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Tom Boucher 13faf66132 fix(installer): preserve USER-PROFILE.md and dev-preferences.md on re-install (#1945) 
Running gsd-update (re-running the installer) silently deleted two
user-generated files:
- get-shit-done/USER-PROFILE.md (created by /gsd-profile-user)
- commands/gsd/dev-preferences.md (created by /gsd-profile-user)

Root causes:
1. copyWithPathReplacement() calls fs.rmSync(destDir, {recursive:true})
   before copying, wiping USER-PROFILE.md with no preserve allowlist.
2. The legacy commands/gsd/ cleanup at ~line 5211 rmSync'd the entire
   directory, wiping dev-preferences.md.
3. The backup path in profile-user.md pointed to the same directory
   that gets wiped, so the backup was also lost.

Fix:
- Add preserveUserArtifacts(destDir, fileNames) and restoreUserArtifacts()
  helpers that save/restore listed files around destructive wipes.
- Call them in install() before the get-shit-done/ copy (preserves
  USER-PROFILE.md) and before the legacy commands/gsd/ cleanup
  (preserves dev-preferences.md).
- Fix profile-user.md backup path from ~/.claude/get-shit-done/USER-PROFILE.backup.md
  to ~/.claude/USER-PROFILE.backup.md (outside the wiped directory).

Closes #1924

Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-07 17:28:23 -04:00
..
agent-frontmatter.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
agent-install-validation.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
agent-skills.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
analyze-dependencies.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
anti-pattern-enforcement.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
antigravity-install.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
atomic-write.test.cjs
fix(core): add atomicWriteFileSync to prevent truncated files on kill (#1943)
2026-04-07 17:27:20 -04:00
audit-fix-command.test.cjs
feat(commands): add /gsd-audit-fix for autonomous audit-to-fix pipeline (#1814)
2026-04-05 23:07:52 -04:00
augment-conversion.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
autonomous-interactive.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
autonomous-to-flag.test.cjs
feat(autonomous): add --to N flag to stop after specific phase (#1646)
2026-04-04 07:58:27 -04:00
autonomous-ui-steps.test.cjs
fix: replace /gsd: slash command format with /gsd- skill format in all user-facing content (#1579)
2026-04-04 07:24:31 -04:00
bug-1736-local-install-commands.test.cjs
fix(installer): deploy commands directory in local installs (#1843)
2026-04-05 23:11:18 -04:00
bug-1754-js-hook-guard.test.cjs
fix(hooks): handle missing reference files gracefully during fresh install (#1878)
2026-04-07 08:13:52 -04:00
bug-1817-sh-hook-guard.test.cjs
fix(installer): guard .sh hook registration with fs.existsSync before writing settings.json (#1823)
2026-04-05 17:49:20 -04:00
bug-1818-unknown-flags.test.cjs
fix(cli): reject help/version flags instead of silently ignoring them (#1822)
2026-04-05 17:32:18 -04:00
bug-1826-phases-clear-confirm.test.cjs
fix(cli): require --confirm flag before phases clear deletes directories (#1832)
2026-04-05 18:05:32 -04:00
bug-1829-inherit-model-profile.test.cjs
fix(core): treat model_profile "inherit" as pass-through instead of falling back to balanced (#1833)
2026-04-05 18:20:11 -04:00
bug-1834-sh-hooks-installed.test.cjs
fix(installer): deploy missing shell hook scripts to hooks directory (#1844)
2026-04-05 23:11:16 -04:00
bug-1906-hook-relative-paths.test.cjs
fix(install): anchor local hook paths to $CLAUDE_PROJECT_DIR (#1906) (#1917)
2026-04-07 17:26:29 -04:00
bug-1908-uninstall-manifest.test.cjs
fix(uninstall): remove gsd-file-manifest.json on uninstall (#1939)
2026-04-07 17:19:10 -04:00
bug-1924-preserve-user-artifacts.test.cjs
fix(installer): preserve USER-PROFILE.md and dev-preferences.md on re-install (#1945)
2026-04-07 17:28:23 -04:00
bug-patterns-reference.test.cjs
feat(references): add common bug patterns checklist for debugger agent (#1780)
2026-04-07 08:13:58 -04:00
bugs-1656-1657.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
chain-flag-plan-phase.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
check-update-config-dir.test.cjs
fix(gsd-check-update): prioritize .claude in detectConfigDir search order (#1863)
2026-04-06 15:14:02 -04:00
claude-md.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
claude-skills-migration.test.cjs
fix(install): apply path replacement in copyCommandsAsClaudeSkills (#1677)
2026-04-04 15:12:58 -04:00
cline-support.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
code-review.test.cjs
feat: add /gsd:code-review and /gsd:code-review-fix commands (#1630)
2026-04-05 19:43:45 -04:00
codex-config.test.cjs
fix(install): comprehensive audit cleanup of hook copy, uninstall, and manifest (#1755) (#1768)
2026-04-05 11:37:27 -04:00
commands.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
commit-docs-bypass.test.cjs
fix(workflows): respect commit_docs:false in worktree merge and quick task commits (#1802)
2026-04-05 17:02:20 -04:00
concurrency-safety.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
config-field-docs.test.cjs
fix(docs): correct mode and discuss_mode allowed values in planning-config.md (#1882)
2026-04-07 08:13:49 -04:00
config-get-default.test.cjs
feat(config): add --default flag to config-get for graceful absent-key handling (#1893) (#1920)
2026-04-07 17:25:11 -04:00
config.test.cjs
feat(config): add execution context profiles for mode-specific agent output (#1827)
2026-04-05 19:09:19 -04:00
context-enrichment.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
copilot-install.test.cjs
feat: add /gsd:code-review and /gsd:code-review-fix commands (#1630)
2026-04-05 19:43:45 -04:00
core.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
cursor-conversion.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
defaults-json-fallback.test.cjs
feat(config): apply ~/.gsd/defaults.json as fallback for pre-project commands (#1738)
2026-04-05 09:15:41 -04:00
discuss-checkpoint.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
discuss-mode.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
discuss-phase-power.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
dispatcher.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
docs-update.test.cjs
feat: add /gsd:docs-update command for verified documentation generation (#1532)
2026-04-01 08:47:31 -06:00
execute-phase-active-flags.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
execute-phase-wave.test.cjs
test: add stale /gsd: colon reference regression guard (#1753)
2026-04-05 10:23:41 -04:00
execute-phase-worktree-artifacts.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
explore-command.test.cjs
feat(commands): add /gsd-explore for Socratic ideation and idea routing (#1813)
2026-04-05 18:33:27 -04:00
few-shot-calibration.test.cjs
docs(agents): add few-shot calibration examples for plan-checker and verifier (#1792)
2026-04-05 18:33:17 -04:00
forensics.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
frontmatter-cli.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
frontmatter.test.cjs
fix: resolve REG-04 — frontmatter inline array parser now respects quoted commas (#1695)
2026-04-04 15:50:01 -04:00
gates-taxonomy.test.cjs
feat(references): add gates taxonomy with 4 canonical gate types (#1781)
2026-04-06 15:19:46 -04:00
gsd-tools-path-refs.test.cjs
fix(commands): replace undefined $GSD_TOOLS with resolved path (#1766) (#1769)
2026-04-05 11:30:38 -04:00
hardcoded-paths.test.cjs
ci: drop Windows runner, add static hardcoded-path detection (#1676)
2026-04-04 14:37:54 -04:00
health-validation.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
helpers.cjs
fix: remove marketing text from runtime prompt, fix #1656 and #1657 (#1672)
2026-04-04 14:15:30 -04:00
hook-validation.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
hooks-opt-in.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
import-command.test.cjs
feat(commands): add external plan import command /gsd-import (#1801)
2026-04-05 18:33:24 -04:00
init-manager.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
init.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
install-hooks-copy.test.cjs
fix(install): preserve non-array hook entries during uninstall (#1824)
2026-04-05 23:07:59 -04:00
intel.test.cjs
feat(intel): add queryable codebase intelligence system (#1728)
2026-04-05 18:33:15 -04:00
kilo-install.test.cjs
fix: remove marketing text from runtime prompt, fix #1656 and #1657 (#1672)
2026-04-04 14:15:30 -04:00
learnings.test.cjs
feat(tools): add global learnings store with CRUD library and CLI support (#1831)
2026-04-05 19:09:14 -04:00
mcp-tool-inheritance.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
methodology-artifact.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
milestone-regex-global.test.cjs
fix(milestone): replace test()+replace() with compare pattern to avoid global regex lastIndex bug (#1923)
2026-04-07 17:26:31 -04:00
milestone-summary.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
milestone.test.cjs
fix(milestone): preserve 999.x backlog phases during phases clear (#1858)
2026-04-06 08:54:18 -04:00
model-alias-map.test.cjs
test: add MODEL_ALIAS_MAP regression test for #1690 (#1698)
2026-04-04 15:52:13 -04:00
model-profiles.test.cjs
feat(model-profiles): add adaptive preset with role-based model assignment (#1806)
2026-04-05 17:03:17 -04:00
multi-runtime-select.test.cjs
fix: remove marketing text from runtime prompt, fix #1656 and #1657 (#1672)
2026-04-04 14:15:30 -04:00
new-milestone-clear-phases.test.cjs
fix(cli): require --confirm flag before phases clear deletes directories (#1832)
2026-04-05 18:05:32 -04:00
next-decimal-roadmap-scan.test.cjs
fix(phase): scan ROADMAP.md entries in next-decimal to prevent collisions (#1877)
2026-04-07 08:13:46 -04:00
next-safety-gates.test.cjs
feat(next): add hard stop safety gates and consecutive-call guard (#1784)
2026-04-05 17:05:06 -04:00
next-up-clear-order.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
opencode-permissions.test.cjs
merge: sync Kilo runtime branch with latest main
2026-04-03 12:47:24 +03:00
orphaned-hooks.test.cjs
fix: stale hooks scanner ignores orphaned files from removed features (#1751)
2026-04-05 09:15:19 -04:00
package-manifest.test.cjs
fix(package): include hooks/*.sh files in npm package (#1852 #1862) (#1864)
2026-04-06 15:13:23 -04:00
parallel-dependent-plans.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
path-replacement.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
pause-work-improvements.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
phase.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
pick-flag.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
planner-decomposition.test.cjs
fix(agents): modular decomposition of gsd-planner.md to solve 50K char limit (#1612)
2026-04-03 13:32:05 -04:00
playwright-ui-verify.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
product-name-purity.test.cjs
fix: remove editorial parenthetical descriptions from product names (#1778)
2026-04-05 12:41:17 -04:00
profile-output.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
profile-pipeline.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
prompt-injection-scan.test.cjs
fix(tests): allowlist execute-phase.md in prompt-injection scan (#1835)
2026-04-05 20:03:47 -04:00
quick-branching.test.cjs
test: add stale /gsd: colon reference regression guard (#1753)
2026-04-05 10:23:41 -04:00
quick-commit-boundary.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
quick-research.test.cjs
test: add stale /gsd: colon reference regression guard (#1753)
2026-04-05 10:23:41 -04:00
reachability-check.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
read-guard.test.cjs
fix(hooks): add read-before-edit guard for non-Claude runtimes (#1645)
2026-04-04 07:35:18 -04:00
reapply-patches.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
reapply-verify-hunks.test.cjs
enhance(reapply-patches): post-merge verification to catch dropped hunks (#1775)
2026-04-06 15:20:06 -04:00
roadmap-phase-fallback.test.cjs
fix(roadmap): fall back to full ROADMAP.md for backlog phases (#1640)
2026-04-04 07:14:24 -04:00
roadmap.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
runtime-converters.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
scan-command.test.cjs
feat(commands): add /gsd-scan for rapid single-focus codebase assessment (#1808)
2026-04-05 17:04:33 -04:00
schema-drift.test.cjs
feat: add schema drift detection to prevent false-positive verification
2026-04-01 16:53:20 -04:00
secure-phase.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
security-scan.test.cjs
fix: skip bash script behavioral tests on Windows
2026-03-24 13:33:58 -04:00
security.test.cjs
feat(security): improve prompt injection scanner — invisible Unicode, encoding obfuscation, structural validation, entropy analysis (#1839)
2026-04-05 20:22:52 -04:00
semver-compare.test.cjs
fix(hooks): use semver comparison for update check instead of inequality (#1617)
2026-04-04 07:10:21 -04:00
settings-jsonc.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
stale-colon-refs.test.cjs
test: add stale /gsd: colon reference regression guard (#1753)
2026-04-05 10:23:41 -04:00
state.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
subagent-timeout.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
template.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
thinking-model-guidance.test.cjs
fix(installer): guard .sh hook registration with fs.existsSync before writing settings.json (#1823)
2026-04-05 17:49:20 -04:00
thinking-partner.test.cjs
feat(workflows): add conditional thinking partner at decision points (#1816)
2026-04-05 17:04:08 -04:00
trae-install.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
uat.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
verification-overrides.test.cjs
feat(references): add verification override mechanism reference (#1747) (#1819)
2026-04-05 17:00:30 -04:00
verifier-deferred-items.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
verify-health.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
verify-test-quality.test.cjs
feat: add test quality audit step to verify-phase workflow
2026-04-02 18:55:17 -03:00
verify.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
windows-robustness.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
windsurf-conversion.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
windsurf-install.test.cjs
fix: use ~/.codeium/windsurf as Windsurf global config dir (#1856)
2026-04-06 08:40:37 -04:00
workflow-compat.test.cjs
fix(workflows): remove deprecated --no-input flag from claude CLI calls (#1759) (#1842)
2026-04-05 22:54:12 -04:00
workflow-guard-registration.test.cjs
fix: register gsd-workflow-guard.js in settings.json during install (#1772)
2026-04-05 12:30:24 -04:00
workspace.test.cjs
test: add stale /gsd: colon reference regression guard (#1753)
2026-04-05 10:23:41 -04:00
workstream.test.cjs
fix: harden workstream session routing fallback
2026-04-02 21:36:36 -05:00
worktree-cleanup.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00
worktree-merge-protection.test.cjs
fix(workflow): protect orchestrator files during worktree merge (#1756) (#1764)
2026-04-05 11:11:38 -04:00
worktree-stagger.test.cjs
refactor(tests): standardize to node:assert/strict and t.after() per CONTRIBUTING.md (#1675)
2026-04-04 14:29:03 -04:00