-code-prefix lookup:
  Ported phaseMarkdownRegexSourceExact from CJS (core.cjs:704-708) so
  `PROJ-42` queries try the exact escaped form FIRST before falling
  back to the padding-tolerant numeric. searchPhaseInContent now does
  two-pass lookup. Without this, `roadmap get-phase PROJ-42` returned
  not-found even when ROADMAP contains `### Phase PROJ-42:`, and
  bare `42` queries cross-matched the PROJ-42 heading.

roadmap-mode-field (1) — roadmapAnalyze surfaces `mode` per phase:
  Extracts the same `**Mode:**` field that roadmapGetPhase already
  parses (CONTEXT.md "MVP Mode" glossary). Without this, downstream
  consumers reading roadmap.analyze output couldn't tell which phases
  were MVP-mode.

bug-3601 (2 subtests) — phase.remove preserves peer-depth decimals:
  Ported the depth-aware end-of-section regex from CJS phase.cjs
  (named capture `(?<h>#{2,4})` + `\k<h>(?!#)` backreference). Now
  removing `### Phase 2:` stops at `### Phase 2.1:` (same depth, peer
  decimal) while continuing past `#### Phase 27.1:` (child depth).

bug-3602 (1 subtest) — phase.remove renumbers slugged plan refs:
  Extended the padded-plan-reference pattern with optional kebab-case
  slug segments `(?:-[A-Za-z][A-Za-z0-9-]*)*` between NN-NN and the
  PLAN/SUMMARY suffix, matching CJS phase.cjs:#3602 fix. Without this,
  `07-01-cherry-pick-foundation-PLAN.md` references stayed at `07-01-`
  after Phase 7 was removed, while the file on disk was already
  `06-01-...`.

config.test (1) — config-get git.base_branch returns "Key not found":
  configNewProject now filters out manifest keys legacy CJS init does
  NOT materialize: top-level `resolve_model_ids`, `context_window`,
  `mode`, `planning`, `graphify`; nested `git.base_branch`. These have
  their own resolution paths (origin/HEAD auto-detect for base_branch,
  feature opt-in for planning/graphify) and materializing the manifest
  defaults would suppress them. Manifest stays the schema source of
  truth per ADR §6; init shape stays minimal per legacy CJS contract.

gsd-sdk-query-registry-integration (1) — agents/gsd-intel-updater.md
references retargeted from `gsd-sdk query intel.*` to `gsd-tools intel
<subcommand>`. intel is out-of-seam per ADR §3 / PRD L160 ("CJS-only
Module handlers ... keep their in-process CJS implementations").
Removing the SDK catalog entries (cf4dd0cb) made the SDK route invalid;
the agent now correctly invokes the CJS handler via gsd-tools, which
routes through Shell Command Projection for cross-platform formatting.

Local: 79/79 across the failing test files. Docker re-run in progress.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(3577): regenerate command-aliases + retarget workflow drift-gate

CI ubuntu-24 surfaced two remaining ADR-compliance gaps after the
previous push:

1. `sdk/src/query/command-aliases.generated.{ts,cjs}` still listed
   verify.codebase-drift + intel.{snapshot,patch-meta} from before the
   manifest-side removal. Ran `npx tsx sdk/scripts/gen-command-aliases.ts`
   to regenerate; both files now match the manifest source of truth.
   Closes the `command-seam-coverage.test.ts` "missing registry
   canonical verify.codebase-drift" failure (its assertion is correct —
   the SDK does NOT register codebase-drift, so the alias entry must
   not be present either).

2. `get-shit-done/workflows/execute-phase/steps/codebase-drift-gate.md`
   invoked `gsd-sdk query verify.codebase-drift` — drift is out-of-seam
   (CJS-only) per ADR §3 / PRD L160, so there is no SDK handler to
   route through. Retargeted to `gsd-tools verify codebase-drift` which
   dispatches direct to bin/lib/drift.cjs (the canonical implementation)
   via the CJS router. Closes the
   `gsd-sdk-query-registry-integration.test.cjs` failure.

Local: docker gsd-test-summary 11383/0 on plex2.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(3575): raise Node heap for coverage in CI matrix

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Co-authored-by: ci <ci@gsd-build>
 2026-05-16 13:14:24 -04:00
Tom Boucher
c638665d59 fix(3569): surface phase_status from init.plan-phase; gate /gsd:plan-phase on closed phases (re-submit of #3578) (#3581) 
* fix(3569): surface phase_status from init.plan-phase + gate /gsd:plan-phase on closed phases

Adds a new `phase_status` field to the `init.plan-phase` SDK + CJS query
output and a §1.5 "Closed-Phase Gate" in workflows/plan-phase.md that
short-circuits on closed phases instead of silently replanning over
shipped code.

`gsd-sdk query init.plan-phase <N>` returned the same "ready to plan"
payload for a closed phase (REQUIREMENTS Met, VERIFICATION.md status:
passed, ROADMAP flipped) as for an open one. No field signaled closure,
so `/gsd:plan-phase --reviews` happily replanned over closed phases —
risking documentation drift on already-shipped code.

- Export `determinePhaseStatus` from `commands.cjs` (already present, was
  module-private).
- Both `cmdInitPlanPhase` (CJS) and `initPlanPhase` (TS SDK) now compute
  `phase_status` from plan/summary counts + VERIFICATION.md status using
  the existing `determinePhaseStatus` helper — the project-wide phase
  lifecycle vocabulary (Pending | Planned | In Progress | Executed |
  Complete | Needs Review). No directory yet → Pending.
- Workflow `plan-phase.md` adds §1.5 "Closed-Phase Gate":
  - `phase_status == "Complete"` with `--reviews` → hard-stop, no
    override (replanning a closed phase via review feedback is never
    legitimate; concerns belong in a follow-up phase or new issue).
  - `phase_status == "Complete"` without `--force` → exit with a clear
    notice pointing at VERIFICATION.md.
  - `phase_status == "Complete"` with `--force` → continue with a
    transcript banner so the deliberate replan is visible.

`Executed` and `Needs Review` are intentionally not gated — those mean
planning finished but verification did not pass, and replanning is the
correct next step.

- SDK: 4 new `phase_status` cases in init.test.ts covering Pending /
  Planned / Executed / Complete transitions.
- Existing init.plan-phase golden parity test continues to pass (the
  `researcher_model: '' vs sonnet` drift in that test predates this
  change and is unrelated).
- Full Mac+Docker suite: 9323 / 9323 passed (Mac), 9318 / 9323 passed
  (Docker, 5 skipped).

Fixes #3569

* chore(3569): add changeset fragment for PR #3581

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
 2026-05-16 13:14:21 -04:00
Tom Boucher
cfbdf5f832 fix(3643): resolve full Claude model id under resolve_model_ids: true (#3648) 
* fix(3643): resolve full Claude model id under resolve_model_ids: true

The SDK resolveModel handler bailed out of resolveRuntimeTier for
runtime: "claude" (config-query.ts:149) — the implicit/default runtime —
and fell through to return { model: alias } without consulting the
catalog when resolve_model_ids: true. Consumers received tier aliases
("opus" / "sonnet" / "haiku") instead of the full IDs the CJS resolver
produces (core.cjs:1348-1350 maps via MODEL_ALIAS_MAP).

Added a runtime === 'claude' && resolveModelIds === true branch that
calls resolveRuntimeTierDefault('claude', tier) from the shared
model-catalog so SDK and CJS paths derive Claude IDs from one source
of truth. model_overrides, phase-type tier override, and
resolve_model_ids: "omit" precedence unchanged.

7 new tests in sdk/src/query/config-query.test.ts cover:
- claude + resolve_model_ids:true × {budget, balanced, quality}
  × {gsd-executor, gsd-planner} → full Claude IDs
- claude + phase-type override → opus full id
- claude WITHOUT resolve_model_ids → still returns alias (regression)
- claude + resolve_model_ids:"omit" → still wins
- model_overrides[agentType] → still wins

Fixes #3643

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* chore(3643): backfill changeset pr field with #3648

Per DEFECT.CHANGESET-PR-FIELD-DRIFT.fix-forward — the changeset was
authored with pr: 0 placeholder before the PR existed; now pinned to
the actual PR number.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(3643): resolve full Claude model id when runtime is implicit

CodeRabbit caught that the resolve_model_ids:true branch at
sdk/src/query/config-query.ts only matched explicit runtime === 'claude'.
The resolveRuntimeTier bail-out at line ~149 treats empty/missing
runtime as implicit Claude, so projects without an explicit runtime
field fell through to the alias return — leaving callers that asked
for resolved model IDs with the tier alias instead of the full id
(e.g. 'sonnet' instead of 'claude-sonnet-4-6').

isClaudeRuntime = runtime === '' || runtime === 'claude' covers both
the explicit and implicit cases.

Local: docker gsd-test-summary 11201/0 on plex2.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
 2026-05-16 13:14:12 -04:00
Tom Boucher
037a49c9c2 test(3593): CLI negative-matrix harness + config family + universal sweep (#3627) 
Adds the shared adversarial-input harness described in TEST-EXAMPLES.md
§"CLI Negative Matrix" and applies it across two layers:

  1. tests/helpers/cli-negative.cjs — runCli() wraps spawnSync of
     get-shit-done/bin/gsd-tools.cjs, prepends --json-errors by default,
     and returns a typed IR { status, ok, reason, message,
     hasStackTrace, ... } so adversarial-case tests assert on
     reason codes — never on stderr prose.

  2. tests/feat-3593-cli-negative-config.test.cjs — full 12-category
     matrix for the config command family (the highest-risk read/write
     surface): missing/empty/whitespace args, duplicate --cwd,
     unknown subcommand, value-looks-like-a-flag, corrupt config.json,
     50KB key, Unicode/emoji keys and values, and 9 distinct shell-
     metacharacter payloads asserted as NOT-executed via per-test
     sentinel-file probes.

  3. tests/feat-3593-cli-negative-universal.test.cjs — narrower
     cross-family sweep (phase, roadmap, state, config, workstream,
     init, validate). Pins the three universal invariants every
     family must satisfy: bare invocation does not crash with a V8
     stack trace, unknown subcommand emits a typed reason, and shell
     payloads as argv values are not executed.

  4. tests/feat-3593-cli-negative-harness.test.cjs — meta-test that
     pins the harness IR contract so a future regression in the
     parser (stack-trace detection, JSON shape extraction, hostile
     stderr handling) surfaces before it cascades through every
     matrix file.

Bug fix surfaced by the new tests:

  get-shit-done/bin/lib/config.cjs cmdConfigSet — invoking
  `config-set <key>` with no value silently returned exit 0 and
  emitted { updated: true } even though the value parameter was
  undefined. JSON.stringify dropped the key during the write or
  persisted a corrupt entry. Now rejected with typed ERROR_REASON.USAGE
  before any write. Matching guard added to SDK configSet for parity.

Harness coverage delivered: 58 new tests (9 meta + 26 config + 23
universal sweep). Pre-existing config suites (101 tests) all pass.
lint-no-source-grep clean.

Refs #3593

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
 2026-05-15 23:57:38 -04:00
Tom Boucher
2cf4c8e8ec Merge pull request #3611 from gsd-build/fix/3587-bug-security-check-ship-ready-shell-inje 
fix(3587)(security): argv-based subprocess for check.ship-ready
 2026-05-15 23:04:42 -04:00
Tom Boucher
8c46c3f1af Merge pull request #3622 from gsd-build/fix/3600-bug-init-new-milestone-counts-prefixed-p 
fix(3600): count project-code-prefixed phase dirs in milestone filter
 2026-05-15 23:04:20 -04:00
Tom Boucher
afb0692522 Merge pull request #3624 from gsd-build/fix/3591-bug-gsdtools-native-runtime-drops-workst 
fix(3591): forward workstream to native registry dispatch
 2026-05-15 23:04:16 -04:00
Tom Boucher
11a6d3fdd6 test(3589): assert empty-string workstream fallback 2026-05-15 22:58:36 -04:00
Tom Boucher
a2967bfa24 fix(3589)(security): validate workstream in relPlanningPath against traversal 
`relPlanningPath(workstream)` previously called `posix.join('.planning',
'workstreams', workstream)` without validating the workstream argument.
Direct SDK callers — and `planningPaths` / `ContextEngine` which both
forward through `relPlanningPath` — could pass values like
`'../../../outside'`, `'foo/bar'`, or `'foo\\bar'` and route planning
operations outside the intended `.planning/workstreams/<name>` subtree.

The env-sourced workstream code path in `planningPaths` already validated
via `validateWorkstreamName` (line 444-445, pre-filtering to `null` on
failure per the #2791 silent-fallback contract). Explicit SDK arguments
had no equivalent gate.

Fix: validate inside `relPlanningPath` using the same shared
`validateWorkstreamName` policy. Every caller — direct SDK use,
`planningPaths`, `ContextEngine` — fails closed at the same seam.
Empty/undefined workstream still returns `.planning` for back-compat
(treated as "no workstream provided"); non-empty invalid names throw a
synchronous Error with the offending value in the message.

Env-sourced behaviour is unchanged: `planningPaths` continues to filter
invalid env values to `null` before they reach `relPlanningPath`, so the
silent-fallback path for malformed `GSD_WORKSTREAM` env still works.

Regression test
(sdk/src/bug-3589-planning-paths-validation.test.ts):

  - 9 traversal/invalid cases (.., /, \\, spaces, .hidden, /abs,
    -leading-hyphen) all throw with a `/workstream/i`-matching message.
  - Valid names (`frontend`, `api_v2`, `alpha.beta-1`) continue to
    produce the expected `.planning/workstreams/<name>` path.
  - `planningPaths('/tmp', '../../../outside')` rejects before path
    construction (proven via try/catch — resultPath stays null).
  - Valid workstream + `planningPaths` produces the expected subtree
    (`.planning/workstreams/frontend/STATE.md` etc.).
  - Omitted workstream still returns root `.planning` with no `workstreams`
    segment.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
 2026-05-15 22:52:14 -04:00
Tom Boucher
ed4dfbea16 test(3591): assert native dispatch forwards projectDir/workstream 2026-05-15 22:44:25 -04:00
Tom Boucher
4824aefe42 fix(3591): forward workstream to native registry dispatch in GSDToolsRuntime 
createGSDToolsRuntime accepted opts.workstream and forwarded it to the
QuerySubprocessAdapter (line 38) but the QueryNativeDirectAdapter's
dispatch closure dropped it:

  dispatch: (registryCommand, registryArgs) =>
    registry.dispatch(registryCommand, registryArgs, opts.projectDir)

`registry.dispatch(command, args, projectDir, workstream?)` accepts a
4th workstream argument and forwards it to handlers. When a GSDTools
instance was created with a workstream, the native fast-path silently
routed planning-path queries to the root `.planning/` tree instead of
`.planning/workstreams/<name>/`. Subprocess dispatch correctly carried
the workstream; native dispatch did not — runtime-bridge mode parity
broke for any workstream-aware GSDTools consumer using the native path.

One-line fix: pass opts.workstream as the 4th arg to registry.dispatch.

Regression test exercises three paths:

  1. Constructor-seam unit test: spy on QueryNativeDirectAdapter,
     capture the dispatch closure, verify it reaches a registry that
     reports the unknown-command error message.
  2. Back-compat: same with workstream omitted — closure still reaches
     the registry.
  3. End-to-end: spy on createRegistry to inject a probe registry with a
     registered handler that records its args. Invoke through
     runtime.bridge.dispatchHotpath(). Assert the handler observed
     workstream='frontend-ws' as its 3rd arg.

RED verified: end-to-end probe fails on pre-fix tree with
`expected undefined to be 'frontend-ws'`. GREEN after the fix.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
 2026-05-15 22:35:13 -04:00
Tom Boucher
55e50cf392 fix(3600): count project-code-prefixed phase dirs in milestone filter 
`init.new-milestone` reported `phase_dir_count: 0` for projects whose
phase directories carry a project_code prefix (`.planning/phases/CK-01-name`)
when the ROADMAP used numeric `### Phase N:` headings. Verified via a
temp-project repro that mirrors the reporter's setup.

Root cause: `getMilestonePhaseFilter` builds an `isDirInMilestone(dirName)`
predicate that tries two paths:

  1) Numeric — requires the dir name to START with a digit. `CK-01-name`
     starts with `C`, so this skips.
  2) Custom-ID — captures the leading kebab token (`CK-01-name` as a
     whole) and compares it to the normalised milestone phase IDs
     (`{"1"}`). No match.

There was no path that stripped the project_code prefix before retrying
the numeric match. Added a third path that strips the same shape
`normalizePhaseName` already recognises (`^[A-Z]{1,6}-(?=\d)`) and retries
the numeric match. This runs AFTER the custom-ID path so a ROADMAP that
uses `### Phase PROJ-42:` continues to win via the custom-ID match for
a `PROJ-42` directory; the new branch only fires when the milestone is
keyed on the bare numeric form.

The fix lands in both:

  - get-shit-done/bin/lib/core.cjs:isDirInMilestone (active CJS runtime)
  - sdk/src/query/state.ts:isDirInMilestone (SDK twin)

`getMilestonePhaseFilter` is shared by multiple callers — init.new-milestone,
phase complete, verify-work, validate-health — so the fix benefits every
caller that walks `.planning/phases/` against a numeric ROADMAP.

Regression test
(tests/bug-3600-milestone-phase-filter-project-code-prefix.test.cjs):

  1. Reporter's case: CK-01-name + CK-02-build dirs against Phase 1 / 2
     headings → phase_dir_count === 2.
  2. Existing contract: 01-first dir against Phase 1 heading still counts.
  3. Custom-ID contract: PROJ-42 dir against `### Phase PROJ-42:` still
     counts via the existing custom-ID match (no regression).
  4. Counter-test: CK-99-backlog and CK-100-future dirs MUST NOT count
     against a milestone with only Phase 1 — the strip-and-retry must
     still respect the milestone's actual phase set.

All assertions go through `init new-milestone --json` (typed payload —
`phase_dir_count`). No raw text matching.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
 2026-05-15 22:28:49 -04:00
Tom Boucher
ac34ab2cec fix(3587): address codex-review findings on PR #3611 
Codex review surfaced 2 MED + 2 LOW in-scope findings (3 LOW were
pre-existing or out-of-scope, see below); all in-scope items addressed:

1. (MED, test sensitivity) The gh probe test only checked the boolean
   return shape, so a future change that re-introduces shell-string
   execSync for the gh path would pass. Added an
   `architectural-invariant` structural test that reads the production
   source file and asserts:
     - no `execSync(` call appears anywhere in code,
     - no `spawnSync` with `shell: true`,
     - `execFileSync` is the only imported child_process primitive,
     - every options object explicitly pins `shell: false`.
   This is the canonical pattern from CONTRIBUTING.md for invariants
   that behavioral tests can't observe — the defect is the *presence*
   of the shell parsing primitive, not its output.

2. (MED, cross-platform) The execFileSync options didn't explicitly pin
   `shell: false`. Default is already false, but spelling it out (a)
   documents the architectural invariant at the call site, (b) prevents
   a future options-spread refactor from silently flipping it, and
   (c) hardens against a Windows `git.cmd` shim path that could
   otherwise route through cmd.exe.

3. (LOW, test visibility) The exploit-blocked test silently `return`ed
   when git rejected the payload branch name on a stricter platform,
   turning a coverage loss into a stealth pass. Replaced with vitest's
   `ctx.skip()` so a lane that loses coverage now shows up in the skip
   count.

Out of scope, intentionally not changed:
- The `try/finally` at sdk/src/query/check-ship-ready.test.ts:79 is
  pre-existing test code from before this PR. One-concern-per-PR rule
  says no drive-by cleanup.
- The "use createTempGitProject helper" suggestion: that helper lives
  in tests/helpers.cjs (root, node:test world). SDK tests use vitest
  with their own ad-hoc tmpdir pattern; matching the SDK convention.
- The afterEach cleanup uses `rm` directly, matching the surrounding
  SDK test convention; not changing without broader SDK-side refactor.

Validation:
- SDK unit suite via vitest: 1,870/1,870 pass (+1 invariant test).
- Full root suite via gsd-test-both: 10,676/10,676 Mac AND Linux Docker,
  zero cross-platform diff.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
 2026-05-15 20:51:05 -04:00
Tom Boucher
4e7e83bf58 fix(3587)(security): argv-based subprocess for check.ship-ready 
`gsd-sdk query check.ship-ready <phase>` built a git command as a shell
string with the current branch name interpolated. Git branch names can
legally contain shell metacharacters, so a repo checked out on a
malicious branch like `foo;touch${IFS}INJ;bar` executed arbitrary shell
commands.

Vulnerability site (pre-fix):

  sdk/src/query/check-ship-ready.ts:50
    runSyncSafe(`git config --get branch.${current_branch}.merge`, cwd)
  → execSync('git config --get branch.foo;touch${IFS}INJ;bar.merge')
  → /bin/sh -c parses three commands; the middle one runs `touch INJ`
    in the project dir and creates the sentinel file.

Manually reproduced on git 2.53.0:
  - refname `foo;touch${IFS}INJ;bar` is accepted by `git check-ref-format`
    and by `git checkout -b`.
  - `current_branch` returned from `git rev-parse --abbrev-ref HEAD`
    contains the metacharacters verbatim.
  - Interpolation into the buggy execSync call creates the sentinel.

Fix:

- Replace `runSyncSafe(cmd: string, cwd)` (execSync, shell-string) with
  `runArgvSafe(file, args: readonly string[], cwd)` (execFileSync,
  argv-based, no shell).
- Same shape for the boolean wrapper: `boolArgvSafe`.
- Convert all 7 subprocess sites in the module to argv form:
  - `git status --porcelain`
  - `git rev-parse --abbrev-ref HEAD`
  - `git config --get branch.<name>.merge`   ← the interpolation site
  - `git rev-parse --verify main`
  - `git remote`
  - `gh --version`
  - `which gh`
- Shell is never invoked. Branch names — even ones with `;`, `$IFS`,
  backticks, `$()` — are passed as a single argv element and treated
  as opaque data.

Regression test (`sdk/src/query/check-ship-ready.test.ts`):

- `#3587: branch name with shell-injection payload does not execute
  injected command` — creates a real git repo, checks out the proven
  exploit branch `foo;touch${IFS}INJECTED_BY_3587;bar`, runs
  checkShipReady, and asserts the sentinel file does NOT exist. This
  test FAILS on the unfixed code (verified pre-implementation) and
  PASSES on the fixed code — true red→green TDD.
- `#3587: round-trips a metacharacter branch name verbatim in
  current_branch` — positive proof the branch name survives argv as
  data (would fail if a future change re-introduces shell quoting).
- `#3587: gh probe does not invoke a shell` — locks the gh path
  against a future regression that might add an interpolation site.

Validation:
- SDK unit suite via vitest: 1,869/1,869 pass.
- Full root suite via gsd-test-both (per CLAUDE.md): 10,676/10,676
  on Mac AND 10,676/10,676 on Linux Docker, zero cross-platform diff.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
 2026-05-15 20:42:52 -04:00
Tom Boucher
05d4ba8147 Revert "Merge pull request #3578 from gsd-build/fix/3569-init-plan-phase-status" 
This reverts commit a244dd7fc3, reversing
changes made to 8f95b2fe23.
 2026-05-15 15:16:55 -04:00
Tom Boucher
a244dd7fc3 Merge pull request #3578 from gsd-build/fix/3569-init-plan-phase-status 
fix(3569): surface phase_status from init.plan-phase; gate /gsd:plan-phase on closed phases
 2026-05-15 15:11:38 -04:00
Tom Boucher
21ae65f433 fix(3560): ignore archived phases for W007 warnings 2026-05-15 15:07:34 -04:00
Tom Boucher
0aa4bd92fb fix(3569): surface phase_status from init.plan-phase + gate /gsd:plan-phase on closed phases 
Adds a new `phase_status` field to the `init.plan-phase` SDK + CJS query
output and a §1.5 "Closed-Phase Gate" in workflows/plan-phase.md that
short-circuits on closed phases instead of silently replanning over
shipped code.

## What was broken

`gsd-sdk query init.plan-phase <N>` returned the same "ready to plan"
payload for a closed phase (REQUIREMENTS Met, VERIFICATION.md status:
passed, ROADMAP flipped) as for an open one. No field signaled closure,
so `/gsd:plan-phase --reviews` happily replanned over closed phases —
risking documentation drift on already-shipped code.

## Fix

- Export `determinePhaseStatus` from `commands.cjs` (already present, was
  module-private).
- Both `cmdInitPlanPhase` (CJS) and `initPlanPhase` (TS SDK) now compute
  `phase_status` from plan/summary counts + VERIFICATION.md status using
  the existing `determinePhaseStatus` helper — the project-wide phase
  lifecycle vocabulary (Pending | Planned | In Progress | Executed |
  Complete | Needs Review). No directory yet → Pending.
- Workflow `plan-phase.md` adds §1.5 "Closed-Phase Gate":
  - `phase_status == "Complete"` with `--reviews` → hard-stop, no
    override (replanning a closed phase via review feedback is never
    legitimate; concerns belong in a follow-up phase or new issue).
  - `phase_status == "Complete"` without `--force` → exit with a clear
    notice pointing at VERIFICATION.md.
  - `phase_status == "Complete"` with `--force` → continue with a
    transcript banner so the deliberate replan is visible.

`Executed` and `Needs Review` are intentionally not gated — those mean
planning finished but verification did not pass, and replanning is the
correct next step.

## Tests

- SDK: 4 new `phase_status` cases in init.test.ts covering Pending /
  Planned / Executed / Complete transitions.
- Existing init.plan-phase golden parity test continues to pass (the
  `researcher_model: '' vs sonnet` drift in that test predates this
  change and is unrelated).
- Full Mac+Docker suite: 9323 / 9323 passed (Mac), 9318 / 9323 passed
  (Docker, 5 skipped).

Fixes #3569
 2026-05-15 15:04:39 -04:00
Tom Boucher
54d27b6542 Merge pull request #3565 from gsd-build/fix/3559-validate-health-w006-false-positive-for- 
fix: avoid W006 for not-started future phases
 2026-05-15 15:03:08 -04:00
Tom Boucher
9052ed309c fix(3559): preserve phase suffixes in W006/W007 normalization 2026-05-15 14:46:11 -04:00
Tom Boucher
7ebcf41939 feat(3567): state.* router delegates via executeForCjs + Phase 5.0 worker fix (Phase 5.1 of #3524) 
Phase 5.1 of the CJS↔SDK hard-seam migration (parent #3524). Migrates
the bin/lib/state-command-router.cjs handlers map to delegate every
canonical state subcommand through the executeForCjs synchronous
primitive (shipped in Phase 5.0, PR #3558).

## Bundled fix for Phase 5.0 worker defect

Discovered during Phase 5.1 implementation that the Phase 5.0
worker drops projectDir and workstream from
RuntimeBridgeExecuteInput. The dispatch closure at
sdk/src/runtime-bridge-sync/worker.ts:41-42 hardcoded projectDir
to '', so registry handlers that read .planning/ from projectDir
(every state.* handler) saw an empty path and failed. Phase 5.0's
pinning tests passed because they exercised commands that don't
depend on projectDir (generate-slug takes its arg directly;
unknown_command doesn't dispatch). Maintainer authorized bundling
the fix into this PR.

Fix: moved QueryNativeDirectAdapter construction inside the
dispatchNative lambda so request.projectDir and request.workstream
close over the per-request values. Per-request adapter construction
adds <1ms overhead; correctness wins. Regression test at
sdk/src/runtime-bridge-sync/projectdir-regression.test.ts demonstrates
RED before fix → GREEN after.

Phase 5.0's index.test.ts native_failure fixture was passing
because of the bug — it relied on projectDir = '' producing a
specific error path. Updated to use a /nonexistent-... path that
triggers ENOENT under realpath, producing native_failure as intended.

## What landed for Phase 5.1

- bin/lib/state-command-router.cjs migrated. Every subcommand
  entry in the handlers map dispatches via executeForCjs when SDK
  is available, with transparent fallback to the existing CJS
  handlers in state.cjs if (a) SDK is not built / not present, or
  (b) GSD_WORKSTREAM is set (the sync-bridge worker cannot serve
  workstream-scoped commands per the SDK transport architecture).
- Special cases preserved:
  - load --raw: SDK data formatted into key=value lines matching
    cmdStateLoad's exact format.
  - complete-phase: CJS-only (no SDK counterpart yet).
  - add-roadmap-evolution: stays on the unsupported list (SDK-only).
- Golden parity tests added for 12 previously-uncovered state
  subcommands: advance-plan, record-metric, update-progress,
  add-decision, add-blocker, resolve-blocker, record-session,
  signal-waiting, signal-resume, planned-phase, milestone-switch,
  prune.

## Design decisions worth reviewer visibility

1. Lazy SDK loading with CJS fallback. The migration routes via
   executeForCjs only when the SDK is loadable; otherwise falls
   back to the existing CJS handlers. Conservative for rollback —
   if the SDK build is broken on a deploy, state commands keep
   working via the CJS path. Trade-off: drift surface is not
   structurally eliminated yet — the CJS handlers remain reachable.

2. Workstream → CJS fallback. The SDK transport forces subprocess
   for workstream commands, but subprocess is disabled in the sync
   bridge. When GSD_WORKSTREAM is set, the entire state command
   falls back to CJS rather than failing. Workstream users continue
   running the CJS handlers; the SDK path is exercised only in the
   default (no workstream) case.

3. Two documented parity divergences. state.record-metric: CJS
   auto-creates ## Performance Metrics section when absent; SDK
   returns {recorded: false, reason}. Test requires fixture with
   the section present. state.prune: CJS counts phases from disk;
   SDK reads from frontmatter fields. Test asserts structural shape
   rather than exact equality.

## Numbers

- Full CJS suite: 9323/9323 pass (baseline 9323; +0 net because
  the 12 new parity tests are SDK-side vitest, not CJS-side).
- SDK vitest sync-bridge: 10/10 pass.
- Regression test: 3/3 pass (proved RED before fix, GREEN after).
- tests/state.test.cjs (the safety net): 104/104 pass unchanged.

## Performance

gsd-tools state load via the SDK path: 49ms first call (Worker
startup), 43-44ms steady-state median. Slower than the
Phase 5.0-measured 0.1ms because state.load does fs reads on top
of the bridge overhead. Still well within the budget for CJS
dispatcher overhead.

Closes #3567.
 2026-05-15 14:34:25 -04:00
Tom Boucher
1ba9e55998 fix(3559): skip W006 for unchecked future phases 2026-05-15 12:53:43 -04:00
Tom Boucher
1a4e6df6b3 Merge pull request #3557 from gsd-build/feat/3347-auto-update-knowledge-graph-after-main-h 
feat(3347): opt-in auto-update of knowledge graph after main HEAD advances
 2026-05-15 12:06:41 -04:00
Tom Boucher
d20d3e88b5 fix: align settings docs and inventory completion matching 2026-05-15 11:59:43 -04:00
Tom Boucher
fcef212926 test: align runtime-bridge coverage header 2026-05-15 11:59:11 -04:00
Tom Boucher
3ca410b5cc test: pin runtime-bridge-sync error classifications 2026-05-15 11:52:56 -04:00
Tom Boucher
8090456b66 feat(3555): QueryRuntimeBridge.executeForCjs synchronous primitive (Phase 5.0 of #3524) 
Phase 5.0 of the CJS↔SDK hard-seam migration (parent #3524).
Foundational PR. Ships ONLY the synchronous primitive on the SDK
runtime bridge plus pinning tests. Per-family CJS router migrations
(state.*, verify.*, init.*, phase.*, phases.*, validate.*,
roadmap.*, frontmatter.*, config.*) become follow-up enhancements
that each reuse this primitive.

## What landed

- sdk/src/runtime-bridge-sync/index.ts (155 lines) — public API.
  Exports executeForCjs(input: RuntimeBridgeExecuteInput):
  RuntimeBridgeSyncResult. Synchronous; lazily creates the
  synckit sync function on first call.
- sdk/src/runtime-bridge-sync/worker.ts (167 lines) — synckit
  worker. Constructs a native-only QueryRuntimeBridge (with
  allowFallbackToSubprocess: false), awaits its async execute,
  catches GSDToolsError / GSDError, maps classification to the
  six ADR-0001 canonical error kinds plus exit code.
- sdk/src/runtime-bridge-sync/index.test.ts (197 lines, 8 vitest
  pinning fixtures) — success path; unknown_command;
  native_failure (shape); validation_error (shape); shape
  invariants; idempotency.
- tests/runtime-bridge-sync-smoke.test.cjs (99 lines, 4
  node:test cases) — proves the primitive works from CJS
  callers via require().

## Decisions

1. Synchronous-bridging mechanism: synckit. Disqualified:
   - deasync: stagnant (68 open issues, single maintainer,
     last release Nov 2025), private Node API (process.binding('uv')),
     untested on Node 22, documented deadlocks with modern
     Promise chains.
   - Sync-native SDK refactor: technically infeasible —
     acquireStateLock in state-mutation.ts uses await setTimeout
     for retry backoff; making that fully sync requires either
     Atomics.wait (which IS synckit), busy-loop (degrades
     responsiveness), or breaking 100+ SDK consumers.
   Synckit (v0.11.12) is pure JS, actively maintained (last
   push today), stable public APIs (Atomics.wait +
   SharedArrayBuffer), Node 22 compatible, no native compile.

2. Native-only transport inside the worker. The sync bridge
   uses allowFallbackToSubprocess: false. Unknown commands
   surface as unknown_command instead of spawning gsd-sdk.
   Keeps the worker self-contained and predictable.

3. Worker path resolution. resolveWorkerPath() navigates ../..
   from the loaded module URL to land at
   dist/runtime-bridge-sync/worker.js — works under both
   vitest (loads src) and CJS consumers (load dist).

4. GSDError.Blocked → validation_error. ADR-0001's 6-kind
   taxonomy has no `blocked` kind; Blocked classification is
   mapped onto validation_error since the operational shape
   matches (prerequisite missing).

## Numbers

- 8 SDK vitest pinning tests pass.
- 4 CJS smoke tests pass.
- Full suite: 9286/9286 pass (baseline 9282; +4 from the
  new smoke test cases).
- SDK vitest unit: 1860/1860 pass.
- Performance: 80ms first-call cold latency (Worker startup +
  bridge construction); 0.1ms steady-state per-call latency
  (10-call average after warmup). Well within budget for CJS
  dispatcher overhead.

## Canonical error kind coverage

- unknown_command: covered with pinning fixture
- native_failure: shape coverage (handler that throws)
- validation_error: shape coverage (GSDError.Validation +
  GSDError.Blocked)
- internal_error: shape coverage only (eliciting TypeError
  reliably from a registered handler requires elaborate fixture)
- native_timeout: NOT pinned (no registered handler genuinely
  times out; classification logic present in worker)
- fallback_failure: NOT pinned (subprocess fallback disabled
  by design in sync bridge)

The classification logic is in the worker regardless; per-family
migration PRs will exercise the unpinned kinds incidentally.

## Wiring

- sdk/package.json: synckit ^0.11.12 added as runtime
  dependency (not devDependency — it's required at runtime
  whenever a CJS caller invokes executeForCjs).
- sdk/package-lock.json: regenerated.
- CONTEXT.md: new "Sync Runtime Bridge Module" entry added
  after Dispatch Policy Module. Existing "CJS Command Router
  Adapter Module" entry amended with one sentence pointing at
  the primitive and the per-family migration roadmap.

No generator/freshness check needed for this phase — the
primitive IS the SDK (not a generated CJS mirror).

Closes #3555.
 2026-05-15 11:10:03 -04:00
Tom Boucher
a3ca6ff6d6 feat(3553): Project-Root Resolution Module via generator (Phase 4 of #3524) 
Phase 4 of the CJS↔SDK hard-seam migration (parent #3524).
Eliminates the `findProjectRoot` duplication that lived at
bin/lib/core.cjs:74-140 and sdk/src/query/helpers.ts:497-590,
the drift carrier behind historical bugs #1362 and #2561.

- sdk/src/project-root/index.ts — source of truth (120 lines,
  pure-with-sync-fs). Exports findProjectRoot(startDir: string)
  and FIND_PROJECT_ROOT_MAX_DEPTH constant.
- sdk/src/project-root/index.test.ts — 13 vitest pinning fixtures
  covering all four heuristics, the #1362 guard, malformed
  config fallback, empty sub_repos, deep nesting, and depth-limit
  enforcement.
- sdk/scripts/gen-project-root.mjs — generator. Captures
  function body via Function.prototype.toString() from compiled
  sdk/dist/. Emits CJS preamble for destructured node:fs /
  node:path / node:os imports.
- sdk/scripts/check-project-root-fresh.mjs — freshness check.
  Imports the generator function directly (Phase 3's cleaner
  pattern).
- get-shit-done/bin/lib/project-root.generated.cjs — generator-
  emitted CJS mirror.
- tests/project-root-generator.test.cjs — 11 parity assertions
  comparing SDK source and generated CJS for every fixture.

- sdk/src/query/helpers.ts: -127 lines. The 94-line inline
  findProjectRoot plus the FIND_PROJECT_ROOT_MAX_DEPTH constant
  (originally at line 471) replaced by a single re-export:
  `export { findProjectRoot } from '../project-root/index.js';`
  Removed unused `parse as parsePath` import.
- get-shit-done/bin/lib/core.cjs: -83 lines net. The 67-line
  inline findProjectRoot replaced by a single
  `require('./project-root.generated.cjs')`. The detectSubRepos
  helper at lines 40-56 stays (used by loadConfig migration).

- sdk/package.json: gen:project-root + check:project-root-fresh
  scripts.
- package.json: proxy for the freshness check.
- .githooks/pre-commit: drift block.
- .github/workflows/test.yml: drift check step after the
  state-document drift step.
- CONTEXT.md: Project-Root Resolution Module entry.
- docs/INVENTORY.md, docs/INVENTORY-MANIFEST.json:
  +1 module count, +1 row.

- Full suite: 9226/9226 pass (baseline 9215 + 11 new parity
  fixtures).
- SDK vitest: 1804/1804 pass.
- Reader shrink: -127 SDK + -83 CJS = 210 lines of duplication
  deleted across the two Readers. New shared Module is 120 lines.

1. Depth limit canonicalization. CJS findProjectRoot previously
   had no explicit walk-up bound (walked until dir === root or
   homedir). The new Module uses FIND_PROJECT_ROOT_MAX_DEPTH = 10,
   matching the SDK's pre-existing value. Only affects paths
   nested more than 10 levels deep from a .planning/ root — a
   pathological case in practice. None of the existing 22 CJS
   findProjectRoot tests covered this; the new parity test does.
2. platformReadSync → readFileSync. The old CJS findProjectRoot
   used the platformReadSync wrapper from
   shell-command-projection.cjs for reading .planning/config.json,
   which returns null on read failure. The Module uses raw
   readFileSync, which throws — caught by the surrounding
   try/catch that already swallowed errors. Functionally
   equivalent for the existing code path; no test exercises the
   null-return semantic.

Closes #3553.
 2026-05-15 10:07:10 -04:00
Tom Boucher
6a26e0c78b fix: remove unused path import in inventory builder 2026-05-15 09:35:02 -04:00
Tom Boucher
ed8f4c9a31 feat(3544): Workstream Inventory Builder/Reader split (Phase 3 of #3524) 
Phase 3 of the CJS↔SDK hard-seam migration (parent #3524).
Introduces the Builder/Reader pattern for paired Modules with
mixed pure-and-I/O concerns — the template for Phase 4 and
follow-up enhancements that migrate other paired Modules.

Phase 1 and Phase 2 migrated Modules where both sides used
character-equivalent logic. Phase 3 introduces the case where
the pure logic is shareable but the I/O is legitimately per-side.
The Builder/Reader split resolves this:

- The Builder is pure — accepts pre-collected data
  (BuilderInputs struct), returns the typed projection. One
  source of truth; one generator-emitted CJS mirror. Drift
  is structurally impossible.
- The Readers are per-side hand-authored Adapters that do the
  fs reads in their native idiom (currently both sync; either
  side can go async later without touching the Builder), then
  delegate to the Builder.

- sdk/src/workstream-inventory/builder.ts — Builder source.
  170 lines. Pure. Exports buildWorkstreamInventory(inputs),
  isCompletedInventory(status), plus the three typed inventory
  interfaces (WorkstreamPhaseInventory, WorkstreamInventory,
  WorkstreamInventoryList).
- sdk/src/workstream-inventory/builder.test.ts — 18 vitest
  pinning fixtures across all status branches, progress-percent
  clamping, active-marker projection, and isCompletedInventory
  classifier.
- sdk/scripts/gen-workstream-inventory-builder.mjs — generator.
  Captures function bodies via Function.prototype.toString();
  emits with the standard GENERATED FILE banner. Includes a
  small `const relative = path.relative;` preamble in the
  output to handle ESM destructured imports in the compiled
  source.
- sdk/scripts/check-workstream-inventory-builder-fresh.mjs —
  freshness check. Imports the generator function directly
  (rather than duplicating logic) — a cleaner pattern than
  Phase 1/2's approach.
- get-shit-done/bin/lib/workstream-inventory-builder.generated.cjs —
  generator-emitted CJS mirror.
- tests/workstream-inventory-builder-generator.test.cjs — 16
  parity assertions confirming CJS-generated output ==
  SDK source output for every fixture.

- bin/lib/workstream-inventory.cjs: 159 → 132 lines.
  Projection logic gone. `inspectWorkstream` and
  `listWorkstreamInventories` collect BuilderInputs via the
  existing sync fs functions and delegate to the Builder.
  `isCompletedInventory` re-exported from the Builder (its
  signature changed from object→string, but no external
  callers exist so the change is safe).
- sdk/src/query/workstream-inventory.ts: 196 → 143 lines.
  Same shape, sync fs (the SDK was already sync — surprise from
  recon). Types re-exported from the Builder.

- sdk/package.json: gen:workstream-inventory-builder and
  check:workstream-inventory-builder-fresh scripts.
- package.json: proxy for the freshness check.
- .githooks/pre-commit: drift block.
- .github/workflows/test.yml: drift check step.
- CONTEXT.md: amended "Workstream Inventory Module" entry
  to document the Builder/Reader split.
- docs/INVENTORY.md, docs/INVENTORY-MANIFEST.json:
  +1 module count, +1 row for the generated builder.

- Full suite: 9229/9229 pass (baseline 9215 + 14 net new from
  the parity assertions).
- Vitest: 18 Builder fixtures pass.
- Reader shrink: -27 lines on CJS, -53 lines on SDK.
- Net diff (modified files only): +68 / -133 = 65-line
  reduction. New files (Builder, generator, freshness check,
  parity test) add ~600 lines of new structured code.

1. `isCompletedInventory` signature changed from
   isCompletedInventory(inventory: object) to
   isCompletedInventory(status: string). Original CJS exported
   the object form but no external caller passed an object —
   they all passed inventory.status. Verified by grep before
   committing.
2. Generator preamble. The compiled ESM uses
   `import { relative } from 'node:path'`, making `relative`
   a free variable in `buildWorkstreamInventory`. The generator
   emits `const relative = path.relative;` so the captured
   function body works in CJS.
3. Freshness check imports the generator. The freshness check
   imports the generator's buildWorkstreamInventoryBuilderCjs()
   function directly rather than duplicating generation logic.
   Cleaner than Phase 1/2; future generators should follow this.

Shareable via the Builder/Reader pattern in future enhancements:
- frontmatter (pure YAML/markdown parsing)
- plan-scan (pure PLAN.md structure parsing)
- decisions (pure decision-record parsing)
- secrets (regex-based detection in text)
- uat (UAT-criteria parsing)

Structural divergence — different approach needed:
- state — sync vs async file ops; mutation paths differ.
- workstream — lifecycle ops; per-side API surface differs.
- phase, roadmap, init, profile-output, template — large
  surfaces; each its own potential enhancement.

None of these is in scope for Phase 3.

Closes #3544.
 2026-05-15 09:35:02 -04:00
Tom Boucher
173743fd9e fix: preserve canonical sub-repos normalization semantics 2026-05-15 09:25:49 -04:00
Tom Boucher
12a9f4f038 fix: harden configuration dynamic patterns and writes 2026-05-15 09:18:15 -04:00
Tom Boucher
2de2d185fa feat(3536): Configuration Module via shared manifests + generator (Phase 2 of #3524) 
Phase 2 of the CJS↔SDK hard-seam migration (parent #3524).
Eliminates the structural drift surface that produced bug class

After this phase, neither bin/lib/ nor sdk/src/ defines
CONFIG_DEFAULTS, VALID_CONFIG_KEYS, DYNAMIC_KEY_PATTERNS, or the
four legacy-key normalizations inline. All come from one canonical
source: the Configuration Module (sdk/src/configuration/index.ts)
+ two JSON manifests (sdk/shared/config-{defaults,schema}.manifest.json).
The CJS mirror is generator-emitted (get-shit-done/bin/lib/configuration.generated.cjs)
with a CI freshness check (sdk/scripts/check-configuration-fresh.mjs).

- sdk/shared/config-defaults.manifest.json — canonical nested defaults,
  union of CJS + SDK keys (includes security_*, post_planning_gaps,
  agent_skills, mode, every git/workflow/hooks sub-section).
- sdk/shared/config-schema.manifest.json — VALID_CONFIG_KEYS array,
  RUNTIME_STATE_KEYS array, DYNAMIC_KEY_PATTERNS array with source
  strings (regex reconstructed at runtime).
- sdk/src/configuration/index.ts — source of truth. Exports
  loadConfig (pure read), normalizeLegacyKeys (pure, idempotent,
  returns Normalization[]), mergeDefaults (deep-merge), migrateOnDisk
  (explicit opt-in disk writeback), plus CONFIG_DEFAULTS,
  VALID_CONFIG_KEYS, RUNTIME_STATE_KEYS, DYNAMIC_KEY_PATTERNS.
- sdk/src/configuration/index.test.ts — 29 vitest pinning tests.
- sdk/scripts/gen-configuration.mjs — generator (Function.prototype.toString()
  inspection of compiled SDK dist, plus brace-balanced text scan for
  internal helpers, matching the Phase 1 pattern).
- sdk/scripts/check-configuration-fresh.mjs — CI freshness gate.
- tests/configuration-generator.test.cjs — 27 parity assertions
  (CJS-generated == SDK source).
- tests/configuration-migrate-config.test.cjs — 3 cases for the new
  gsd-tools migrate-config subcommand.

- bin/lib/core.cjs: CONFIG_DEFAULTS literal now sources values from
  CANONICAL_CONFIG_DEFAULTS (the manifest), with a thin flat
  projection at the load boundary to preserve the existing
  flat-shape return contract for the ~21 CJS test files and 100+
  consumers. All four legacy-key migration blocks (branching_strategy,
  sub_repos, multiRepo, depth — historically lines 351-358, 388-397,
  401-408, 416-423) collapse to a single normalizeLegacyKeys call
  in each code path. The inline platformWriteSync writeback stays
  for now to preserve sync loadConfig semantics; the new async
  migrateOnDisk is reachable via gsd-tools migrate-config.
- bin/lib/config-schema.cjs: 135 → 31 lines. Re-exports from the
  generated Module.
- bin/lib/config.cjs: adds cmdMigrateConfig handler (calls
  migrateOnDisk on the explicit user-driven path).
- bin/gsd-tools.cjs: wires migrate-config into command dispatch.

- sdk/src/config.ts: re-exports CONFIG_DEFAULTS and mergeDefaults
  from the Module. loadConfig now calls normalizeLegacyKeys before
  mergeDefaults (replaces the inline branching_strategy graft).
- sdk/src/query/config-schema.ts: 160 → 36 lines. Re-exports from
  the Module.

- tests/config-schema-sdk-parity.test.cjs: refactored from
  "CJS Set equals SDK Set" (trivially true post-migration) to
  "both sides source from the manifest" — structural plus runtime
  invariant.
- Four other tests that text-grepped source files for valid keys
  (plan-review-convergence, bug-3212, bug-2492, feat-3210) are
  updated to use runtime VALID_CONFIG_KEYS.has() or manifest JSON
  lookups.

- CONTEXT.md: new Configuration Module entry with full Interface
  contract.
- Root package.json: check:configuration-fresh proxy script.
- sdk/package.json: gen:configuration + check:configuration-fresh.
- .githooks/pre-commit: configuration drift block.
- .github/workflows/test.yml: configuration drift step after the
  alias drift check.

- 9201 CJS tests pass (baseline pre-cycle: 9195; +6 net new tests
  across migrate-config + parity refactor)
- 1872 SDK vitest tests pass
- 29 Configuration Module vitest fixtures
- 27 CJS/SDK parity fixtures
- Net diff: +388 / −519 = 131-line reduction across the seven cycles,
  despite adding the new Module, manifests, generator, freshness
  check, and two new test files.

1. SDK CONFIG_DEFAULTS now includes manifest-canonical keys
   (resolve_model_ids: false, context_window: 200000, phase_naming,
   claude_md_path, git.create_tag, workflow.security_*,
   workflow.code_review_*, planning.*, hooks.workflow_guard, ship.*).
   Consumers accessing via [key: string]: unknown index get
   the manifest default instead of undefined.
2. SDK mergeDefaults is now proper recursive deep-merge instead of
   spread-per-section. Overlay { workflow: { research: false } }
   now preserves sibling workflow keys; previously it replaced
   the entire workflow section with only research + the section's
   defaults. Semantically identical for the common case;
   strictly better for partial nested overrides.
3. New gsd-tools migrate-config CLI subcommand for the explicit,
   opt-in on-disk migration path.

Closes #3536.
 2026-05-15 00:02:56 -04:00
Tom Boucher
bfd7ddbad3 feat(3530): STATE.md Document Module via generator (Phase 1 of #3524) (#3531) 
* feat(3530): STATE.md Document Module via generator (Phase 1 of #3524)

Phase 1 of the CJS↔SDK hard-seam migration (parent #3524).
Converts the hand-synced state-document.cjs/state-document.ts pair
into a generator-driven seam, modeled on the existing
command-aliases.generated.* precedent.

What landed:
- sdk/src/query/state-document.ts is the source of truth.
- sdk/scripts/gen-state-document.ts emits
  get-shit-done/bin/lib/state-document.generated.cjs from the
  compiled SDK dist via Function.prototype.toString() inspection
  for the 7 public exports and 3 internal helpers.
- sdk/scripts/check-state-document-fresh.mjs is the CI freshness
  gate; pre-commit hook also runs it when relevant files change.
- get-shit-done/bin/lib/state-document.cjs is reduced to a one-line
  re-export from state-document.generated.cjs so existing callers
  (state.cjs, workstream-inventory.cjs, init.cjs) need no changes.
- New CI step in .github/workflows/test.yml after the existing alias
  drift check.
- sdk/package.json: gen:state-document, check:state-document-fresh
  scripts. tsx added as devDep.
- Root package.json: proxy script for the freshness check.
- CONTEXT.md: one-sentence amendment on STATE.md Document Module
  recording the source-of-truth file path.

Tests:
- sdk/src/query/state-document.test.ts: 34 vitest fixtures across
  the 7 public exports (TDD pinning safety net).
- tests/state-document-generator.test.cjs: 31 node:test parity
  assertions comparing SDK source vs generated CJS for every
  fixture.
- Full suite: 9177/9177 pass (baseline was 9146; +31 new tests).

One subtle behavior change worth flagging: the old hand-written
state-document.cjs used String(str) coercion inside escapeRegex,
which the SDK source does not. The generator faithfully matches
the SDK (the source of truth per ADR-3524), so the new CJS no
longer coerces non-string input to string before regex-escaping.
No current caller passes non-string input, so no observable
regression in the test suite. Flagged in the PR body for
reviewers.

Closes #3530.

* fix(3530): address state-document review findings
 2026-05-14 22:17:20 -04:00
Tom Boucher
d4d4178603 Merge pull request #3483 from radioflyer28/feat/agent-launch-reasoning-transport-3474 
feat: transport resolved reasoning effort to agent launches
 2026-05-14 20:01:32 -04:00
Tom Boucher
585e417f9e fix: harden respect-staged pathspec handling 2026-05-14 19:44:04 -04:00
Tom Boucher
017abd9236 feat(sdk): add --respect-staged opt-in to gsd-sdk query commit --files (#3522) 
Closes #3522. When --respect-staged is passed the git add loop is skipped
entirely so per-hunk staging from git add -p is preserved. Default behavior
(full re-stage) is unchanged. The #3061 pathspec invariant holds under both
modes. Nothing-staged within scope returns { committed: false, reason:
'nothing staged' } without error.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
 2026-05-14 19:08:08 -04:00
Tom Boucher
200c012f84 fix(sdk): derive completed_phases from ROADMAP and refresh all STATE.md fields after phase.complete 
Fixes two root causes behind bug #3517:

1. Idempotency: completed_phases was blindly incremented (parseInt + 1),
   causing phase.complete N run twice to double-count (4 → 5 → 6).
   Now derives from ROADMAP progress table Complete-row count, making
   the operation idempotent.

2. Field coverage: eight STATE.md fields were left stale after phase
   completion. Now updates in the same atomic lock section:
   - frontmatter: stopped_at, last_updated, total_plans, completed_plans
   - body: Current focus, Status line, By Phase table row

   completed_plans = count of *-SUMMARY.md files across all phase dirs
   total_plans = sum of M/N plan counts from ROADMAP progress table
   percent = recomputed from fresh derived counts

Closes #3517

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
 2026-05-14 16:56:18 -04:00
Tom Boucher
e0adba7e08 feat(statusline): add opt-in context_position config for narrow terminals (#2937) 
Extract composeStatusline() helper from duplicated inline template logic in
runStatusline() and renderStatusline(). Both call sites now route through the
helper, which accepts a position param ('end' | 'front', default 'end').

- 'end' (default) preserves byte-identical output to v1.38.x and earlier
- 'front' renders ctx immediately after model name, before the first │
- Invalid values silently coerce to 'end' at runtime (belt-and-suspenders;
  config-set rejects invalid values upfront via enum validator)

Adds statusline.context_position to VALID_CONFIG_KEYS in both CJS and TS
schemas, enum validator in config.cjs, docs row in CONFIGURATION.md,
and a changeset. Closes #2937.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
 2026-05-14 15:45:41 -04:00
Tom Boucher
da21edfb59 feat(workflow): add git.create_tag config to disable milestone tagging 
Adds boolean config key `git.create_tag` (default: true, fully backcompat)
so projects with their own release flow can disable GSD's automatic
`git tag -a v[X.Y]` on milestone completion. Also adds tag-collision
pre-check to prevent silent failure on re-run. Closes #3086

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
 2026-05-14 12:06:36 -04:00
Tom Boucher
62c64a757c Merge pull request #3500 from gsd-build/fix/3493-extract-milestone-generic-phase-details 
fix(sdk): extractCurrentMilestone preserves generic Phase Details heading (#3493)
 2026-05-14 10:08:44 -04:00
Tom Boucher
bb02b16698 Merge pull request #3501 from gsd-build/fix/3488-decimal-phase-short-form-depends-on 
fix(sdk): expand short-form depends_on for decimal-phase plans (#3488)
 2026-05-14 10:08:40 -04:00
Tom Boucher
5a8495adb7 fix(init): preserve inside=true on root lookup failures 2026-05-14 09:56:36 -04:00
Tom Boucher
fb6633ceda fix(workflow): detect nested git worktree in new-project bootstrap (#3491) 
The `has_git` boolean returned by `init new-project` and `init ingest-docs`
was derived from a shallow `pathExists(cwd, '.git')` check, so a subdirectory
of an existing repo reported `has_git: false`. The workflow then ran
`git init`, creating a nested `.git` inside the outer worktree and silently
diverting subsequent `gsd-sdk commit` calls into the nested repo.

Replace the shallow check with `git rev-parse --is-inside-work-tree`
semantics in both CJS (`get-shit-done/bin/lib/init.cjs`) and TS
(`sdk/src/query/init.ts`, `sdk/src/query/init-complex.ts`) handlers via a new
shared `gitWorktreeInfoInternal` helper, and expose `git_worktree_root` +
`in_nested_subdir` so the workflows can refuse `git init` inside an existing
worktree and warn that planning files will track to the outer repo.

Regression test: `tests/bug-3491-nested-git-worktree.test.cjs`.

Fixes #3491

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
 2026-05-14 09:11:59 -04:00
Tom Boucher
809c2bee39 fix(sdk): expand short-form depends_on for decimal-phase plans (#3488) 
The DAG resolver in phase-plan-index only matched full-stem
('03-01-auth-hardening') and canonical-prefix ('03-01') forms when
resolving `depends_on` references, so plans in decimal phases
(e.g. `99.9-test`, `02.2-cross-repo`) declaring short-form
`depends_on: [01]` had their edges silently dropped. Dependents
collapsed into wave 1 and the SDK emitted a misleading
"declared wave: N but depends_on DAG places it in wave 1" warning
that pointed at the wave declaration rather than the broken reference.

Add a tertiary short-form index keyed on the trailing `-NN` of each
plan's canonical ID — derived per plan via `lastIndexOf('-')` so it
handles integer, letter-suffixed, and decimal phase IDs uniformly.
Emit a dedicated `Plan X: unresolved depends_on reference 'NN' — no
matching plan in phase` warning whenever a dep fails all three lookup
forms, so a dropped edge can no longer hide behind the wave-mismatch
warning.

Regression coverage added in `sdk/src/query/phase.test.ts` for the
decimal-phase short-form case, the integer-phase short-form case, and
the unresolved-reference warning.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
 2026-05-14 08:28:11 -04:00