msd-core/docs/INVENTORY.md

GSD Shipped Surface Inventory

Authoritative roster of every shipped GSD surface: commands, agents, workflows, references, CLI modules, and hooks. Where the broad docs (AGENTS.md, COMMANDS.md, ARCHITECTURE.md, CLI-TOOLS.md) diverge from the filesystem, treat this file and the repository tree itself as the source of truth.

How To Use This File

• The machine-readable roster lives in docs/INVENTORY-MANIFEST.json (regenerated by scripts/gen-inventory-manifest.cjs --write). For live counts, run ls agents/gsd-*.md | wc -l etc. against the checkout.
• This file enumerates every shipped surface across all six families (agents, commands, workflows, references, CLI modules, hooks). Broad docs may render narrative or curated subsets; when they disagree with the filesystem, this file and the directory listings are authoritative.
• New surfaces should land here first, then propagate to the broad docs. tests/inventory-manifest-sync.test.cjs anchors both halves: the manifest against the filesystem, and this file's rows against the manifest (#3762). The second half cannot be regenerated — a role sentence is hand-written by design, so re-running gen-inventory-manifest.cjs never clears it.

This is the authoritative roster of every shipped GSD Core surface. See the docs index to navigate by topic.

---

Agents

Full roster at agents/gsd-*.md. The "Primary doc" column flags whether docs/AGENTS.md carries a full role card (primary), a short stub in the "Advanced and Specialized Agents" section (advanced stub), or no coverage (inventory only).

Agent	Role (one line)	Spawned by	Primary doc
gsd-project-researcher	Researches domain ecosystem before roadmap creation (stack, features, architecture, pitfalls).	/gsd-new-project, /gsd-new-milestone	primary
gsd-phase-researcher	Researches implementation approach for a specific phase before planning.	/gsd-plan-phase	primary
gsd-ui-researcher	Produces UI design contracts for frontend phases.	/gsd-ui-phase	primary
gsd-assumptions-analyzer	Produces evidence-backed assumptions for discuss-phase (assumptions mode).	discuss-phase-assumptions workflow	primary
gsd-advisor-researcher	Researches a single gray-area decision during discuss-phase advisor mode.	discuss-phase workflow (advisor mode)	primary
gsd-research-synthesizer	Combines parallel researcher outputs into a unified SUMMARY.md.	/gsd-new-project	primary
gsd-planner	Creates executable phase plans with task breakdown and goal-backward verification.	/gsd-plan-phase, /gsd-quick	primary
gsd-roadmapper	Creates project roadmaps with phase breakdown and requirement mapping.	/gsd-new-project	primary
gsd-executor	Executes GSD plans with atomic commits and deviation handling.	/gsd-execute-phase, /gsd-quick	primary
gsd-plan-checker	Verifies plans will achieve phase goals (8 verification dimensions).	/gsd-plan-phase (verification loop)	primary
gsd-integration-checker	Verifies cross-phase integration and end-to-end flows.	/gsd-audit-milestone	primary
gsd-ui-checker	Validates UI-SPEC.md design contracts against quality dimensions.	/gsd-ui-phase (validation loop)	primary
gsd-verifier	Verifies phase goal achievement through goal-backward analysis.	/gsd-execute-phase	primary
gsd-nyquist-auditor	Fills Nyquist validation gaps by generating tests.	/gsd-validate-phase	primary
gsd-ui-auditor	Retroactive 6-pillar visual audit of implemented frontend code.	/gsd-ui-review	primary
gsd-dom-verifier	Observes a live DOM and reports which of a wave's stated UI acceptance criteria hold. Additive; never blocks.	execute:wave:post step hook (live-dom-uat capability)	primary
gsd-codebase-mapper	Explores codebase and writes structured analysis documents.	/gsd-map-codebase	primary
gsd-debugger	Investigates bugs using scientific method with persistent state.	/gsd-debug, /gsd-verify-work	primary
gsd-user-profiler	Scores developer behavior across 8 dimensions.	/gsd-profile-user	primary
gsd-doc-writer	Writes and updates project documentation.	/gsd-docs-update	primary
gsd-doc-verifier	Verifies factual claims in generated documentation.	/gsd-docs-update	primary
gsd-security-auditor	Verifies threat mitigations from PLAN.md threat model.	/gsd-secure-phase	primary
gsd-pattern-mapper	Maps new files to closest existing analogs; writes PATTERNS.md for the planner.	/gsd-plan-phase (between research and planning)	advanced stub
gsd-debug-session-manager	Runs the full /gsd-debug checkpoint-and-continuation loop in isolated context so main stays lean.	/gsd-debug	advanced stub
gsd-code-reviewer	Reviews source files for bugs, security issues, and code-quality problems; produces REVIEW.md.	/gsd-code-review	advanced stub
gsd-code-fixer	Applies fixes to REVIEW.md findings with atomic per-fix commits; produces REVIEW-FIX.md.	/gsd-code-review --fix	advanced stub
gsd-ai-researcher	Researches a chosen AI framework's official docs into implementation-ready guidance (AI-SPEC.md §3–§4b).	/gsd-ai-integration-phase	advanced stub
gsd-domain-researcher	Surfaces domain-expert evaluation criteria and failure modes for an AI system (AI-SPEC.md §1b).	/gsd-ai-integration-phase	advanced stub
gsd-eval-planner	Designs structured evaluation strategy for an AI phase (AI-SPEC.md §5–§7).	/gsd-ai-integration-phase	advanced stub
gsd-eval-auditor	Retroactive audit of an AI phase's evaluation coverage; produces EVAL-REVIEW.md (COVERED/PARTIAL/MISSING).	/gsd-eval-review	advanced stub
gsd-framework-selector	≤6-question interactive decision matrix that scores and recommends an AI/LLM framework.	/gsd-ai-integration-phase	advanced stub
gsd-intel-updater	Writes structured intel files (.planning/intel/*.json) used as a queryable codebase knowledge base.	/gsd-map-codebase --query	advanced stub
gsd-doc-classifier	Classifies a single planning document as ADR, PRD, SPEC, DOC, or UNKNOWN; spawned in parallel to process the doc corpus.	/gsd-ingest-docs	advanced stub
gsd-doc-synthesizer	Synthesizes classified planning docs into a single consolidated context with precedence rules, cycle detection, and three-bucket conflicts report.	/gsd-ingest-docs	advanced stub
gsd-mempalace-curator	Ship-time MemPalace curation — diary entry, cross-project tunnel proposals, wing-scoped sync pruning, and extract-learnings → KG mirroring with provenance.	MemPalace capability at ship:post	advanced stub

Coverage note. docs/AGENTS.md gives full role cards for the primary agents plus concise stubs for the advanced agents. The Agent Tool Permissions Summary in that file covers only the primary agents; the advanced agents' tool lists are captured in their per-agent frontmatter in agents/gsd-*.md.

---

Commands

Full roster at commands/gsd/*.md. The groupings below mirror docs/COMMANDS.md section order; each row carries the command name, a one-line role derived from the command's frontmatter description:, and a link to the source file. tests/command-count-sync.test.cjs locks the count against the filesystem.

Namespace Meta-Skills

These six routers are descriptor-only entries that the model picks first; the body of each contains a routing table that points at the correct concrete sub-skill. They exist to keep the eager skill-listing token cost low while the full surface remains reachable. See #2792 for the rationale; the routing tables target the post-#2790 consolidated surface.

Command	Role	Source
/gsd-workflow	Phase pipeline router — discuss / plan / execute / verify / phase / progress / next.	commands/gsd/ns-workflow.md
/gsd-project	Project lifecycle router — milestones, audits, summary.	commands/gsd/ns-project.md
/gsd-quality	Quality-gate router — code review, debug, audit, security, eval, ui.	commands/gsd/ns-review.md
/gsd-context	Codebase-intelligence router — map, graphify, docs, learnings.	commands/gsd/ns-context.md
/gsd-manage	Management router — config, workspace, workstreams, thread, update, ship, inbox.	commands/gsd/ns-manage.md
/gsd-ideate	Exploration & capture router — explore, sketch, spike, spec, capture.	commands/gsd/ns-ideate.md

Core Workflow

Command	Role	Source
/gsd-new-project	Initialize a new project with deep context gathering and PROJECT.md.	commands/gsd/new-project.md
/gsd-onboard	Guide existing codebase onboarding through mapping, docs ingest, project setup, and onboarding summary.	commands/gsd/onboard.md
/gsd-workspace	Manage GSD workspaces — create (--new), list (--list), or remove (--remove) isolated workspace environments.	commands/gsd/workspace.md
/gsd-discuss-phase	Gather phase context through adaptive questioning before planning.	commands/gsd/discuss-phase.md
/gsd-mvp-phase	Plan a phase as a vertical MVP slice — user story, SPIDR splitting, then plan-phase.	commands/gsd/mvp-phase.md
/gsd-spec-phase	Socratic spec refinement producing a SPEC.md with falsifiable requirements.	commands/gsd/spec-phase.md
/gsd-ui-phase	Generate UI design contract (UI-SPEC.md) for frontend phases.	commands/gsd/ui-phase.md
/gsd-ai-integration-phase	Generate AI design contract (AI-SPEC.md) via framework selection, research, and eval planning.	commands/gsd/ai-integration-phase.md
/gsd-plan-phase	Create detailed phase plan (PLAN.md) with verification loop.	commands/gsd/plan-phase.md
/gsd-plan-review-convergence	Cross-AI plan convergence loop — replan with review feedback until no HIGH concerns or actionable non-HIGH findings remain (max 3 cycles).	commands/gsd/plan-review-convergence.md
/gsd-ultraplan-phase	[BETA] Offload plan phase to Claude Code's ultraplan cloud — drafts remotely, review in browser, import back via /gsd-import. Claude Code only.	commands/gsd/ultraplan-phase.md
/gsd-spike	Rapidly spike an idea with throwaway experiments; use --wrap-up to package findings as a persistent skill.	commands/gsd/spike.md
/gsd-sketch	Rapidly sketch UI/design ideas using throwaway HTML mockups; use --wrap-up to package findings.	commands/gsd/sketch.md
/gsd-execute-phase	Execute all plans in a phase with wave-based parallelization.	commands/gsd/execute-phase.md
/gsd-verify-work	Validate built features through conversational UAT with auto-diagnosis.	commands/gsd/verify-work.md
/gsd-ship	Create PR, run review, and prepare for merge after verification.	commands/gsd/ship.md
/gsd-fast	Execute a trivial task inline — no subagents, no planning overhead.	commands/gsd/fast.md
/gsd-quick	Execute a quick task with GSD guarantees (atomic commits, state tracking) but skip optional agents.	commands/gsd/quick.md
/gsd-ui-review	Retroactive 6-pillar visual audit of implemented frontend code.	commands/gsd/ui-review.md
/gsd-code-review	Review source files changed during a phase for bugs, security, and code-quality problems; use --fix to auto-apply findings.	commands/gsd/code-review.md
/gsd-eval-review	Retroactively audit an executed AI phase's evaluation coverage; produces EVAL-REVIEW.md.	commands/gsd/eval-review.md

Phase & Milestone Management

Command	Role	Source
/gsd-phase	CRUD for phases — add (default), insert (--insert), remove (--remove), or edit (--edit) phases in ROADMAP.md.	commands/gsd/phase.md
/gsd-add-tests	Generate tests for a completed phase based on UAT criteria and implementation.	commands/gsd/add-tests.md
/gsd-validate-phase	Retroactively audit and fill Nyquist validation gaps for a completed phase.	commands/gsd/validate-phase.md
/gsd-secure-phase	Retroactively verify threat mitigations for a completed phase.	commands/gsd/secure-phase.md
/gsd-audit-milestone	Audit milestone completion against original intent before archiving.	commands/gsd/audit-milestone.md
/gsd-audit-uat	Cross-phase audit of all outstanding UAT and verification items.	commands/gsd/audit-uat.md
/gsd-audit-fix	Autonomous audit-to-fix pipeline — find issues, classify, fix, test, commit.	commands/gsd/audit-fix.md
/gsd-complete-milestone	Archive completed milestone and prepare for next version.	commands/gsd/complete-milestone.md
/gsd-new-milestone	Start a new milestone cycle — update PROJECT.md and route to requirements.	commands/gsd/new-milestone.md
/gsd-milestone-summary	Generate a comprehensive project summary from milestone artifacts.	commands/gsd/milestone-summary.md
/gsd-cleanup	Archive accumulated phase directories from completed milestones.	commands/gsd/cleanup.md
/gsd-manager	Interactive command center for managing multiple phases from one terminal.	commands/gsd/manager.md
/gsd-workstreams	Manage parallel workstreams — list, create, switch, status, progress, complete, resume.	commands/gsd/workstreams.md
/gsd-autonomous	Run all remaining phases autonomously — discuss → plan → execute per phase.	commands/gsd/autonomous.md
/gsd-undo	Safe git revert — roll back phase or plan commits using the phase manifest.	commands/gsd/undo.md

Session & Navigation

Command	Role	Source
/gsd-next	State-aware smart-entry launcher — reads project state, shows a contextual menu, and dispatches one existing GSD command.	commands/gsd/next.md
/gsd-progress	Check project progress, show context, and route to next action; use --next to advance automatically or --do to run a freeform task.	commands/gsd/progress.md
/gsd-capture	Capture ideas, tasks, notes, and seeds — todo (default), --note, --backlog, --seed, or --list pending todos.	commands/gsd/capture.md
/gsd-stats	Display project statistics — phases, plans, requirements, git metrics, timeline.	commands/gsd/stats.md
/gsd-pause-work	Create context handoff when pausing work mid-phase.	commands/gsd/pause-work.md
/gsd-resume-work	Resume work from previous session with full context restoration.	commands/gsd/resume-work.md
/gsd-explore	Socratic ideation and idea routing — think through ideas before committing.	commands/gsd/explore.md
/gsd-review-backlog	Review and promote backlog items to active milestone.	commands/gsd/review-backlog.md
/gsd-thread	Manage persistent context threads for cross-session work.	commands/gsd/thread.md

Codebase Intelligence

Command	Role	Source
/gsd-map-codebase	Analyze codebase with parallel mapper agents; use --fast for lightweight scan or --query for intel queries.	commands/gsd/map-codebase.md
/gsd-graphify	Build, query, and inspect the project knowledge graph in .planning/graphs/.	commands/gsd/graphify.md
/gsd-extract-learnings	Extract decisions, lessons, patterns, and surprises from completed phase artifacts.	commands/gsd/extract-learnings.md
/gsd-mempalace-recall	Recall prior decisions, patterns, and surprises from MemPalace into MEMORY-RECALL.md before planning.	commands/gsd/mempalace-recall.md
/gsd-mempalace-capture	File a phase artifact (CONTEXT/PLAN/SUMMARY) verbatim into MemPalace and mirror decision facts into its temporal KG.	commands/gsd/mempalace-capture.md

Review, Debug & Recovery

Command	Role	Source
/gsd-review	Request cross-AI peer review of phase plans from external AI CLIs.	commands/gsd/review.md
/gsd-debug	Systematic debugging with persistent state across context resets.	commands/gsd/debug.md
/gsd-forensics	Post-mortem investigation for failed GSD workflows — analyzes git, artifacts, state.	commands/gsd/forensics.md
/gsd-health	Diagnose planning directory health and optionally repair issues.	commands/gsd/health.md
/gsd-import	Ingest external plans with conflict detection against project decisions.	commands/gsd/import.md
/gsd-inbox	Triage and review all open GitHub issues and PRs against project templates.	commands/gsd/inbox.md

Docs, Profile & Utilities

Command	Role	Source
/gsd-docs-update	Generate or update project documentation verified against the codebase.	commands/gsd/docs-update.md
/gsd-ingest-docs	Scan a repo for mixed ADRs/PRDs/SPECs/DOCs and bootstrap or merge the full .planning/ setup with classification, synthesis, and conflicts report.	commands/gsd/ingest-docs.md
/gsd-profile-user	Generate developer behavioral profile and Claude-discoverable artifacts.	commands/gsd/profile-user.md
/gsd-settings	Configure GSD workflow toggles and model profile.	commands/gsd/settings.md
/gsd-config	Configure GSD settings — workflow toggles (default), advanced knobs (--advanced), integrations (--integrations), or model profile (--profile).	commands/gsd/config.md
/gsd-pr-branch	Create a clean PR branch by filtering out .planning/ commits.	commands/gsd/pr-branch.md
/gsd-surface	Toggle which skills are surfaced — apply a profile, list, or disable a cluster without reinstall.	commands/gsd/surface.md
/gsd-update	Update GSD to latest version; use --sync to sync skills across runtimes or --reapply to reapply local patches.	commands/gsd/update.md
/gsd-help	Show available GSD commands and usage guide.	commands/gsd/help.md

---

Workflows

Full roster at gsd-core/workflows/*.md. Workflows are thin orchestrators that commands reference internally; most are not read directly by end users. Rows below map each workflow file to its role (derived from the <purpose> block) and, where applicable, to the command that invokes it.

Workflow	Role	Invoked by
add-backlog.md	Add a backlog item to ROADMAP.md using 999.x numbering.	/gsd-capture --backlog
add-phase.md	Add a new integer phase to the end of the current milestone in the roadmap.	/gsd-phase (default)
add-tests.md	Generate unit and E2E tests for a completed phase based on its artifacts.	/gsd-add-tests
add-todo.md	Capture an idea or task that surfaces during a session as a structured todo.	/gsd-capture (default)
ai-integration-phase.md	Orchestrate framework selection → AI research → domain research → eval planning into AI-SPEC.md.	/gsd-ai-integration-phase
analyze-dependencies.md	Analyze ROADMAP.md phases for file overlap and semantic dependencies; suggest Depends on edges.	/gsd-manager --analyze-deps
audit-fix.md	Autonomous audit-to-fix pipeline — run audit, parse, classify, fix, test, commit.	/gsd-audit-fix
audit-milestone.md	Verify milestone met its definition of done by aggregating phase verifications.	/gsd-audit-milestone
audit-uat.md	Cross-phase audit of UAT and verification files; produces prioritized outstanding-items list.	/gsd-audit-uat
autonomous.md	Drive milestone phases autonomously — all remaining, a range, or a single phase.	/gsd-autonomous
check-todos.md	List pending todos, allow selection, load context, and route to the appropriate action.	/gsd-capture --list
cleanup.md	Archive accumulated phase directories from completed milestones.	/gsd-cleanup
code-review-fix.md	Auto-fix issues from REVIEW.md via gsd-code-fixer with per-fix atomic commits.	/gsd-code-review --fix
code-review.md	Review phase source changes via gsd-code-reviewer; produces REVIEW.md.	/gsd-code-review
complete-milestone.md	Mark a shipped version as complete — MILESTONES.md entry, PROJECT.md evolution, tag.	/gsd-complete-milestone
diagnose-issues.md	Orchestrate parallel debug agents to investigate UAT gaps and find root causes.	/gsd-verify-work (auto-diagnosis)
discuss-phase-assumptions.md	Assumptions-mode discuss — extract implementation decisions via codebase-first analysis.	/gsd-discuss-phase (when discuss_mode=assumptions)
discuss-phase-power.md	Power-user discuss — pre-generate all questions into a JSON state file + HTML UI.	/gsd-discuss-phase --power
discuss-phase.md	Extract implementation decisions through iterative gray-area discussion.	/gsd-discuss-phase
mvp-phase.md	Plan a phase as a vertical MVP slice — user story, SPIDR splitting, then plan-phase.	/gsd-mvp-phase
do.md	Route freeform text from the user to the best matching GSD command.	/gsd-progress --do
docs-update.md	Generate, update, and verify canonical and hand-written project documentation.	/gsd-docs-update
edit-phase.md	Edit any field of an existing phase in ROADMAP.md in place, preserving number and position.	/gsd-phase --edit
eval-review.md	Retroactive audit of an implemented AI phase's evaluation coverage.	/gsd-eval-review
execute-phase.md	Execute all plans in a phase using wave-based parallel execution.	/gsd-execute-phase
execute-plan.md	Execute a phase prompt (PLAN.md) and create the outcome summary (SUMMARY.md).	execute-phase.md (per-plan subagent)
explore.md	Socratic ideation — guide the developer through probing questions.	/gsd-explore
debug.md	Systematic debugging — subcommand routing, session creation, delegation to gsd-debug-session-manager.	/gsd-debug
extract-learnings.md	Extract decisions, lessons, patterns, and surprises from completed phase artifacts.	/gsd-extract-learnings
fast.md	Execute a trivial task inline without subagent overhead.	/gsd-fast
forensics.md	Forensics investigation of failed workflows — git, artifacts, and state analysis.	/gsd-forensics
graduation.md	Cluster recurring LEARNINGS.md items across phases and surface HITL promotion candidates.	transition.md (graduation_scan step)
health.md	Validate .planning/ directory integrity and report actionable issues.	/gsd-health
help.md	Display the complete GSD Core command reference.	/gsd-help
import.md	Ingest external plans with conflict detection against existing project decisions.	/gsd-import
inbox.md	Triage open GitHub issues and PRs against project contribution templates.	/gsd-inbox
ingest-docs.md	Scan a repo for mixed planning docs; classify, synthesize, and bootstrap or merge into .planning/ with a conflicts report.	/gsd-ingest-docs
insert-phase.md	Insert a decimal phase for urgent work discovered mid-milestone.	/gsd-phase --insert
list-phase-assumptions.md	Surface Claude's assumptions about a phase before planning.	/gsd-discuss-phase --assumptions
list-seeds.md	List and audit captured seeds (read-only), with optional status filter.	/gsd-capture --list-seeds
list-workspaces.md	List all GSD workspaces found in ~/gsd-workspaces/ with their status.	/gsd-workspace --list
manager.md	Interactive milestone command center — dashboard, inline discuss, background plan/execute.	/gsd-manager
map-codebase.md	Orchestrate parallel codebase mapper agents to produce .planning/codebase/ docs.	/gsd-map-codebase
milestone-summary.md	Milestone summary synthesis — onboarding and review artifact from milestone artifacts.	/gsd-milestone-summary
new-milestone.md	Start a new milestone cycle — load project context, gather goals, update PROJECT.md/STATE.md.	/gsd-new-milestone
new-project.md	Unified new-project flow — questioning, research (optional), requirements, roadmap.	/gsd-new-project
onboard.md	Brownfield onboarding orchestration — map codebase, ingest docs, initialize planning, summarize next step.	/gsd-onboard
new-workspace.md	Create an isolated workspace with repo worktrees/clones and an independent .planning/.	/gsd-workspace --new
next.md	Detect current project state and automatically advance to the next logical step.	/gsd-progress --next
node-repair.md	Autonomous repair operator for failed task verification; invoked by execute-plan.	execute-plan.md (recovery)
note.md	Zero-friction idea capture — one Write call, one confirmation line.	/gsd-capture --note
pause-work.md	Create structured .planning/HANDOFF.json and .continue-here.md handoff files.	/gsd-pause-work
plan-phase.md	Create executable PLAN.md files with integrated research and verification loop.	/gsd-plan-phase, /gsd-quick
plan-review-convergence.md	Cross-AI plan convergence loop — replan with review feedback until no HIGH concerns or actionable non-HIGH findings remain.	/gsd-plan-review-convergence
plant-seed.md	Capture a forward-looking idea as a structured seed file with trigger conditions.	/gsd-capture --seed
pr-branch.md	Create a clean branch for pull requests by filtering .planning/ commits.	/gsd-pr-branch
profile-user.md	Orchestrate the full developer profiling flow — consent, session scan, profile generation.	/gsd-profile-user
progress.md	Progress rendering — project context, position, and next-action routing.	/gsd-progress
quick.md	Quick-task execution with GSD guarantees (atomic commits, state tracking).	/gsd-quick
reapply-patches.md	Reapply local modifications after a GSD update.	/gsd-update --reapply
remove-phase.md	Remove a future phase from the roadmap and renumber subsequent phases.	/gsd-phase --remove
remove-workspace.md	Remove a GSD workspace and clean up worktrees.	/gsd-workspace --remove
resume-project.md	Resume work — restore full context from STATE.md, HANDOFF.json, and artifacts.	/gsd-resume-work
review.md	Cross-AI plan review via external CLIs; produces REVIEWS.md.	/gsd-review
scan.md	Rapid single-focus codebase scan — lightweight alternative to map-codebase.	/gsd-map-codebase --fast
secure-phase.md	Retroactive threat-mitigation audit for a completed phase.	/gsd-secure-phase
session-report.md	Session report — token usage, work summary, outcomes.	/gsd-pause-work --report
settings.md	Configure GSD workflow toggles and model profile.	/gsd-settings, /gsd-config --profile
settings-advanced.md	Configure GSD power-user knobs — plan bounce, timeouts, branch templates, cross-AI execution, runtime knobs.	/gsd-config --advanced
settings-integrations.md	Configure third-party API keys (Brave/Firecrawl/Exa), review.models.<cli> CLI routing, and agent_skills.<agent-type> injection with masked (****<last-4>) display.	/gsd-config --integrations
ship.md	Create PR, run review, and prepare for merge after verification.	/gsd-ship
sketch.md	Explore design directions through throwaway HTML mockups with 2-3 variants per sketch.	/gsd-sketch
sketch-wrap-up.md	Curate sketch findings and package them as a persistent sketch-findings-[project] skill.	/gsd-sketch --wrap-up
smart-entry.md	State-aware front door — classify the current project situation, present the matching menu, and dispatch exactly one existing GSD command (ADR-1787).	/gsd-next
spec-phase.md	Socratic spec refinement with ambiguity scoring; produces SPEC.md.	/gsd-spec-phase
spike.md	Rapid feasibility validation through focused, throwaway experiments.	/gsd-spike
spike-wrap-up.md	Curate spike findings and package them as a persistent spike-findings-[project] skill.	/gsd-spike --wrap-up
stats.md	Project statistics rendering — phases, plans, requirements, git metrics.	/gsd-stats
sync-skills.md	Cross-runtime GSD skill sync — diff and apply gsd-* skill directories across runtime roots.	/gsd-update --sync
transition.md	Phase-boundary transition workflow — workstream checks, state advancement.	execute-phase.md, /gsd-progress --next
ui-phase.md	Generate UI-SPEC.md design contract via gsd-ui-researcher.	/gsd-ui-phase
ui-review.md	Retroactive 6-pillar visual audit via gsd-ui-auditor.	/gsd-ui-review
ultraplan-phase.md	[BETA] Offload planning to Claude Code's ultraplan cloud; drafts remotely and imports back via /gsd-import.	/gsd-ultraplan-phase
undo.md	Safe git revert — phase or plan commits using the phase manifest.	/gsd-undo
thread.md	Create, list, close, or resume persistent context threads for cross-session work.	/gsd-thread
update.md	Update GSD to latest version with changelog display.	/gsd-update
validate-phase.md	Retroactively audit and fill Nyquist validation gaps for a completed phase.	/gsd-validate-phase
verify-work.md	Conversational UAT with auto-diagnosis — produces UAT.md and fix plans.	/gsd-verify-work

Note: Some workflows have no direct user-facing command (e.g. execute-plan.md, transition.md, node-repair.md, diagnose-issues.md) — they are invoked internally by orchestrator workflows. (The former verify-phase workflow — goal-backward verification with no loader of its own — was deleted in #1892; its still-live gates moved to references/verifier-phase-gates.md behind gsd-verifier.)

Workflow Sub-Files

A workflow may own two kinds of sub-file. Both live under gsd-core/workflows/<workflow>/ and neither is separately invocable — the parent workflow reaches them.

Subdirectory	What it holds	Manifest family	Roster
<workflow>/steps/*.md	Gated section bodies extracted by the fragment model (ADR-1671, epic #1671 Phases 6.1–6.3). The parent carries a section_manifest-gated stub; gsd-core/workflows/section-manifest.json names which step a given invocation reads.	workflow_steps	See docs/INVENTORY-MANIFEST.json for the authoritative per-file list
<workflow>/modes/*.md	Progressive-disclosure mode files (#717). The parent dispatches to exactly one; discuss-phase/modes/ is the canonical example.	workflow_modes	discuss-phase, help

Both families are keyed by <workflow>/<subdir>/<file>.md rather than a bare filename, because two workflows may each own a step of the same name — families.workflows uses bare basenames and cannot represent these without collision.

Adding a step or mode file requires no hand-written row here. Run node scripts/gen-inventory-manifest.cjs --write (after build:lib) and the manifest picks it up; tests/inventory-manifest-sync.test.cjs fails if you forget. The per-file roster deliberately lives in docs/INVENTORY-MANIFEST.json rather than being duplicated in this table — 60 rows that must be hand-maintained in lockstep with a generated artifact is the drift this file exists to catch.

---

References

Full roster at gsd-core/references/*.md. References are shared knowledge documents that workflows and agents @-reference. The groupings below match docs/ARCHITECTURE.md — core, workflow, thinking-model clusters, and the modular planner decomposition.

Core References

Reference	Role
checkpoints.md	Checkpoint type definitions and interaction patterns.
gates.md	4 canonical gate types (Confirm, Quality, Safety, Transition) wired into plan-checker and verifier.
model-profiles.md	Per-agent model tier assignments.
model-profile-resolution.md	Model resolution algorithm documentation.
verification-patterns.md	How to verify different artifact types.
verification-overrides.md	Per-artifact verification override rules.
verifier-phase-gates.md	Verifier-time gates eagerly imported by gsd-verifier (migrated from the retired verify-phase workflow, #1892): decision-coverage validation (#2492), test-quality audit, and infrastructure-phase human-verification scoping (#2504).
planning-config.md	Full config schema and behavior.
security-asvs-levels.md	OWASP ASVS level definitions for GSD threat modeling — per-level planner disposition rigor and auditor verification depth (L1 opportunistic, L2 standard, L3 comprehensive).
git-integration.md	Git commit, branching, and history patterns.
git-planning-commit.md	Planning directory commit conventions.
questioning.md	Dream-extraction philosophy for project initialization.
tdd.md	Test-driven development integration patterns.
ui-brand.md	Visual output formatting patterns.
common-bug-patterns.md	Common bug patterns for code review and verification.
debugger-philosophy.md	Evergreen debugging disciplines loaded by gsd-debugger.
debugger-fix-acceptance.md	Multi-signal fix-acceptance guardrail (anti-overfitting) loaded by gsd-debugger.
debugger-sbfl.md	Spectrum-based fault localization (Ochiai) pre-filter loaded by gsd-debugger.
debugger-rca-branching.md	RCA branching (fishbone + AND-gate) anti-single-cause discipline loaded by gsd-debugger.
debugger-bug-taxonomy.md	Bug-taxonomy classification (Bohrbug/Heisenbug/Concurrency) + technique routing table loaded by gsd-debugger.
debugger-repro-hardening.md	Regression-test hardening (PBT shrinking + oracle classification + boundary neighbors) loaded by gsd-debugger.
debugger-prevention.md	Prevention / blameless-postmortem output (5-Whys + why-not-caught + recurrence guard) loaded by gsd-debugger.
debugger-semantic-recall.md	Semantic knowledge-base recall via MemPalace (keyword-fallback) loaded by gsd-debugger.
debugger-techniques.md	Full step-by-step bodies for the 10 debugging techniques (binary search, delta debugging, git bisect, …) routed by gsd-debugger's technique-selection table.
verifier-wiring-patterns.md	Data-flow trace procedure and the four wiring patterns (Component→API, API→Database, Form→Handler, State→Render) loaded by gsd-verifier.
mandatory-initial-read.md	Shared required-reading boilerplate injected into agent prompts.
gsd-run-resolver.md	Canonical gsd_run bootstrap resolver block; workflows reference this file instead of copying the shell probe.
agent-skills-bootstrap.md	Shared agent_skills self-load contract (query + Read + dedup guard) injected into all 22 consumer agents.
project-skills-discovery.md	Shared project-skills-discovery boilerplate injected into agent prompts.
research-documentation-lookup.md	Shared documentation-lookup protocol (Context7 MCP + guarded CLI fallback) injected into all researcher agents.
research-philosophy.md	Shared research philosophy (training-as-hypothesis, honest reporting, investigation-not-confirmation) injected into researcher agents.
research-verification-protocol.md	Shared research verification protocol (4 pitfalls + pre-submission checklist) injected into researcher agents.
verify-command-path-resolvability.md	Verify Command Path Resolvability dimension (#2401) loaded by gsd-plan-checker: how to consume the {VERIFY_PATHS} probe result (never re-run or hand-reason the filesystem), the severity/reason table, and report-never-prescribe rules.
nyquist-compliance.md	Dimension 8 checks 8a-8e (#3172) loaded by gsd-plan-checker: the VALIDATION.md gate, automated-verify presence, feedback-latency assessment, sampling continuity, Wave 0 completeness, and the Dimension 8 output table — extracted from the agent to stay under its LARGE size cap.
failing-direction.md	Check 8f, Stated Failing Direction (#3172), loaded by gsd-plan-checker: how to consume the {FAILING_DIRECTIONS} probe result, the status/severity table, the sentinel exemption, and the split between deterministic blockers and advisory vacuous-statement warnings.

Workflow References

Reference	Role
agent-contracts.md	Formal interface between orchestrators and agents.
context-budget.md	Context window budget allocation rules.
execute-phase-context-guard.md	Context exhaustion guard step for execute-phase wave loop — workflow.context_guard_mode dispatch table (warn/auto/off) and POOR-tier pause-work trigger (#1452).
execute-phase-requirement-revert.md	Gap-report step for execute-phase — reverts this phase's own shared requirement IDs out of Complete in REQUIREMENTS.md before rendering a gaps_found report, scoped to PHASE_REQ_IDS so other phases' rows are untouched (#2388).
execute-phase-response-language.md	Response-language directive for execute-phase orchestrator output (questions, narration, report-template prose); extracted to keep the workflow under the frozen pre-phase-6 byte ceiling (#2402).
execute-phase-quota-recovery.md	Step 7.1 detail for execute-phase — quota-exceeded recovery: the opt-in dynamic_routing.provider_escalation ladder (swap provider, honor Retry-After, fail loudly when spent) and the default manual wait-for-reset prompt (#2296).
execute-phase-between-wave-reset.md	Between-wave manifest reset and worktree base refresh for waves 2+, plus the pre-wave cross-plan key-links dependency check (#1369).
execute-phase-wave-guard.md	Inter-wave worktree base re-check for wave N+1 — the harness caches the fork base, so a fresh worktree would otherwise be cut from the stale pre-wave base (#1369, #2652).
offer-next.md	The offer_next step body extracted from execute-phase.md — auto-advance routing and the no-transition check (#2537).
continuation-format.md	Session continuation/resume format.
domain-probes.md	Domain-specific probing questions for discuss-phase.
edge-probe.md	Spec-phase edge-completeness probe — 8-category edge taxonomy, shape classification, and the requirements → checks → verifier resolution model (Step 5.5).
prohibition-probe.md	Spec-phase prohibition-completeness probe — the two-stage adversarial-recall → precision protocol that surfaces the unwritten must-NOT constraints (values/safety/ethics), with status×verification (test/judgment) tiering and canon-referral breadcrumbs (Step 5.6); second adapter of the probe-core resolution model.
ui-consideration-probe.md	UI-phase state-completeness probe — the closed shape-rooted UI-state taxonomy (empty/loading/error/populated/partial/overflow/zero-one-many/long-text), element-cue relevance filter, and {explicit, backstop} tiering; third adapter of the probe-core model (ADR-550 D7), run at ui-phase Step 9.5; the MIXED axis routes open UX (real-time/a11y/i18n-RTL) to domain-probes.md (#1867).
honest-verifier.md	Verify-time abstention on non-inferable (backstop) truths — the truth-axis mirror of the prohibition judgment-tier disposition (ADR-550 D4): a backstop truth the verifier can't confirm with explicit evidence abstains → human_needed (reason insufficient_spec), never a silent pass (#1154).
gate-prompts.md	Gate/checkpoint prompt templates.
loop-hook-dispatch.md	Generic dispatch contract for consuming gsd_run loop render-hooks <point> --raw output in any host-loop workflow — envelope shape, per-kind dispatch rules (contribution/step/gate), and liveness banner.
scout-codebase.md	Phase-type→codebase-map selection table for discuss-phase scout step (extracted via the discuss-phase/modes progressive-disclosure split, #717).
revision-loop.md	Plan revision iteration patterns.
reviewer-instances.md	Custom reviewer instances for /gsd-review (#1517) — same-adapter multi-model review: config shape, resolution rules, invocation, and the REVIEWS.md contract. Lazily loaded by review.md when review.reviewer_instances is configured.
universal-anti-patterns.md	Universal anti-patterns to detect and avoid.
worktree-branch-check.md	Canonical spawn-time worktree HEAD/base guard (worktree_branch_check): verify-only and fail-closed — per-agent-branch assertion, protected-ref refusal (#2924), and an exact-base assertion that halts with exit 42 on mismatch so the orchestrator (worktree lifecycle owner) performs recovery (#48). Embedded into worktree sub-agent prompts at dispatch.
runtime-aware-dispatch.md	Runtime-aware subagent dispatch protocol (#2508 Phase 4 Option A): before any Agent(subagent_type="gsd-*") call, resolve the type via gsd_run query resolve-dispatch-type --requested <name> --raw. On named-dispatch runtimes (Claude/OpenCode/…) the name is returned unchanged; on built-in-only runtimes (kimi-code) it maps to coder/explore/plan by role-suffix. The persona rides ${AGENT_SKILLS_<ROLE>} (Phase 3) regardless. Documents why a PreToolUse-remap hook (the epic's original Option B) is infeasible — Kimi Code's hook API supports only allow/deny, not tool_input rewriting.
dispatch-isolation-gate.md	Canonical gate deciding whether a dispatch site may run an agent isolated (#2584/#2652): resolves ISOLATION from the negotiated dispatch.isolation capability — never from a runtime id — fails closed to none, resolves the host's declared harnessFlag instead of hardcoding Claude Code's isolation="worktree" literal, and degrades single-agent sites to sequential on orchestrator-worktree hosts. Read by quick.md, diagnose-issues.md, and execute-plan.md.
worktree-path-safety.md	Worktree guard suite: HEAD assertion, cwd-drift sentinel (step 0a, #3097), and absolute-path guard (step 0b, #3099) — loaded into executor spawn prompts via <execution_context>.
untrusted-input-boundary.md	Shared prompt-injection boundary (#1577) @-included by the 10 research/doc-ingest agents (gsd-project-researcher, gsd-phase-researcher, gsd-ui-researcher, gsd-assumptions-analyzer, gsd-advisor-researcher, gsd-doc-classifier, gsd-doc-synthesizer, gsd-research-synthesizer, gsd-ai-researcher, gsd-domain-researcher): treat fetched/read text as data-not-instructions, self-scan before use (PromptArmor 2507.15219), task-anchor (2504.20472), and fence quoted text with a fresh random delimiter per wrap (PPA 2506.05739). Prompt-level defense-in-depth (2503.00061); the hook scanner is a separate pattern pre-filter.
artifact-types.md	Planning artifact type definitions.
phase-argument-parsing.md	Phase argument parsing conventions.
decimal-phase-calculation.md	Decimal sub-phase numbering rules.
workstream-flag.md	Workstream active-pointer conventions (--ws).
user-profiling.md	User behavioral profiling detection heuristics.
thinking-partner.md	Conditional thinking-partner activation at decision points.
autonomous-smart-discuss.md	Smart-discuss logic for autonomous mode.
autonomous-ui-design-contract.md	Autonomous-mode step 3a.5 — resolve whether a frontend phase needs a UI-SPEC.md and generate one through active plan:pre hooks; always non-blocking.
ios-scaffold.md	iOS application scaffolding patterns.
ai-evals.md	AI evaluation design reference for /gsd-ai-integration-phase.
api-coverage.md	API-coverage gate reference (full-coverage-by-default) for the ai-integration capability's verify:pre blocking gate (#1562) — matrix format, trigger, tuning, detector CLI, and the seal-time outcome table naming every pass/block arm including scope_unavailable (#3909).
ai-frameworks.md	AI framework decision-matrix reference for gsd-framework-selector.
executor-examples.md	Worked examples for the gsd-executor agent.
doc-conflict-engine.md	Shared conflict-detection contract for ingest/import workflows.
execute-mvp-tdd.md	Runtime gate semantics for execute-phase under MVP+TDD — pre-task failing-test verification, end-of-phase blocking review.
mvp-concepts.md	Cross-reference index for the six MVP-related reference files; maps each file to its purpose and which workflow loads it.
verify-mvp-mode.md	UAT framing rules for MVP-mode phases — user-flow-first ordering, deferred technical checks, user-story-format guard.

Sketch References

References consumed by the /gsd-sketch workflow and its wrap-up companion.

Reference	Role
sketch-interactivity.md	Rules for making HTML sketches feel interactive and alive.
sketch-theme-system.md	Shared CSS theme variable system for cross-sketch consistency.
sketch-tooling.md	Floating toolbar utilities included in every sketch.
sketch-variant-patterns.md	Multi-variant HTML patterns (tabs, side-by-side, overlays).

Thinking-Model References

References for integrating thinking-class models (o3, o4-mini, Gemini 2.5 Pro) into GSD workflows.

Reference	Role
thinking-models-debug.md	Thinking-model patterns for debug workflows.
thinking-models-execution.md	Thinking-model patterns for execution agents.
thinking-models-planning.md	Thinking-model patterns for planning agents.
thinking-models-research.md	Thinking-model patterns for research agents.
thinking-models-verification.md	Thinking-model patterns for verification agents.

Modular Planner Decomposition

The gsd-planner agent is decomposed into a core agent plus reference modules to fit runtime character limits.

Reference	Role
planner-antipatterns.md	Planner anti-patterns and specificity examples.
planner-chunked.md	Chunked mode return formats (## OUTLINE COMPLETE, ## PLAN COMPLETE) for Windows stdio hang mitigation.
planner-gap-closure.md	Gap-closure mode behavior (reads VERIFICATION.md, targeted replanning).
planner-guidance.md	Expository planner guidance: philosophy, task types/sizing, interface-first ordering, user setup, dependency graph, granularity calibration, and structured-return templates.
planner-reviews.md	Cross-AI review integration (reads REVIEWS.md from /gsd-review).
planner-revision.md	Plan revision patterns for iterative refinement.
planner-source-audit.md	Planner source-audit and authority-limit rules.
planner-mvp-mode.md	Vertical-slice planning rules for MVP mode.
planner-preconditions.md	Emission rules for the optional <precondition> task element (issue #1949, Design by Contract): when to emit, the three cases (user_setup / prior-phase artifact / env-var), format, anti-patterns, and the contract triad mapping.
planner-reversibility.md	Canonical reversibility taxonomy for the optional <reversibility> task element (issue #1951): the three ratings (reversible / costly / one-way), the checkpoint:decision insertion rule for one-way doors, the --no-reversibility-gates override, and the checkpoint-fatigue anti-patterns.
planner-human-verify-mode.md	Rules for workflow.human_verify_mode = end-of-phase: suppress checkpoint:human-verify task emission and route deferred items via <verify><human-check>.
planner-graphify-auto-update.md	How load_graph_context surfaces .last-build-status.json auto-update state (running / failed / stale head) alongside the existing staleness annotation. Opt-in via graphify.auto_update (#3347).
planner-interface-context.md	Interface context rules for executors — how to extract key interfaces/types/exports from existing code and document new interfaces that downstream plans will consume.
planner-load-graph-context.md	Planner's load_graph_context step: knowledge-graph freshness + dependency-context query via the gsd_run launcher (extracted from gsd-planner.md).
planner-verify-command-grounding.md	Verify Command Grounding rules (#2401): inherit prior_verify_commands verbatim when the story repeats, prefer npm --prefix <dir> run <script> over cd <dir> && npm run <script>, and ground every authored path.
planner-failing-direction.md	Stated Failing Direction rules (#3172): every runnable <automated> carries a <fails_when> sibling naming an observable failure signal, the pairing and placeholder rules, the MISSING sentinel exemption, and the authoring test ("if this command were silently doing nothing, what would tell me?").
skeleton-template.md	SKELETON.md template emitted for new-project Walking Skeleton (Phase 1 + --mvp).
user-story-template.md	User story format for MVP planning — "As a / I want to / So that" structured fields.
specless-probe-fallback.md	Spec-less probe fallback protocol — gate (toggle + per-section absence via the shared spec-section helper), the deterministic edge probe (mirrors spec-phase 5.5), the in-planner prohibition recall, and the must_haves authoring lift; consumed by plan-phase step 7.95 when a phase SPEC omits ## Edge Coverage / ## Prohibitions (ADR-857 Phase 6).
spidr-splitting.md	SPIDR splitting decomposition rules for handling large user stories in MVP mode.

Subdirectory: gsd-core/references/few-shot-examples/ contains additional few-shot examples (plan-checker.md, verifier.md) that are referenced from specific agents. These are not among the top-level references.

---

CLI Modules

Full listing: gsd-core/bin/lib/*.cjs.

Module	Responsibility
installer-migrations/000-first-time-baseline.cjs	Installer migration: records the first-time installer migration baseline scan — walks per-runtime install surfaces so pre-existing files are classified before any later migration runs
installer-migrations/001-legacy-orphan-files.cjs	Installer migration: removes manifest-managed legacy orphan hook files (hooks/gsd-notify.sh, hooks/statusline.js)
installer-migrations/002-codex-legacy-hooks-json.cjs	Installer migration: removes legacy Codex hooks.json GSD hook registrations
installer-migrations/003-rename-get-shit-done-to-gsd-core.cjs	Installer migration: removes stale legacy get-shit-done/ runtime directory files after the rename to gsd-core/ (#604)
installer-migrations/004-prune-stale-pristine-snapshots.cjs	Installer migration: removes stale gsd-pristine/get-shit-done/ snapshot files left behind by the get-shit-done → gsd-core rename (#604, #934)
installer-migrations/005-opencode-baseline-commands-dir.cjs	Installer migration: baselines pre-existing OpenCode commands/ (plural) files missed by migration 000's RUNTIME_SURFACES list (#2329 follow-up)
installer-migrations/006-pi-extension-cjs-to-js.cjs	Installer migration: retires pi's stale extensions/gsd.cjs after #2470 renamed the installed native extension to extensions/gsd.js
installer-migrations/007-retire-config-root-commonjs-marker.cjs	Installer migration: retires the config-root {"type":"commonjs"} marker that pre-#2544 installs wrote over <configRoot>/package.json
installer-migrations/008-cursor-retire-commands-surface.cjs	Installer migration: retires Cursor's duplicate commands/ surface now that skills are the sole workflow surface (#2644)
installer-migrations/009-pi-retire-reserved-hooks-dir.cjs	Installer migration: retires pi's legacy hooks/ directory after GSD's shared hook bundle moved to gsd-hooks/ (#3023)
installer-migrations/010-antigravity-retire-confighome-artifacts.cjs	Installer migration: retires Antigravity's configHome skills//agents/ surfaces after the global layout moved to the ~/.gemini/config home override (#3738)
active-workstream-store.cjs	Workstream source precedence and selection (CLI --ws > GSD_WORKSTREAM env > stored pointer); name validation and environment propagation
adapter-declarative.cjs	Declarative host-integration adapter — projects workflow artifacts through the install engine for hosts that declare a descriptor-driven surface (#1680)
adapter-imperative.cjs	Imperative host-integration adapter — binds the composed capability registry in-process for hosts that drive emission themselves (#1680)
adr-parser.cjs	ADR decision parser for plan-phase ingest express path; normalizes section synonyms, parses status/decision/scope fences, and enforces status rejection gates
agent-command-router.cjs	Thin CJS subcommand router adapter for gsd-tools agent
agent-install-check.cjs	Agent-installation probe — owns getAgentsDir and checkAgentsInstalled, the single resolution the health-diagnostic agent-install rule consumes (ADR-857, #1268)
health-diagnostic-rules/agent-install.cjs	Health-diagnostic rule: agent-installation-completeness check (W010) — the single checkAgentsInstalled call site's four mutually exclusive conditions, ported behavior-preserving from cmdValidateHealth (ADR-3180 §8.2/§8.3/§8.5, Phase 11, #3309)
api-coverage.cjs	API-coverage detector + matrix validator (#1562, #2365) — pure detectApiIntegration (fail-closed: same-clause verb+noun signal + <Service> API/SDK surface naming a real service; strips fenced code, inline code, and path-shaped tokens; external hosts count, first-party route paths do not) and validateCoverageMatrix/parseCoverageMatrix/renderCoverageMatrix for the COVERAGE.md artifact (incl. the No external API integration: <reason> declaration); STDIN CLI (echo "$SCOPE" | node .../api-coverage.cjs [--json], exit 0=detected/1=none/NO_INPUT=empty-or-whitespace-only stdin/UNAVAILABLE=stdin read failed — registry codes, ADR-3889 Phase 3, #3907); consumed by the ai-integration capability's plan:pre contribution and blocking verify:pre gate (check api-coverage.verify-pre)
artifacts.cjs	Canonical artifact registry — known .planning/ root file names; used by gsd-health W019 lint
assumption-delta.cjs	Detects identity-model assumption transitions in phase text for discuss-phase assumptions mode (#1561); STDIN CLI (echo "$PHASE_SECTION" | node .../assumption-delta.cjs [--json], exit 0=detected/1=none/NO_INPUT=empty-or-whitespace-only stdin/UNAVAILABLE=stdin read failed — registry codes, ADR-3889 Phase 3, #3907)
audit-command-router.cjs	ADR-959 capability command router for gsd-tools audit-uat and gsd-tools audit-open — extracted from hardcoded cases in gsd-tools.cjs; dispatches to uat.cjs:cmdAuditUat and audit.cjs:{auditOpenArtifacts,formatAuditReport}; phase 4d-impl-3
audit.cjs	Audit dispatch, audit open sessions, audit storage helpers
capability-activation.cjs	Capability activation resolver shared by config validation and capability-state consumers — resolves registry-owned config keys from raw runtime config without re-centralizing migrated settings
capability-command-router.cjs	ADR-2346 P2 host command router for gsd-tools capability — relocated verbatim from the former 706-line case 'capability': arm in gsd-tools.cjs; dispatched via HOST_COMMAND_ROUTERS in runCommand's default case; wires capability-lifecycle/-trust/-consent/-state/-writer; hand-authored CJS (sibling of ensure-runtime-build.cjs)
capability-consent.cjs	User-owned capability consent store (#1459) — bounded, non-throwing JSON store at ${GSD_HOME||homedir()}/.gsd/consent.json (NEVER under a repo) keyed by ${realpath(projectRoot)} <id>; exports consentStorePath/readConsentStore/hasProjectConsent (matches iff integrity AND disclosureSignature both match)/recordProjectConsent (atomic+durable write)/revokeProjectConsent; the authoritative consent signal that gates PROJECT-scope third-party capability activation so a forged/cloned project ledger no longer activates anything until the user consents on THIS machine
capability-lock.cjs	Shared cross-process lock primitive (#1459 finding 4) — the SINGLE hardened lockfile protocol used by BOTH capability-lifecycle (.gsd/capabilities/.lock) and capability-consent (.consent.lock); exports acquireLock(lockPath, opts?)/releaseLock(handle) with pid + process-start-time liveness identity, a hard deadman, and token+inode owner-safe release — NEVER stale-steals a verified-live same-host holder, reclaims only a provably-dead/unverifiable holder, never deadlocks; opts.maxAttempts/opts.waitForFresh let the consent store serialize genuinely-contended writers; _setLockProbes/_resetLockProbes are test seams
capability-ledger.cjs	Per-runtime install ledger (ADR-1244 D4) — atomic read/write of .gsd-capabilities.json recording { id, version, source, integrity, files[], sharedEdits[] } per installed capability; exports readLedger/writeLedger/recordInstall/removeEntry/reconcile (orphan detection)/readSmallRegularFile (utf8) + readSmallRegularFileBuffer (raw bytes, the byte-exact consent-hash reader, #1459 finding 1); atomic commit point and reconciliation basis for Phase-4 upgrade/remove
capability-lifecycle.cjs	Capability lifecycle orchestration (ADR-1244 Phase 4, D5+D6) — composes the source resolver + ledger + trust gate into installCapability/upgradeCapability/removeCapability/reconcileCapabilities; ledger write is the commit point; upgrade is atomic stage-then-swap (old set aside, new swapped in, ledger committed, backup dropped) with deterministic crash recovery (reconcileCapabilities rolls forward/back to a fully-old-or-fully-new state); remove surgically strips only marker-stamped (_gsdCapability) shared-config entries, preserving user hand-edits; never executes capability code
capability-loader.cjs	Runtime Capability Registry overlay (ADR-1244 D2) — loadRegistry({ includeInstalled }) composes the frozen first-party registry with a validated installed overlay read from $GSD_HOME/.gsd/capabilities/<id>/ (global) and <projectRoot>/.gsd/capabilities/<id>/ (project); first-party-wins on id/skill/agent/config collisions, reserved-namespace rejection, load-time engines.gsd re-gate (skip-with-warning), and gate-kind fail-open via _overlay.blockedGates — a loud warning (stderr + envelope warnings) naming the load failure and gsd capability remove <id> remediation; no gate injected (#2009); composes through the canonical buildRegistry so derived views never drift
capability-registry.cjs	Generated central Capability Registry — role-partitioned index of all co-located capability declarations (capabilities/<id>/capability.json); emitted by scripts/gen-capability-registry.cjs --write (ADR-894 §5)
capability-source.cjs	Capability source resolver (ADR-1244 D3) — resolveCapabilitySource(spec, opts) fetches and stages a capability from local path, git (https/ssh/git transports only), npm pack (no lifecycle scripts), tarball (sha512 integrity verify before extraction), or registry (stub); tar-slip/symlink rejection; atomic staging to $GSD_HOME/.gsd/capabilities/<id>/; no capability code executes during install
capability-state.cjs	Unified capability-state resolver (ADR-857 phase 4b/6) — composes install profile, runtime surface, and config activation into one per-capability view consumed by workflow hook rendering; exports pure resolveCapabilityState, reusable resolveCapabilityRuntimeState, and I/O handler cmdCapabilityState; command surface: gsd-tools capability state [--config-dir <path>] emitting { runtimeConfigDir, capabilities[] }
capability-trust.cjs	Capability trust gate (ADR-1244 Phase 4, D5 + compatibility half of D6) — PURE policy module: discloseExecutableSurfaces (hooks/command modules/mcpServers), evaluateInstallTrust (compose source policy + reserved-namespace + engines gate + disclosure → allowed/requiresConsent/blockReasons), evaluateSourceAllowed (strict_known_registries: permissive/lockdown/host-allowlist), checkEngines (engines.gsd hard gate + compatVersions graceful-downgrade), executableSetChanged (auto-update re-consent trigger); no sandbox — see docs/explanation/capability-trust-model.md
capability-validator.cjs	Shared runtime-callable capability validator (ADR-1244 D2) — extracted from scripts/gen-capability-registry.cjs so the build-time generator and the runtime overlay loader share ONE validation implementation (generative-parity guarded); exports validateCapability/validateCrossCapability/validateVersionEnvelope/validateConsumesGlobal/… plus the closed-vocabulary sets and SEMVER_RE
broken-windows.cjs	Broken-windows ledger library (issue #1950) — typed IR + I/O for .planning/WINDOWS.md (cross-phase defect register); pure parseLedger/renderLedger/appendWindow/markWaived/markFixed/openCount + I/O cmdWindowsStatus/cmdWindowsAppend/cmdWindowsWaive/cmdWindowsMarkFixed; frozen REASON enum for typed-error assertions; CLI surface gsd-tools windows status|append|waive|fixed. Generated from src/broken-windows.cts
capability-writer.cjs	Capability State Writer (ADR-1213) — write-side inverse of the resolver; projects desired per-capability enabled/gates onto surface + config substrates, then re-resolves (assert-and-report); exports setCapabilityState and I/O handler cmdCapabilitySet; command surface: gsd-tools capability set <id> [--on|--off] [--gate <key>=<true|false>]
check-command-router.cjs	Thin CJS subcommand router adapter for gsd-tools check
claude-orchestration-command-router.cjs	ADR-959 capability command router for Claude orchestration — workflow-backend detection and emission (#1143)
claude-orchestration.cjs	Claude Orchestration capability (#1143) — Workflow-tool backend detection + emitter; detectWorkflowBackend fail-closed gate ({available, backend: 'workflow'|'inline', reason}, degrades to today's inline behavior unless every gate opens) and emitWorkflowScript (maps GSD's wave/plan model onto Workflow primitives: wave → sequential parallel() barriers, plan → agent(...) with per-plan worktree isolation mirroring the inline path). Pure, zero external dependencies, never throws; never invokes the Workflow tool itself
cli-exit.cjs	ExitError class and runMain() helper — CLI entrypoints throw ExitError instead of calling process.exit(); runMain() translates the outcome into process.exitCode so output flushes cleanly
cjs-command-router-adapter.cjs	Shared compatibility adapter for manifest-backed CJS command-family routers
cli-skew-check.cjs	Detects version skew when a stale global CLI shadows the project-local install (#1754)
host-integration-adapters/cline-sdk-binding.cjs	Cline SDK binding — pure AgentPlugin beforeTool planning-artifact guard and createAgentModel model-override resolution adapters, no @cline/sdk import (ADR-1239 Phase D, #2090)
clock.cjs	Injectable clock seam (now/sleep) for deterministic lock testing
clusters.cjs	Skill cluster definitions for the runtime surface module (ADR-0011 Phase 2)
code-review-depth.cjs	Pure resolver for a code review's depth tier (#2554); exports resolveCodeReviewDepth({ flagDepth, configDepth, overrides, files, repoRoot }) (→ { ok, depth, resolvedDepth, source, matchedRule, downgraded, fileCount } or { ok: false, errors }), the frozen REASON enum, DEPTH_TIERS, LARGE_SCOPE_THRESHOLD, and the matching primitives normalizeRelPath/ruleMatchesFile; resolves --depth= flag → strongest matching workflow.code_review_depth_overrides rule (segment-aware path prefix, no globs) → workflow.code_review_depth → standard, and owns the >50-file deep→standard downgrade
code-review-flags.cjs	Typed flag parser for /gsd-code-review; exports parseCodeReviewFlags(argv) (→ { fix, all, auto, depth, files }) and resolveCodeReviewWorkflow(flags) (→ 'code-review.md' | 'code-review-fix.md'); canonical dispatch seam for --fix/--all/--auto routing
codex-agent-toml.cjs	Typed IR (genuine leaf) for ~/.codex/agents/<agent>.toml — parseCodexAgentToml/renderCodexAgentToml round-trip byte-identically; stripModel/stripReasoningEffort remove exactly one targeted line; scanTomlLines/stripBOM/findDeveloperInstructionsBlockRange/unquoteTomlValue are the lenient reader primitives moved here from agent-install-check.cjs (#3242 Phase 2); consumed by the Codex .toml sync (commands.cjs cmdEffortSyncCodex, ADR-2313 D7, #3243)
command-aliases.cjs	Alias/subcommand metadata for manifest-backed family routers
commonjs-marker.cjs	Ownership-guarded {"type":"commonjs"} marker used to pin GSD's staged .js scripts to CommonJS; exports classifyMarker (absent/gsd-owned/foreign, fail-closed), ensureCommonJsMarker, and removeCommonJsMarker so install and uninstall share one predicate and never touch a user-authored package.json (#2544)
command-arg-projection.cjs	Strict, Result-returning flag and positional argument projection helpers shared across command-family routers — parseNamedArgs rejects unrecognized flags and stray positionals instead of silently dropping them (ADR-3473 §8.4, #3884). Generated from src/command-arg-projection.cts
command-roster.cjs	Read-only discovery of canonical commands/gsd/*.md command stems for runtime artifact conversion and namespace rewrites
command-routing-hub.cjs	Pure-result dispatch hub that centralizes mode decision (SDK vs CJS), error taxonomy, and no-throw contract for all command-family routers (#3788)
commands.cjs	Misc CLI commands (slug, timestamp, todos, scaffolding, stats)
complexity-trigger.cjs	Pure leaf for the complexity-triggered refactor capability — analyzer, evaluator, and baseline persistence; wrapped by refactor-trigger-command-router.cjs (#1953)
config-loader.cjs	Project config loading — defaults merge, legacy-key migration, workstream overlay, unknown-key/profile-override validation (extracted from core.cjs, ADR-857)
config-schema.cjs	Single source of truth for VALID_CONFIG_KEYS and dynamic key patterns; imported by both the validator and the config-schema-docs parity test
config-types.cjs	TypeScript type definitions for the model_policy config block — ModelPolicyConfig, TierEntry, RuntimeTiers; compiled from src/config-types.cts at publish time (ADR-457)
health-diagnostic-rules/config-validation.cjs	Health-diagnostic rules: config.json validation checks (W003, W004, W022, E005, W008, W012-W016), reading only snapshot.config, ported behavior-preserving from cmdValidateHealth (ADR-3180 §8.2/§8.3/§8.5, Phase 11, #3309)
config.cjs	config.json read/write, section initialization; imports validator from config-schema.cjs
configuration.cjs	Configuration Module — legacy-key normalization, defaults merge, and explicit on-disk migration; pure normalization primitives consumed by config-loader.cjs and config-schema.cjs (loadConfig extracted to config-loader per ADR-857 #885)
health-diagnostic-rules/consistency.cjs	Health-diagnostic rules for validate.consistency only (C001-C004: gap in disk phase numbering, gap in plan numbering within a phase, orphan SUMMARY with no matching live PLAN, PLAN missing wave frontmatter) — a new C0NN code namespace parallel to validate.health's E/W/I space, ported behavior-preserving from cmdValidateConsistency (ADR-3180 §8.4, Phase 12, #3310)
context-composer.cjs	Shared budget-composition seam (ADR-1671, #2929) — composeWithinBudget trims an ordered fragment list to a measured budget and returns a PLAN of surviving fragments, never rendered text, so one seam serves both the review pipeline and per-runtime emission. Closed strategy set: verbatim, head-shrink, proportional-truncate (with a per-fragment floor), drop. The budget unit is injected via measure(text) — tokens for prompt-budget, bytes for emission — with charsPerUnit as its inverse. Also exports headShrink/tailTruncate. Compiled from src/context-composer.cts
context-predicates.cjs	CONTEXT.md predicate fact-store parser (ADR-1671, #2928) — pure parsePredicates (extracts every backtick-wrapped CLASS.subkey=value declaration, fence/HTML-comment-aware), selectPredicates (class/prefix/contains selectors, ANDed), and buildIndex (deterministic, line-free artifact shape); backs both gsd_run query context-predicates and scripts/gen-context-index.cjs's docs/CONTEXT-INDEX.json drift guard. Compiled from src/context-predicates.cts
context-utilization.cjs	Pure classifier for gsd-health --context — turns (tokensUsed, contextWindow) into a { percent, state } triage result against the 60%/70% fracture-point thresholds (#2792)
core-utils.cjs	Shared low-level utilities — POSIX path normalization, sub-repo/subdirectory scanning, phase file stats, slug/one-liner/plan-id helpers, time-ago (extracted from core.cjs, ADR-857)
core.cjs	Shared utilities and runtime fallbacks; compatibility re-exports for planning-workspace and I/O (io.cjs) helpers
coverage.cjs	Deterministic SUMMARY coverage: block parser/validator/classifier for gsd-tools uat classify-coverage; routes deliverables to auto-pass vs human-UAT with a fail-safe default (#1602)
decisions.cjs	Parses CONTEXT.md <decisions> blocks; accepts numeric (D-42) and alphanumeric (D-INFRA-01) IDs; returns {id, text, category, tags, trackable}
docs.cjs	Docs-update workflow init, Markdown scanning, monorepo detection
drift.cjs	Post-execute codebase structural drift detector (#2003): classifies file changes into new-dir/barrel/migration/route categories and round-trips last_mapped_commit frontmatter
edge-probe.cjs	Spec-completeness edge probe (compiled from src/edge-probe.cts, gitignored) — the first adapter of the probe-core resolution model (ADR-550 Decision 7): shape classification, applicable-category relevance filter, edge proposal, and the {explicit, backstop} verification validators; delegates merge/rollup/CLI to probe-core; exports classifyShape, applicableCategories, proposeEdges, analyzeCoverage, validateResolution, TAXONOMY (#550)
embedding-adapter.cjs	Defines the minimal HostIntegrationInterface contract every embedding adapter implements (#1680)
eval-command-router.cjs	Routes the eval.score verb (compiled from src/eval-command-router.cts, gitignored) — thin dispatcher into the eval scoring module (#1579)
eval.cjs	Deterministic eval scoring (compiled from src/eval.cts, gitignored) — computeEvalScore (coverage0.6 + infra0.4, bands 80/60/40) + cmdEvalScore CLI domain guard; moves the gsd-eval-auditor's weighted arithmetic out of the prompt into code (#10 / #1579)
estimate-cli.cjs	I/O seam over phase-estimation.cjs — the estimate-check and estimate-calibration query verbs; reads the workflow.smart_zone_tokens budget and .planning/estimation-calibration.json, both degrading to defaults rather than failing planning (#2630)
exit-code-registry.cjs	Generated exit-code allocator — one number, one meaning table of registered process exit codes (band rules: 2 hook-adapter only, 64-78 generic, 80-125 domain); emitted by scripts/gen-exit-code-registry.cjs --write (ADR-3889 §1/§2); exports EXIT_CODES and the pure, total exitCodeFor/nameForExitCode
observability/event.cjs	DispatchEvent shape factory for every Hub dispatch — traceId/parentTraceId/command/result/timestamp record consumed by DispatchLogger (#177, ADR-0174 P1.3/P1.4)
external-descriptor-trust.cjs	Defense-in-depth path-containment check for third-party plugin descriptors (#1681)
external-job.cjs	Produces scheduler manifests for asynchronous external jobs; SLURM is the first backend (#1164)
fallow-runner.cjs	Fallow audit adapter for /gsd-code-review: binary resolution (node_modules/.bin then PATH), actionable missing-binary errors, and structural findings normalization
federated-config.cjs	Defensive merge of capability-declared config slices into the loadConfig return value — ADR-857 phase 3b; exports mergeFederatedConfig({ configSchema, isCentralKey, userConfig }) → { values, validKeys, warnings }; live for migrated Capability keys that are atomically removed from the central config schema
frontmatter.cjs	YAML frontmatter CRUD operations
gap-checker.cjs	Post-planning gap analysis (#2493): unified REQUIREMENTS.md + CONTEXT.md decisions vs PLAN.md coverage report (gsd-tools gap-analysis)
gate-predicate-evaluator.cjs	Evaluates capability gate predicates — command-exit-zero and artifact-frontmatter (#2008)
git-base-branch.cjs	Single base-branch resolver (gsd_run query git.base-branch) with full precedence ladder: config override → origin/HEAD symref → git remote show origin → local branch presence → "main". Eliminates per-workflow duplicated bash detection (#1146)
graphify.cjs	Knowledge-graph build/query/status/diff for /gsd-graphify
graphify-command-router.cjs	ADR-959 capability command router for gsd-tools graphify — dispatches build/query/status/diff subcommands; first real capability command cutover (phase 4d-impl-2)
gsd2-import.cjs	External-plan ingest for /gsd-import --from-gsd2
handshake-serialized.cjs	Serialized handshake for out-of-process host integration; JSON wire-safe (#1683)
health-diagnostic-types.cjs	Shared, dependency-free SEVERITY/REMEDY_ACTION/REMEDY_RISK enums and Diagnostic/Remedy/Rule types for validate health — split out of health-diagnostic.cjs so its rule-group files can depend on the enums/types without a CJS circular require back into the evaluator (ADR-3180 §8.2/§8.3/§8.5, Phase 11, #3309)
health-diagnostic.cjs	Frozen rule-table contract for validate health — SEVERITY/REMEDY_ACTION/REMEDY_RISK enums, Diagnostic/Remedy/Rule shapes, the fully-wired RULES table (the static concatenation of the 31 rules exported by the eight health-diagnostic-rules/*.cjs group files), evaluateRules (throws on duplicate rule codes), and applyRepairs (the real --repair/--backfill dispatcher with real per-action handlers — refuses DESTRUCTIVE-risk remedies) (ADR-3180 §8.2/§8.3/§8.5, Phase 11, #3309)
hook-bus.cjs	Abstracts the hook-bus ownership model — engine pub-sub, host-owned, or none (#1680)
host-integration-sdk.cjs	Versioned public API surface for external host-plugin authors (#1683)
host-integration.cjs	Host-Integration Interface (ADR-1239 Phase A) — negotiated capability contract over the six host-integration points; negotiateHostCapabilities fail-closes on undeclared/unknown/undocumented values, typed degradation ladder, host-capability profiles; the 8 runtime.hostIntegration axes are validated in capability-validator.cjs and sourced per-CLI in docs/reference/host-integration-capability-matrix.md
host-runtime-detection.cjs	Host Runtime Detection Module (ADR-2313 Phase 5, #3245) — the detection rung beneath GSD_RUNTIME and .planning/config.json runtime that lets init report agent_runtime: codex inside a Codex session instead of the hardcoded claude default; detectHostRuntime returns the typed {runtime, source, signal} from citation-backed Codex signals (CODEX_SANDBOX/CODEX_SANDBOX_NETWORK_DISABLED, else CODEX_HOME + config.toml), resolveReportedRuntime composes the full ladder. Pure, injectable, never writes, never shells out
host-integration-adapters/imperative-hook-bus.cjs	Imperative hook-bus adapter — descriptor-driven hooks.json binding generalized from the Cursor-specific writer, resolving the negotiated hookBus axis against a host's documented hostBehaviors.managedHookEvents list; pure, no I/O (ADR-1239 Phase D, #2089)
init-command-router.cjs	Thin CJS subcommand router adapter for gsd-tools init
init.cjs	Compound context loading for each workflow type
install-effort-resolver.cjs	Install-time effort resolution — readGsdEffectiveEffortConfig (merges ~/.gsd/defaults.json + project .planning/config.json) + resolveInstallTimeEffort, extracted from bin/install.js (#2071) so gsd-tools effort sync can require it from the shipped runtime instead of the never-copied package-root installer; install.js imports them back (single source)
install-engine.cjs	Runtime-artifact install engine — installRuntimeArtifacts/uninstallRuntimeArtifacts/installOpencodeFamilySkills + their helpers, extracted from bin/install.js (ADR-1239 Phase B, #1679); install.js imports them back and injects getCommitAttribution
install-fs-adapter.cjs	Install Fs Adapter — narrow, enumerated fs seam for the installRuntimeArtifacts call tree (#2874, epic #2866 Phase 5, ADR-58's never-landed cleanup rollout step); a single ambient adapter (real fs in production, an injectable fake in tests) is swapped for the duration of one synchronous install via withInstallFs, extending the deps bag precedent already established by Runtime Artifact Install Plan Module rather than threading a new parameter through every call site; routes destination IO only — package-source lookups (findInstallSourceRoot, findAgentsSourceRoot, readGsdCommandNames) are deliberately unrouted, by design, not by omission
install-model-override-resolver.cjs	Install-time per-agent model-override resolution (#2256 / #2794) — model_overrides[agent] > model_profile_overrides.<runtime>.<tier> > omit, extracted from bin/install.js's inline agent-staging loop (#2875 Part 2 / J8), which duplicated this exact precedence chain across two runtime branches (OpenCode/Kilo); mirrors install-effort-resolver.cjs's existing extraction precedent so the descriptor-driven agents pipeline and bin/install.js's own callers resolve through the SAME single source of truth
install-profiles.cjs	Install profile allowlist + skill staging for --minimal install (#2762); single source of truth for which gsd-* skills/agents land in runtime config dirs
install-scope.cjs	Install Scope Module — resolveScope({id,runtime,...}) resolves the 'global'|'local' install-scope axis into {id, configHome, settingsFile, consentRequired, hostPrecedenceRank}, composing resolveConfigHomeFromDescriptor (runtime-homes.cjs) rather than modifying it (#2870, ADR-2866)
install-shadow-report.cjs	Cross-Scope Shadow Report Module (#2873, epic #2866 Phase 4a) — read-only projection over installed-surface-resolver.cjs's resolveInstalledSurfaces; buildShadowReport(runtime, opts) filters resolveTriggerSurface's shadowedBy groups down to triggers whose underlying stem genuinely exists in BOTH scopes' own manifests (not merely the union), and renderShadowReport projects the typed IR into bounded, sanitized (sanitizeForRender strips ANSI/C0-C1/bidi overrides) operator-console lines; consumed by both the installer and the W028 health rule so install-time and /gsd-health report identically
health-diagnostic-rules/install-surface-shadowing.cjs	Health-diagnostic rule: cross-scope trigger shadowing check (W028) — projects install-shadow-report.cjs's ShadowReport as a WARNING-severity, ADVISE/risk:NONE diagnostic (never auto-fixable), reusing agent-install.cjs's W010 runtime-resolution shape; degrades to [] (never throws) when nothing is installable to report (#2873, epic #2866 Phase 4a)
installed-surface-resolver.cjs	Installed Surface Resolver — resolveInstalledSurfaces(runtime?, opts?) probes both install scopes for a runtime (or every registered runtime, sorted, when omitted), reads each scope's manifest, and resolves the trigger surface across only the scopes actually installed on this machine, composing resolveScope and resolveTriggerSurface rather than re-deriving either (#2872, ADR-2866 Phase 3); local-scope manifest read is lstat-guarded and refuses to follow a symlinked config dir or manifest, degrading that scope to installed: false rather than following (#2873)
installer-migration-authoring.cjs	Installer migration authoring guardrails for record metadata, explicit scopes, ownership evidence, and runtime contract citations
installer-migration-report.cjs	Installer migration report projection and blocked-action guard for install/update integration
installer-migrations.cjs	Installer migration planning, artifact classification, install-state persistence, journaled apply, and rollback helpers
intel.cjs	Codebase intel store backing /gsd-map-codebase --query and gsd-intel-updater
intel-command-router.cjs	ADR-959 capability command router for gsd-tools intel — extracted from the case 'intel': arm in gsd-tools.cjs; dispatches query/status/diff/snapshot/patch-meta/validate/extract-exports/update/api-surface subcommands; preserves timeAgo transform on status.files[*].updated_at in non-raw mode; phase 4d-impl-4 (last first-party cutover)
io.cjs	CLI I/O primitives — output/error emission, JSON-error mode, and large-payload temp-file spillover (extracted from core.cjs, ADR-857)
learnings.cjs	Cross-phase learnings extraction for /gsd-extract-learnings
legacy-cleanup.cjs	Detect and remove leftover get-shit-done-cc artifacts; exports planLegacyCleanup (pure scan) and applyLegacyCleanup (thin IO applier) that root out stale files from the old package across every GSD-managed runtime config directory (#607)
observability/logger.cjs	DispatchLogger interface + default implementation — silent on success, structured stderr JSON on error, opt-in .gsd-trace.jsonl audit file (GSD_AUDIT=1), args omitted unless GSD_AUDIT_ARGS=1 (#177, ADR-0174 P1.3)
loop-host-contract.cjs	Generated Loop Host Contract — 12 loop points, per-step agent roles, and core artifacts for the five-step pipeline (discuss/plan/execute/verify/ship); emitted by scripts/gen-loop-host-contract.cjs --write (ADR-894 §3); consumed by gen-capability-registry.cjs
loop-resolver.cjs	Loop Extension Point resolver — ADR-857 phase 3c/6 registry-consuming query; given a canonical loop point, filters byLoopPoint by resolved Capability State plus config activation (when key traversal with prototype-pollution guard), returns { point, activeHooks, rendered } envelope; resolveLoopHooks and renderLoopHooks are pure (no I/O); command surface: gsd-tools loop render-hooks <point> [--config-dir <path>]
markdown-sectionizer.cjs	Canonical markdown-structure parsing seam (ADR-1372, epic #1372) — pure, Node built-ins only; exports stripFencedCode (CommonMark-correct fence stripper, CRLF-safe), stripInlineCode (per-line CommonMark inline-code-span stripper, #2365), tokenizeHeadings (ATX headings outside fenced blocks), collectSections/collectSection (line-by-line section collection with bodyStart/bodyEnd offsets), iterateBullets (dash/checkbox/numbered markers), extractTaggedBlocks (inner text of <tag>…</tag> blocks, caller decides fence-stripping), replaceSection (pure character-offset body splice for read-modify-write callers), and withSection (resolve a section by heading/predicate and run an edit callback against ONLY its body, splicing the result back — ADR-2143 §4 bounded mutation); foundation for T0–T7 migration tiers retiring 8+ ad-hoc parsers
markdown-table.cjs	Canonical GFM table model + TABLE_SCHEMAS registry seam (ADR-2143, epic #2143) — pure, Node built-ins only; exports parseMarkdownTable(sectionText) → Result<MarkdownTable> (parses the first GFM pipe table, typed parse errors for ragged/malformed rows rather than silent coercion), MarkdownTable ({columns, rows}, rows addressed by column name), Result<T> ({ok:true,value}|{ok:false,reason} — distinct from command-routing-hub's dispatch Result), TABLE_SCHEMAS (canonical column-header variants for RoadmapProgress/RequirementsTraceability/QuickTasks/Security tables), and matchTableSchema(columns) → {id,label}|null (resolves parsed headers back to a canonical schema); consumed by phase-lifecycle.cts's deriveProgressFromRoadmap (fixes #2137, the 5-column milestone-grouped Progress table)
mcp-catalog.cjs	Serves GSD workflows, references, and commands as MCP resources and prompts (#3072)
mcp-server.cjs	Minimal MCP server exposing the command surface and state IO to any MCP host (#1681)
health-diagnostic-rules/milestone-archive-hygiene.cjs	Health-diagnostic rules: milestone archive + root hygiene checks (W018, W019), ported behavior-preserving from cmdValidateHealth (ADR-3180 §8.2/§8.3/§8.5, Phase 11, #3309)
milestone.cjs	Milestone archival, requirements marking
model-adapter.cjs	Abstracts model routing — passive tier-based selection or active host-supplied resolution (#1680)
model-catalog.cjs	CJS adapter over the shared model catalog JSON; exports canonical runtime tier defaults, agent profile maps, alias maps, and routing metadata for all CLI consumers
model-profiles.cjs	Backward-compatible profile helpers derived from model-catalog.cjs; no longer owns its own model table
model-resolver.cjs	Model/effort resolution policy — resolves model, tier, granularity, effort, and fast-mode for an agent from config + model profiles/catalog (extracted from core.cjs, ADR-857)
onboard-projection.cjs	Projects the onboarding situation from docs, package, and codebase-map readiness (#1671)
package-identity.cjs	Generated single source for GSD's published-package coordinates (npm name, bin name, repo slug, changelog URL, manual-install command), derived from package.json; read by the update worker, check-latest-version, and installer (#498)
package-legitimacy.cjs	Registry-API package legitimacy verdicts (OK/SUS/SLOP) from npm/PyPI/crates, slopcheck optional
pattern.cjs	The pattern-construction seam — escapeRegex (delegates to the built-in RegExp.escape) and literalPattern; sole owner of building a RegExp from a runtime value (ADR-3212 §1, epic #3212 Phase 1, #3412)
phase-command-router.cjs	Thin CJS subcommand router adapter for gsd-tools phase
phase-estimation.cjs	Pure phase-effort estimation — estimate/actuals schema parse+render, smart-zone budget classification, and estimate-vs-actual calibration (median ratio, clamped, sample-gated). Confidence is derived from calibration sample count, never self-rated (ADR-2629)
phase-id.cjs	Pure phase-id parsing/matching helpers — normalize, token match, milestone/phase-dir id parsing, phase-markdown regex builders (extracted from core.cjs, ADR-857)
phase-lifecycle.cjs	Pure-computation phase lifecycle helpers extracted from the phase-lifecycle SDK handler
phase-locator.cjs	Phase-directory search/location — active + archived phase-dir discovery, phase-id matching against the filesystem (extracted from core.cjs, ADR-857)
health-diagnostic-rules/phase-structure.cjs	Health-diagnostic rules: phase directory structure checks (W005, W023, I001, W009), ported behavior-preserving from cmdValidateHealth (ADR-3180 §8.2/§8.3/§8.5, Phase 11, #3309)
phase.cjs	Phase directory operations, decimal numbering, plan indexing
phases-command-router.cjs	Thin CJS subcommand router adapter for gsd-tools phases
plan-dependency-graph.cjs	Shared halt-propagation over a plan's depends_on DAG — the single topological-order + halt-propagation engine used by both phase.cjs's wave-grouping and phase-locator.cjs's phase-location primitive, so the two can never diverge on which plans a halted plan blocks (#2830)
plan-document.cjs	Canonical parser for a *-PLAN.md document BODY (compiled from src/plan-document.cts, gitignored; #2790) — parsePlanDocument(content, planPath?) returns <objective>, the <task> block rows (with the legacy ## Task N heading fallback), per-task <files>/<acceptance_criteria>/<done>, and the frontmatter scheduling metadata (wave, depends_on, autonomous, agent_hint, files_modified); frozen TASK_KIND (AUTO/CHECKPOINT) so a checkpoint:* block is reported as its own kind rather than a malformed auto task. Extracted from cmdPhasePlanIndex's inline loop so phase.plan-index and planning.inspect cannot drift; the invariant taskCount === tasks.length === (xmlTaskCount || mdTaskCount) is preserved byte-for-behaviour
plan-drift-guard.cjs	Classifies symbol-verification severity against the ADR-22 authority ladder
plan-scan.cjs	Canonical phase-plan scanner for detecting plan and summary files in flat and nested layouts (k014)
planning-command-router.cjs	Thin CJS subcommand router for gsd-tools planning (compiled from src/planning-command-router.cts, gitignored; #2790) — one subcommand, inspect; v1 accepts no arguments, so a stray positional or unknown flag is a fail-loud ERROR_REASON.USAGE rather than a silently-ignored one
planning-inspect.cjs	Read-only schema-v1 canonical planning snapshot (compiled from src/planning-inspect.cts, gitignored; #2790) — buildPlanningInspect(cwd) / cmdPlanningInspect; PLANNING_INSPECT_SCHEMA_VERSION = 1 is the wire contract consumers must reject other values of. Composed from the ADR-3180 §7 owners plus parsePlanDocument/parseRequirements/parseUatItems, and read through the Markdown Sectionizer + Markdown Table Model seams; deliberately declares its own flat external schema rather than serializing the still-growing PlanningSnapshot. Frozen INSPECT_DIAGNOSTIC/TASK_STATUS/PROVENANCE/AGREEMENT enums carry every non-answer — unknown or conflicting evidence is reported with a coded diagnostic, never inferred
planning-scope.cjs	Frozen SCOPE discriminator (COMPLETE/TRUNCATED/UNSCOPED/UNREADABLE) distinguishing a genuinely-empty derivation from one computed over a truncated or unscoped input, so callers can branch on the difference instead of reading a plausible zero (ADR-3180)
planning-snapshot.cjs	Parsed projection of .planning/ composed exclusively from the ADR-3180 §7 owners (milestone identity, phase enumeration, phase completion, plan/summary counting, STATE.md current-phase) — exposes only scope-carrying parsed values, never raw document text, so a diagnostic rule cannot re-derive a field's location (ADR-3180 §8.1)
planning-workspace.cjs	Planning path/workstream seam (planningDir, planningPaths, active-workstream routing, .planning/.lock orchestration)
project-root.cjs	Resolves a project root from a starting directory using four heuristics (own .planning/ guard, sub_repos config, multiRepo flag, .git heuristic)
profile-output.cjs	Profile rendering, USER-PROFILE.md and dev-preferences.md generation
profile-pipeline-command-router.cjs	ADR-959 capability command router for the profile-pipeline command family — dispatches scan-sessions, extract-messages, profile-sample (pipeline phase) and write-profile, profile-questionnaire, generate-dev-preferences, generate-claude-profile, generate-claude-md (output phase); phase 6 cutover
profile-pipeline.cjs	User behavioral profiling data pipeline, session file scanning
prompt-budget.cjs	Pure token-budget accounting for review prompts — estimates tokens, applies deterministic trim priority (head-shrink PROJECT.md, proportional plan truncation, drop context/research/requirements, hard-fail guard), returns structured metadata for review.max_prompt_tokens (#3081)
observability/redaction.cjs	Arg redaction policy for dispatch events — args omitted from every emitted event by default, opt-in verbatim inclusion via GSD_AUDIT_ARGS=1; stateless env read, no module-level caching (#177)
real-home-guard.cjs	Real-home confinement guard (#3712; renamed from test-home-guard.cjs — a source filename matching Node's test-* convention is collected and executed as a test by the remote runner) — refuses any of the six writers that resolve a kind home — installRuntimeArtifacts, uninstallRuntimeArtifacts, applySurface, migrateLegacyDevPreferencesToSkill, plus the descriptor-dependent installOpencodeFamilySkills and installAgentsKindStandalone when a node --test run would resolve a kind's global home override (codex skills -> $HOME/.agents, ADR-1239/#2088) inside the real passwd home, which silently pruned every gsd-* skill there; compares homes by filesystem identity (st_dev+st_ino) rather than by pathname, since a case-variant, symlinked, or bind-mounted HOME names one directory under two names; fails CLOSED unless both homes identify or one is definitively absent (the pathname-equality shortcut in sameDirectory can answer yes without identifying, so the marker branch requires the marker to identify separately before it may allow anything); a destination inside the real home is exempted only when HOME differs from the passwd home, the passwd home is not itself beneath that HOME (/Users, C:\Users are not sandboxes), and the destination resolves beneath it (Windows puts the temp root inside the home, so containment alone cannot tell a sandbox from the danger); where no passwd entry is readable it falls back to sandboxHome()'s path-valued marker, which must identify AND contain every resolved destination — a marker matching HOME attests only that HOME was sandboxed, so on its own it waved through a layout captured before the sandbox that still named the real ~/.agents; it remains a deliberate weakening rather than a closed door, since nothing there can contradict a marker naming the real home; does not defend against a subordinate bind mount of the real directory into the sandbox (realpath cannot unify bind-mounted spellings) or a cross-process TOCTOU swap; inert for normal installs outside a Node test context
refactor-trigger-command-router.cjs	ADR-959 capability command router for gsd-tools refactor (issue #1953) — dispatches evaluate/status/accept/decline subcommands for the complexity-triggered refactor capability; owns capability-activation gating, git invocation (via the git-base-branch.cjs phaseStartCommit/changedFilesSince adapters), config reads, phase-directory resolution, and the optional broken-windows ledger integration around the pure complexity-trigger.cjs leaf
research-provider.cjs	Research provider waterfall, confidence tiers, and planResearch (cache-hits + fetch plan)
research-store.cjs	Content-addressed research cache: sha256 keys, per-source TTL staleness, two-tier (user ~/.gsd / project .planning) store
resolution.cjs	Defines the Resolution envelope carried by config-reading verbs, with provenance (#1411)
retired-artifact-cleanup.cjs	Manifest-safe cleanup for descriptor-declared retired runtime artifact surfaces; shared by install and profile/surface apply so removed layout kinds converge without deleting modified or unknown user files (#2644)
probe-core.cjs	Generic spec-phase probe resolution model (compiled from src/probe-core.cts, gitignored; ADR-550 Decision 7) — the status×verification re-cut (status: resolved/dismissed/unresolved × per-probe verification), validateResolution/validateRequirement, analyzeCoverage(items, resolutions?, validators) merge/rollup/orphan-reject, the byVerification rollup, and the runProbeCli I/O scaffold; the shared seam consumed by edge-probe (and the prohibition probe #644); exports VALID_STATUS, validateResolution, validateRequirement, analyzeCoverage, runProbeCli (#550)
prohibition-enforcement.cjs	Deterministic test-tier prohibition PRODUCER/gate (compiled from src/prohibition-enforcement.cts, gitignored; #1259, ADR-550 D5d "heavy half") — locates the wired mechanical check (node-test or lint-rule), confirms it is fail-first, runs it via an injectable runner, builds typed enforcementEvidence, and emits the dispositionForProhibition verdict; a passing wired check disposes green, a missing/failing/non-fail-first check hard-gates (flagged, non-green) in both interactive and autonomous modes; exports runProhibitionEnforcement, routeProhibitionEnforcement; CLI surface gsd_run check prohibition-enforcement <request.json>
review-lane-descriptor.cjs	Declared reviewer-lane contract (compiled from src/review-lane-descriptor.cts, gitignored; ADR-2782) — the frozen REVIEWER_LANES roster, the lane slug grammar, and two pure parity gates: checkReviewerLaneParity (descriptor ↔ roster ↔ registry, plus anti-parity against re-added bespoke workflow legs) and checkReviewerDocsParity (declared flags and section titles ↔ docs/COMMANDS.md, docs/FEATURES.md and their locale mirrors; #2800, closes #2781/#2272); exports REVIEWER_LANES, PARITY_VIOLATION, DOCS_PARITY_VIOLATION, LANE_SLUG_RE
review-lane-invocation.cjs	Pure projection from a declared reviewer lane plus resolved config to a concrete invocation plan (compiled from src/review-lane-invocation.cts, gitignored; ADR-2782 Phase 5b) — no filesystem, network or clock; config arrives through a configGet seam; exports resolveLanePlan, LANE_UNAVAILABLE
review-lane-runner.cjs	Execution of a reviewer-lane invocation plan (compiled from src/review-lane-runner.cts, gitignored; ADR-2782 Phase 5b) — probe, spawn or HTTP call, empty-output policy, egress-host check, and dispatch of the three first-party handler modules; exports runLane, probeLane, checkEgressHost, writeReviewOrStub
review-reviewer-selection.cjs	Reviewer selection/normalization helpers for /gsd-review default reviewer policy and precedence
roadmap-command-router.cjs	Thin CJS subcommand router adapter for gsd-tools roadmap
health-diagnostic-rules/roadmap-disk-consistency.cjs	Health-diagnostic rules: ROADMAP-vs-disk phase directory consistency checks (W006, W007), both resolved through the shared matchPhaseDirs matcher, ported behavior-preserving from cmdValidateHealth (ADR-3180 §8.2/§8.3/§8.5, Phase 11, #3309)
roadmap-parser.cjs	ROADMAP.md parsing — milestone slicing, current-milestone extraction, phase/milestone lookups, milestone-phase filter (extracted from core.cjs, ADR-857)
roadmap-upgrade.cjs	Migration tool for converting legacy Phase N entries to milestone-prefixed Phase M-NN convention; computeMigrationPlan + applyMigration with dry-run default and atomic rollback
roadmap.cjs	ROADMAP.md parsing, phase extraction, plan progress
health-diagnostic-rules/root-existence.cjs	Health-diagnostic rules: root .planning/ existence + PROJECT.md checks (E002-E004, W001), ported behavior-preserving from cmdValidateHealth (ADR-3180 §8.2/§8.3/§8.5, Phase 11, #3309)
runtime-artifact-conversion.cjs	Runtime artifact conversion module — projects Claude-authored commands, agents, and skills into runtime-specific artifact bodies while preserving installer compatibility exports
runtime-artifact-install-plan.cjs	Runtime artifact install plan module — stages pre-resolved layout kinds, applies runtime body rewrites, and returns copy-plan items plus cleanup obligations
runtime-artifact-layout.cjs	Runtime artifact layout module — resolves the artifact directory shapes (commands, agents, skills) for each supported runtime; single source of truth for per-runtime artifact placement (#3663)
runtime-config-adapter-registry.cjs	Explicit runtime config adapter registry — resolves per-runtime config-mutation install intent (install surface, shared-settings gate, finish-phase permission writer); see ADR-58.
runtime-hooks-surface.cjs	Runtime hooks surface module — standalone hook-surface writer functions extracted from bin/install.js (ADR-857 phase 5f-1); owns Cline/Cursor/Copilot/Codex hook artifact generation and reconciliation.
runtime-name-policy.cjs	Runtime name normalization policy — canonical token sanitization for runtime identifiers used in path construction and display
runtime-homes.cjs	Canonical runtime → global config/skills directory mapping; first-class support for all 15 runtimes including Hermes nested layout and Cline rules-based exclusion (#3126)
runtime-identity.cjs	Runtime identity surface (#3146) — exports classifyIdentityProbe (pure, total; (stdout, exitCode, spawnFailed, timedOut) → ok/identity_mismatch/no_identity_verb/unparseable/probe_failed), buildIdentityPayload, explainVerdict, and the launcher gate's vocabulary — frozen IDENTITY_STATUS (ok/unverified), statusForVerdict, and the anchored IDENTITY_RAW_PREFIX; backs the runtime-identity verb, which the launcher preamble probes once before any verb runs (#3841) and which also serves as a manual diagnostic for telling this package's gsd-tools apart from the predecessor's colliding binary. The PATH route is closed structurally by resolving gsd_run rather than gsd-tools; the path-based branches are covered by that assertion
runtime-slash.cjs	Runtime-aware slash-command formatter — single source of truth for emitting /gsd-<cmd> (skills-based runtimes) and $gsd-<cmd> (codex) in user-facing output and persisted artifacts (#3584)
schema-detect.cjs	Schema-drift detection for ORM patterns (Prisma, Drizzle, Supabase, TypeORM, Payload); exports detectSchemaFiles, detectSchemaOrm, checkSchemaDrift, SCHEMA_PATTERNS, ORM_INFO
secrets.cjs	Secret-config masking convention (****<last-4>) for integration keys; exports SECRET_CONFIG_KEYS, isSecretKey, maskSecret, maskIfSecret
section-manifest.cjs	Pure when= evaluator over InvocationFacts (ADR-1671, epic #1671 Phase 5, #2932) — selectSections partitions a document-order list of parsed gsd:section sections into included/excluded id arrays for one concrete invocation, via WHEN_PREDICATES, a total lookup (never a parser) over the frozen WHEN_VOCABULARY imported unchanged from workflow-fragments.cjs; an unrecognized when= value fails closed (REASON.UNKNOWN_WHEN), and a coordinated-change guard at module load throws if a vocabulary entry has no predicate. Compiled from src/section-manifest.cts
semver-compare.cjs	Shared semver comparison policy helpers (compareSemverCore, stable-triplet validation, normalized tuple parsing) consumed by update-check hooks, statusline dev-install detection, and changeset extract range logic (#10)
security.cjs	Path traversal prevention, prompt injection detection, safe JSON/shell helpers
shell-command-projection.cjs	Runtime-aware shell command projection for managed hook serialization: decides PowerShell call-operator usage by runtime/platform and normalizes Windows script path tokens
smart-entry.cjs	Classifies workflow state into the enumerated smart-entry situations and their next actions (ADR-1787)
spec-section.cjs	SPEC section-status helper (compiled from src/spec-section.cts, gitignored) — the single source of truth for the canonical SPEC headings (suffix-tolerant) and markdown-table row counting; specSectionStatus/countSectionDataRows decide per-section "supplied" for plan-phase's spec-less probe fallback, replacing ad-hoc awk (contract pinned by tests/spec-section.test.cjs)
stale-bake-guard.cjs	Warns when configuration changes after a static-frontmatter runtime bake (#1688)
state-command-router.cjs	Thin CJS subcommand router adapter for gsd-tools state
state-contract.cjs	Machine-readable state contract v1 published to .planning/state.json at every step boundary (compiled from src/state-contract.cts, gitignored; #3227) — buildStateContract(cwd, deps?) is pure, publishStateContract(cwd, deps?) writes and never throws. contract: "1.0.0" is the wire version consumers gate on; frozen PHASE_STATUS (complete/in_progress/pending) and PUBLISH_REASON (published/no_planning_dir/write_failed) are the closed vocabularies. Composed from locateProgressTable, getMilestoneInfo and classifyProject so it can never disagree with GSD's own progress counters or front-door routing; owners are required lazily to avoid the state → state-contract → smart-entry → state require cycle. Best-effort by contract: it cannot change the exit code, stdout, or success of the boundary command that triggered it
health-diagnostic-rules/state-consistency.cjs	Health-diagnostic rules: STATE.md consistency checks (W002, W011, W021, W026) against config/ROADMAP/disk, ported behavior-preserving from cmdValidateHealth; W024 (state_head freshness) is a documented gap, deliberately not migrated (ADR-3180 §8.2/§8.3/§8.5, Phase 11, #3309)
state-io.cjs	Abstracts state IO modes — filesystem, sandboxed storage, or session log (#1680)
state-transition.cjs	Implements the STATE.md field-classification table and the pure transitionCore mutation path (#1769)
state-md-schema.cjs	The STATE.md field schema (compiled from src/state-md-schema.cts, gitignored; ADR-3473 §8.8, #3873) — one frozen, null-prototype STATE_FIELD_SCHEMA row per STATE.md key (type, cardinality, source, preservation, guard, mergeStrategy, body source/label, accepted value shapes, emitted-vs-guarded), replacing three previously hand-maintained tables (FIELD_CLASSIFICATION / FRONTMATTER_BODY_SOURCE in state-transition.cjs, FRONTMATTER_KEY_TO_BODY_LABEL in state.cjs) that now project from it at load time with byte-identical shape/order. Leaf module: imports from neither of its two consumers, avoiding the CJS require-cycle health-diagnostic-types.cjs was split out to break
state.cjs	STATE.md parsing, updating, progression, metrics
state-document.cjs	Pure STATE.md field extraction, replacement, status normalization, and progress calculation transforms
milestone-lock.cjs	Milestone lock (compiled from src/milestone-lock.cts, gitignored) — advisory (phase, session id) claim over STATE.md's single Current Position slot: .planning/milestone.lock claim IO, liveness (TTL + heartbeat), conflict detection, and the shared stderr warning; consumed by state.begin-phase / state.advance-plan / phase.complete so parallel phases in one working tree get a visible conflict instead of silently overwriting each other (#3311)
surface.cjs	Runtime surface module — manages the runtime enable/disable surface state independently of the install-time profile marker (ADR-0011 Phase 2)
task-command-router.cjs	Thin CJS subcommand router adapter for gsd-tools task
teams-status.cjs	Detects agent-teams status from environment and runtime; pure core (#1355)
template.cjs	Template selection and filling with variable substitution
text-lines.cjs	Line-terminator handling seam — splitLines/normalizeEol/detectEol/joinLines, the sole owner of \r?\n splitting and CRLF normalization; closes #3360's split-then-match fix in frontmatter.cjs (ADR-3212 §3, epic #3212 Phase 2, #3413)
token-scanner.cjs	Tokenizer-first seam for stateful grammars — tokenizeShellLike (quote-aware shell tokenizer, the primitive hooks/lib/git-cmd.js migrated onto) and indentWidth (bullet-nesting depth, closes #3169's cross-reference-vs-declaration false positive in decisions.cts) (ADR-3212 §4, epic #3212 Phase 3, #3414)
normalize-test-command.cjs	Normalizes a resolved test command to a one-shot form so a watch-mode runner (vitest/jest) cannot hang a verification gate (#1857); shared by all three live test-command gates (regression, post-merge, audit-fix)
uat.cjs	UAT file parsing, verification debt tracking, audit-uat support
uat-predicate.cjs	UAT-passed predicate — markdown-aware evaluation of HUMAN-UAT results; returns pass only when all required checks pass; ignores false-positive contexts (frontmatter, fenced code, blockquotes, HTML comments)
ui-consideration-probe.cjs	Spec-completeness UI-consideration probe (compiled from src/ui-consideration-probe.cts, gitignored) — the third adapter of the probe-core resolution model (ADR-550 Decision 7): element-kind classification, applicable-category relevance filter, consideration proposal, proposeElements/autoResolve (propose-then-confirm + the --auto never-dismiss floor), and the {explicit, backstop} validators; delegates merge/rollup/CLI to probe-core; exports classifyElement, applicableCategories, proposeConsiderations, proposeElements, autoResolve, analyzeCoverage, UI_TAXONOMY (#1867)
ui-safety-gate.cjs	Shell-free word-boundary UI token detector (#3706, #3718); reads phase-section text from stdin, exits 0 (UI found), 1 (no UI — real input, examined), NO_INPUT (empty/whitespace-only stdin) or UNAVAILABLE (stdin read failed) — the latter two are registry codes (ADR-3889 Phase 3, #3907); also deployed to gsd-core/bin/lib/ so the GSD installer ships it to $RUNTIME_DIR (#448)
ui-frontend-evidence.cjs	Static frontend-evidence detector (compiled from src/ui-frontend-evidence.cts, gitignored) — plan-time structural corroboration for computeUiPlanGate (#3312): a package.json UI-framework dependency or a component-framework file (*.tsx/*.jsx/*.vue/*.svelte) in the tree, so a UI-token match on a hyphenated proper noun (e.g. repo dashboard-financeiro) cannot block planning in a repo with no frontend; mirrors the post-wave computeUiSafetyGate git-diff corroboration
unusable-input.cjs	Deduplicates stderr diagnostics for corrupt or unreadable configuration (#1879)
update-context.cjs	Pure install-context resolver for /gsd-update — runtime/scope/config-dir/version detection (LOCAL/GLOBAL/UNKNOWN) ported from update.md bash; backs gsd-tools update-context (#498)
user-artifact-staging.cjs	Durable, on-disk staging for USER_OWNED_ARTIFACTS across the preserve → wipe → restore window (compiled from src/user-artifact-staging.cts, gitignored; #2875, epic #2866 Phase 6, ADR-3574) — closes #1874-F19 (in-memory-only preservation lost on a crash between wipe and restore); recoverOrphanedUserArtifacts is wired at the start of bin/install.js's install() so an orphaned staged copy from a prior crashed run is recovered before the ordinary preserve step, closing the #1879-F15 inert-fix failure mode; exports stageUserArtifacts, restoreStagedUserArtifacts, discardStagedUserArtifacts, recoverOrphanedUserArtifacts
validate-command-router.cjs	Thin CJS subcommand router adapter for gsd-tools validate
validate.cjs	Pure phase variant normalization helpers (phaseVariants, buildRoadmapPhaseVariants, buildNotStartedPhaseVariants) used by verify.cjs for W006/W007 checks; no I/O, no async
verification-command-router.cjs	Thin CJS subcommand router adapter for gsd-tools verification
verification.cjs	Verification-status routing — consolidates pass/gaps_found/human_needed status from phase verifier-emitted VERIFICATION.md frontmatter (#651)
verify-command-grounding.cjs	Verify-command path-resolvability probe (#2401) — pure extractAutomatedCommands (<automated> blocks + owning task, ReDoS-safe), resolveVerifyCommandTarget (grounds a leading cd <literal> chain or npm --prefix <literal> against the project root; three-state ok/broken/unresolvable plus not_applicable/pending_creation), probePhaseVerifyCommands (per-phase report backing gsd-tools check verify-command-paths), harvestPriorVerifyCommands (nearest prior phase's commands, surfaced to the planner ungated by context_window), and the failing-direction probe (#3172) — extractFailingDirections (pairs each <fails_when> to the nearest preceding <automated> in one document-order pass, first-wins), resolveFailingDirection (closed 6-atom status ok/missing/empty/placeholder/sentinel/orphan), and probePhaseFailingDirections (per-phase report backing gsd-tools check verify-failure-directions). Never executes command text — PLAN.md is model-authored — and never prescribes a replacement path or a failure statement. Compiled from src/verify-command-grounding.cts
verify-command-router.cjs	Thin CJS subcommand router adapter for gsd-tools verify
verify.cjs	Plan structure, phase completeness, reference, commit validation
workflow-fragments.cjs	In-file <!-- gsd:section id= when= --> marker parser/composer for GSD workflow markdown (ADR-1671, #2930) — parseWorkflowSections (fence/HTML-comment-aware document partition into explicit/gap sections, fail-closed on malformed/unclosed/nested/duplicate markers or an unknown when=), toFragments (maps sections to context-composer.cjs verbatim fragments — non-lossy by construction), and renderFragments/composeWorkflow (compose-within-budget then join, run BEFORE per-runtime converters so a marker attribute never reaches a path-rewrite regex). WHEN_VOCABULARY is a frozen 4-atom applicability set (always, flag:--wave, state:gap-closure-phase, state:has-prior-phases); widening it is an ADR amendment, not an organic edit. Compiled from src/workflow-fragments.cts
workstream-inventory-builder.cjs	Pure workstream inventory projection builder
workstream-inventory.cjs	Shared workstream inventory projection: state fields, phase/plan/summary counts, roadmap phase count, and active marker — thin orchestrator that delegates pure projection to workstream-inventory-builder.cjs
workstream-name-policy.cjs	Canonical workstream name validation (isValidActiveWorkstreamName, hasInvalidPathSegment, validateWorkstreamName) and slug normalization (toWorkstreamSlug)
workstream.cjs	Workstream CRUD, migration, session-scoped active pointer
worktree-base-ref.cjs	Worktree base-ref drift detection and degrade decision (evaluateWorktreeBaseDegrade) plus no-clobber worktree.baseRef settings management for the base-check/set-baseref subcommands (#683)
health-diagnostic-rules/worktree-health.cjs	Health-diagnostic rules: worktree health checks (W020, W017, W027 — the split-off stale-worktree subject), ported behavior-preserving from cmdValidateHealth (ADR-3180 §8.2/§8.3/§8.5, Phase 11, #3309)
worktree-safety.cjs	Worktree-root resolution and non-destructive prune policy decisions; owns W017 health-check logic
vendor/js-yaml.cjs	Vendored third-party artifact, not a GSD module. Verbatim copy of js-yaml's UMD dist build (ADR-3473 §8.1, #3881) — the single YAML parser adopted to replace this repo's hand-rolled frontmatter scanner. Vendored because gsd-core/bin/** is copied into installed trees that have no node_modules, so it may contain no external requires (enforced by local/no-external-require-in-bin). Its type twin, src/vendor/js-yaml.d.cts, is hand-authored (js-yaml ships no .d.ts upstream and @types/js-yaml is not installed) and deliberately narrow — only load/dump/FAILSAFE_SCHEMA/YAMLException are declared, so anchors/aliases/custom types/loadAll are unreachable from typed code. Never hand-edit the .cjs; scripts/lint-vendored-deps.cjs byte-compares it against the pinned js-yaml devDependency in lint:ci (the hand-authored twin is excluded from that byte-compare — there is no upstream file to compare against). See gsd-core/bin/lib/vendor/README.md
vendor/re2js.cjs	Vendored third-party artifact, not a GSD module. Verbatim copy of re2js' CJS build — the RE2 linear-time regex engine used by pattern.cjs to evaluate untrusted key_links patterns without catastrophic backtracking (#3477). Vendored because gsd-core/bin/** is copied into installed trees that have no node_modules, so it may contain no external requires (enforced by local/no-external-require-in-bin). Never hand-edit; scripts/lint-vendored-deps.cjs byte-compares it against the pinned re2js devDependency in lint:ci. See gsd-core/bin/lib/vendor/README.md
write-set.cjs	Shared fail-loud Result<T> ({ok:true,value}|{ok:false,reason}) and per-surface write-set contracts (ADR-2143, epic #2143) — WriteOutcome ({surface,applied}), WriteSet (WriteOutcome[]), and writeSetComplete(ws) (true only when the set is non-empty AND every surface applied, never an OR-into-one-flag); markdown-table.cjs re-exports Result from here so existing importers are unaffected; consumed by milestone.cts's requirements mark-complete handler to report a structured per-surface (checkbox/traceability) write-set alongside its existing fields (fixes the structural half of #2140)

docs/CLI-TOOLS.md may describe a subset of these modules; when it disagrees with the filesystem, this table and the directory listing are authoritative.

---

Hooks

Full listing: hooks/.

Hook	Event	Purpose
gsd-statusline.js	statusLine	Displays model, task, directory, context usage
gsd-context-monitor.js	PostToolUse / AfterTool	Injects agent-facing context warnings at 35%/25% remaining
gsd-check-update.js	SessionStart	Background check for new GSD versions
gsd-check-update-worker.js	(worker)	Background worker helper for check-update
gsd-update-banner.js	SessionStart	Opt-in banner surfacing update availability when GSD statusline isn't used (PR #2795)
gsd-cursor-session-start.js	Cursor sessionStart	Cursor-native context injection at session start (issue #777)
gsd-cursor-post-tool.js	Cursor postToolUse	Cursor-native STATE.md update monitor after tool calls (issue #777)
gsd-cursor-pre-tool.js	Cursor preToolUse	Cursor-native write-path guard for .planning/ (ADR-1239 / #2089)
gsd-cursor-stop.js	Cursor stop	Cursor-native verify-work reminder on agent stop (ADR-1239 / #2089)
gsd-cursor-subagent-start.js	Cursor subagentStart	Cursor-native subagent context injection (ADR-1239 / #2089); hard-blocks an executor subagent whose session is not actually isolated when the project resolves to harness-worktree (#3045)
gsd-cursor-subagent-stop.js	Cursor subagentStop	Cursor-native subagent completion reminder (ADR-1239 / #2089)
gsd-windsurf-pre-write.js	Windsurf/Cascade pre_write_code	Blocking (exit-code-2) write-path guard — blocks a write resolving to a different git root than cwd, or inside .git/ internals (ADR-1239 / #2100)
gsd-windsurf-pre-command.js	Windsurf/Cascade pre_run_command	Blocking (exit-code-2) destructive-command guard — conservative deny-list (rm -rf root/home wipes, force-push to a protected branch) (ADR-1239 / #2100)
gsd-prompt-guard.js	PreToolUse	Scans .planning/ writes for prompt-injection patterns (advisory)
gsd-workflow-guard.js	PreToolUse	Detects file edits outside GSD workflow context (advisory, opt-in)
gsd-read-guard.js	PreToolUse	Advisory guard preventing Edit/Write on unread files
gsd-read-injection-scanner.js	PostToolUse	Scans tool Read results for prompt-injection patterns (v1.36+, PR #2201)
gsd-worktree-path-guard.js	PreToolUse	Hard-blocks Edit/Write/MultiEdit with absolute paths outside the worktree root (PR #579, #260)
gsd-agent-isolation-guard.js	PreToolUse	Hard-blocks an executor Agent() dispatch missing its harness isolation parameter when the project's resolved dispatch isolation is harness-worktree (#3045)
gsd-write-guard.js	PreToolUse	Hard-blocks a whole-file Write that catastrophically shrinks a curated .planning/ artifact (ROADMAP.md, milestone roadmaps, STATE.md); override via the single-use sentinel .planning/.gsd-allow-shrink (workflow steps) or GSD_ALLOW_PLANNING_SHRINK=1 (interactive) (#2255, fix 3 of #973)
gsd-config-reload.js	FileChanged	Hot-reloads GSD config context when .planning/config.json changes mid-session (#770)
gsd-ensure-canonical-path.js	SessionStart	Symlinks ~/.claude/gsd-core/{bin,contexts,references,templates,workflows} to the plugin's bundled tree so @~/.claude/gsd-core/... includes resolve in marketplace plugin installs; no-op in classic installs, self-heals after claude plugin update (#997)
gsd-session-state.sh	PostToolUse	Session-state tracking for shell-based runtimes
gsd-validate-commit.sh	PostToolUse	Commit validation for conventional-commit enforcement
gsd-phase-boundary.sh	PostToolUse	Phase-boundary detection for workflow transitions
gsd-graphify-update.sh	PostToolUse	Auto-rebuild knowledge graph after main HEAD advances (opt-in, default off — #3347)
gsd-node-runner.sh	(helper)	Portable node resolver managed JS hook commands route through under --portable-hooks: install-time node path first, then command -v node, then well-known layouts — resolves at hook-fire time so a shared config root works in every environment (#3662)

---

Maintenance

• When a new command, agent, workflow, reference, CLI module, or hook ships, update the corresponding section here before the release is cut.
• The drift-guard tests under tests/ (see "How To Use This File" above) assert that every shipped file in the six flat families — agents, commands, workflows, references, CLI modules, hooks — is enumerated in this inventory. A new file in one of those without a matching row here will fail CI. Workflow steps/ and modes/ sub-files are the deliberate exception; see "Workflow Sub-Files" above.
• When the filesystem diverges from docs/ARCHITECTURE.md counts or from curated-subset docs (e.g. docs/AGENTS.md's primary roster), this file is the source of truth.

Related

• Commands — user-facing command reference
• Architecture — how the surfaces fit together
• docs index