* feat(plan-phase): --research-phase flag absorbs deleted /gsd-research-phase + scrub stale refs (#3042, #3044) #3042 (orphaned research-phase): /gsd-research-phase had a workflow file but no slash-command stub. Rather than restore the orphan, the research- only capability is now a flag on /gsd-plan-phase: /gsd-plan-phase --research-phase <N> When set, the workflow scopes to phase N, runs the research step (Section 5 of the existing plan-phase workflow), then early-exits before the planner/plan-checker/verifier chain. Per RCA against the deleted standalone, the flag adds two modifiers to fully cover the original surface (Option B from the RCA discussion): - --view : print existing RESEARCH.md to stdout, no spawn. Cheapest mode for the correction-without-replanning loop the issue reporter explicitly called out. Errors with a clear hint if RESEARCH.md is missing. - --research : reuse the existing "force re-research" semantics. In research-only mode this skips the existing-RESEARCH.md prompt and re-spawns unconditionally. - Neither flag, RESEARCH.md exists : prompt update/view/skip. Mirrors the deleted standalone's existing-artifact menu (#3042 RCA). #3044 (stale slash-command refs): scrubbed five deleted commands from all user-facing surfaces, including English docs, 4 localized doc sets (ja-JP, ko-KR, zh-CN, pt-BR), workflows, templates, and references. /gsd-check-todos → /gsd-capture --list /gsd-new-workspace → /gsd-workspace --new /gsd-status → /gsd-progress /gsd-plan-milestone-gaps → table rows / orphan sections removed (PR #3038 only scrubbed workflows/agent; missed the docs surfaces this PR covers) /gsd-research-phase → /gsd-plan-phase --research-phase Includes a fix to docs/issue-driven-orchestration.md (PR #3036) which itself referenced /gsd-new-workspace 4 times — self-correction. Removed: - get-shit-done/workflows/research-phase.md (orphan, capability absorbed into --research-phase flag) Tests: - tests/bug-3042-3044-research-flag-and-stale-refs.test.cjs — 46 structural-IR tests across both bugs: - argument-hint advertises --research-phase + --view - workflow parses --research-phase, sets RESEARCH_ONLY, early-exits before planner - --view prints RESEARCH.md without spawning - --research forces refresh in research-only mode - existing-RESEARCH.md prompt path with update/view/skip - workflows/research-phase.md is removed - 5 deleted slash-commands absent from 17 English user-facing surfaces + 16 localized doc surfaces (4 locales × 4 docs each) - replacement command tokens present where deleted ones lived 6950/6950 full suite pass. Lints clean. Closes #3042 Closes #3044 Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com> * fix: address all 8 CR findings on PR #3045 Major (3): - get-shit-done/workflows/plan-phase.md:344 — added explicit early-exit guard at Section 5.1: "Skip if RESEARCH_ONLY=true". Without it, an LLM could fall through "use existing, skip to step 6" → planner spawn, violating the research-only contract. The guard makes the early-exit unreachable from any non-research-only branch. - get-shit-done/references/continuation-format.md (3 examples) + zh-CN/.../continuation-format.md (3 examples) — pointed to `/gsd-plan-phase --research-phase` but docs/COMMANDS.md didn't document the flag. Added a full --research-phase + --view + --research modifier section to the /gsd-plan-phase flag table in COMMANDS.md so the canonical reference matches the continuation examples. Minor (5): - docs/FEATURES.md:1632 — `/gsd-plan-phase --research-phase` → `/gsd-plan-phase --research-phase <N>` (include required arg). - get-shit-done/templates/README.md:46 — NN-VALIDATION.md producer reverted from `/gsd-plan-phase --research-phase` (Nyquist) to plain `/gsd-plan-phase` (Nyquist). VALIDATION.md is created during normal Nyquist flow, not research-only mode — the bulk replacement was wrong for that line. - get-shit-done/workflows/help.md:89 — signature line was missing `--research`; added it alongside `--research-phase` and `--view`. - tests/bug-3042-3044-...:197 — promptHasView/promptHasSkip were tautological (matched anywhere in 1700-line workflow). Tightened to a proximity check anchored on "RESEARCH.md already exists" prompt header within a 600-char window. Updated workflow to emit that literal phrase. - tests/feat-2840-...:95 — workspace assertion used `/gsd-workspace` but the documented replacement is `/gsd-workspace --new`. Tightened to require both tokens (in 3 places: requiredCommands list, regex in conceptPairs, error message). 6950/6950 full suite pass. Lint clean. Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.7 <noreply@anthropic.com>
17 KiB
<required_reading> Read all files referenced by the invoking prompt's execution_context before starting. </required_reading>
<available_agent_types>
- gsd-code-reviewer: Reviews source files for bugs and quality issues </available_agent_types>
PHASE_ARG="${1}"
INIT=$(gsd-sdk query init.phase-op "${PHASE_ARG}")
if [[ "$INIT" == @file:* ]]; then INIT=$(cat "${INIT#@file:}"); fi
Parse from init JSON: phase_found, phase_dir, phase_number, phase_name, padded_phase, commit_docs.
Input sanitization (defense-in-depth):
# Validate PADDED_PHASE contains only digits and optional dot (e.g., "02", "03.1")
if ! [[ "$PADDED_PHASE" =~ ^[0-9]+(\.[0-9]+)?$ ]]; then
echo "Error: Invalid phase number format: '${PADDED_PHASE}'. Expected digits (e.g., 02, 03.1)."
# Exit workflow
fi
Phase validation (before config gate):
If phase_found is false, report error and exit:
Error: Phase ${PHASE_ARG} not found. Run /gsd-progress to see available phases.
This runs BEFORE config gate check so user errors are surfaced immediately regardless of config state.
Parse optional flags from $ARGUMENTS:
--depth flag:
DEPTH_OVERRIDE=""
for arg in "$@"; do
if [[ "$arg" == --depth=* ]]; then
DEPTH_OVERRIDE="${arg#--depth=}"
fi
done
--files flag:
FILES_OVERRIDE=""
for arg in "$@"; do
if [[ "$arg" == --files=* ]]; then
FILES_OVERRIDE="${arg#--files=}"
fi
done
If FILES_OVERRIDE is set, split by comma into array:
if [ -n "$FILES_OVERRIDE" ]; then
IFS=',' read -ra FILES_ARRAY <<< "$FILES_OVERRIDE"
fi
CODE_REVIEW_ENABLED=$(gsd-sdk query config-get workflow.code_review 2>/dev/null || echo "true")
If CODE_REVIEW_ENABLED is "false":
Code review skipped (workflow.code_review=false in config)
Exit workflow.
Default is true — only skip on explicit false. This check runs AFTER phase validation so invalid phase errors are shown first.
Determine review depth with priority order:- DEPTH_OVERRIDE from --depth flag (highest priority)
- Config value:
gsd-sdk query config-get workflow.code_review_depth 2>/dev/null - Default: "standard"
if [ -n "$DEPTH_OVERRIDE" ]; then
REVIEW_DEPTH="$DEPTH_OVERRIDE"
else
CONFIG_DEPTH=$(gsd-sdk query config-get workflow.code_review_depth 2>/dev/null || echo "")
REVIEW_DEPTH="${CONFIG_DEPTH:-standard}"
fi
Validate depth value:
case "$REVIEW_DEPTH" in
quick|standard|deep)
# Valid
;;
*)
echo "Warning: Invalid depth '${REVIEW_DEPTH}'. Valid values: quick, standard, deep. Using 'standard'."
REVIEW_DEPTH="standard"
;;
esac
Tier 1 — --files override (highest precedence per D-08):
If FILES_OVERRIDE is set (from --files flag):
if [ -n "$FILES_OVERRIDE" ]; then
REVIEW_FILES=()
REPO_ROOT=$(git rev-parse --show-toplevel 2>/dev/null)
for file_path in "${FILES_ARRAY[@]}"; do
# Security: validate path is within repository (prevent path traversal)
ABS_PATH=$(realpath -m "${file_path}" 2>/dev/null || echo "${file_path}")
if [[ "$ABS_PATH" != "$REPO_ROOT"* ]]; then
echo "Error: File path outside repository, skipping: ${file_path}"
continue
fi
# Validate path exists (relative to repo root)
if [ -f "${REPO_ROOT}/${file_path}" ] || [ -f "${file_path}" ]; then
REVIEW_FILES+=("$file_path")
else
echo "Warning: File not found, skipping: ${file_path}"
fi
done
echo "File scope: ${#REVIEW_FILES[@]} files from --files override"
fi
Skip SUMMARY/git scoping entirely when --files is provided.
Tier 2 — SUMMARY.md extraction (primary per D-01):
If --files NOT provided:
if [ -z "$FILES_OVERRIDE" ]; then
SUMMARIES=$(ls "${PHASE_DIR}"/*-SUMMARY.md 2>/dev/null)
REVIEW_FILES=()
if [ -n "$SUMMARIES" ]; then
for summary in $SUMMARIES; do
# Extract key_files.created and key_files.modified using node for reliable YAML parsing
# This avoids fragile awk parsing that breaks on indentation differences
EXTRACTED=$(node -e "
const fs = require('fs');
const content = fs.readFileSync('$summary', 'utf-8');
const match = content.match(/^---\n([\s\S]*?)\n---/);
if (!match) { process.exit(0); }
const yaml = match[1];
const files = [];
let inSection = null;
for (const line of yaml.split('\n')) {
if (/^\s+created:/.test(line)) { inSection = 'created'; continue; }
if (/^\s+modified:/.test(line)) { inSection = 'modified'; continue; }
if (/^\s*\w+:/.test(line) && !/^\s*-/.test(line)) { inSection = null; continue; }
if (inSection && /^\s+-\s+(.+)/.test(line)) {
files.push(line.match(/^\s+-\s+(.+)/)[1].trim());
}
}
if (files.length) console.log(files.join('\n'));
" 2>/dev/null)
# Add extracted files to REVIEW_FILES array
if [ -n "$EXTRACTED" ]; then
while IFS= read -r file; do
if [ -n "$file" ]; then
REVIEW_FILES+=("$file")
fi
done <<< "$EXTRACTED"
fi
done
if [ ${#REVIEW_FILES[@]} -eq 0 ]; then
echo "Warning: SUMMARY artifacts found but contained no file paths. Falling back to git diff."
fi
fi
fi
Tier 3 — Git diff fallback (per D-02):
If no SUMMARY.md files found OR no files extracted from them:
if [ ${#REVIEW_FILES[@]} -eq 0 ]; then
# Compute diff base from phase commits — fail closed if no reliable base found
PHASE_COMMITS=$(git log --oneline --all --grep="${PADDED_PHASE}" --format="%H" 2>/dev/null)
if [ -n "$PHASE_COMMITS" ]; then
DIFF_BASE=$(echo "$PHASE_COMMITS" | tail -1)^
# Verify the parent commit exists (first commit in repo has no parent)
if ! git rev-parse "${DIFF_BASE}" >/dev/null 2>&1; then
DIFF_BASE=$(echo "$PHASE_COMMITS" | tail -1)
fi
# Run git diff with specific exclusions (per D-03)
DIFF_FILES=$(git diff --name-only "${DIFF_BASE}..HEAD" -- . \
':!.planning/' ':!ROADMAP.md' ':!STATE.md' \
':!*-SUMMARY.md' ':!*-VERIFICATION.md' ':!*-PLAN.md' \
':!package-lock.json' ':!yarn.lock' ':!Gemfile.lock' ':!poetry.lock' 2>/dev/null)
while IFS= read -r file; do
[ -n "$file" ] && REVIEW_FILES+=("$file")
done <<< "$DIFF_FILES"
echo "File scope: ${#REVIEW_FILES[@]} files from git diff (base: ${DIFF_BASE})"
else
# Fail closed — no reliable diff base found. Do not use arbitrary HEAD~N.
echo "Warning: No phase commits found for '${PADDED_PHASE}'. Cannot determine reliable diff scope."
echo "Use --files flag to specify files explicitly: /gsd-code-review ${PHASE_ARG} --files=file1,file2,..."
fi
fi
Post-processing (all tiers):
- Apply exclusions (per D-03): Remove paths matching planning artifacts
FILTERED_FILES=()
for file in "${REVIEW_FILES[@]}"; do
# Skip planning directory and specific artifacts
if [[ "$file" == .planning/* ]] || \
[[ "$file" == ROADMAP.md ]] || \
[[ "$file" == STATE.md ]] || \
[[ "$file" == *-SUMMARY.md ]] || \
[[ "$file" == *-VERIFICATION.md ]] || \
[[ "$file" == *-PLAN.md ]]; then
continue
fi
FILTERED_FILES+=("$file")
done
REVIEW_FILES=("${FILTERED_FILES[@]}")
- Filter deleted files: Remove paths that don't exist on disk
EXISTING_FILES=()
DELETED_COUNT=0
for file in "${REVIEW_FILES[@]}"; do
if [ -f "$file" ]; then
EXISTING_FILES+=("$file")
else
DELETED_COUNT=$((DELETED_COUNT + 1))
fi
done
REVIEW_FILES=("${EXISTING_FILES[@]}")
if [ $DELETED_COUNT -gt 0 ]; then
echo "Filtered $DELETED_COUNT deleted files from review scope"
fi
- Deduplicate: Remove duplicate paths (portable — bash 3.2+ compatible, handles spaces in paths)
DEDUPED=()
while IFS= read -r line; do
[ -n "$line" ] && DEDUPED+=("$line")
done < <(printf '%s\n' "${REVIEW_FILES[@]}" | sort -u)
REVIEW_FILES=("${DEDUPED[@]}")
- Sort: Alphabetical sort for reproducible agent input (already sorted by sort -u above)
Log final scope and warn if large:
if [ -n "$FILES_OVERRIDE" ]; then
TIER="--files override"
elif [ -n "$SUMMARIES" ] && [ ${#REVIEW_FILES[@]} -gt 0 ]; then
TIER="SUMMARY.md"
else
TIER="git diff"
fi
echo "File scope: ${#REVIEW_FILES[@]} files from ${TIER}"
# Warn if file count is very large — may exceed agent context or produce superficial review
if [ ${#REVIEW_FILES[@]} -gt 50 ]; then
echo "Warning: ${#REVIEW_FILES[@]} files is a large review scope."
echo "Consider using --files to narrow scope, or --depth=quick for a faster pass."
if [ "$REVIEW_DEPTH" = "deep" ]; then
echo "Switching from deep to standard depth for large file count."
REVIEW_DEPTH="standard"
fi
fi
Compute DIFF_BASE for agent context (in case agent needs it):
PHASE_COMMITS=$(git log --oneline --all --grep="${PADDED_PHASE}" --format="%H" 2>/dev/null)
if [ -n "$PHASE_COMMITS" ]; then
DIFF_BASE=$(echo "$PHASE_COMMITS" | tail -1)^
else
DIFF_BASE=""
fi
Build files_to_read block for agent:
FILES_TO_READ=""
for file in "${REVIEW_FILES[@]}"; do
FILES_TO_READ+="- ${file}\n"
done
Build config block for agent:
CONFIG_FILES=""
for file in "${REVIEW_FILES[@]}"; do
CONFIG_FILES+=" - ${file}\n"
done
Spawn the gsd-code-reviewer agent:
Task(subagent_type="gsd-code-reviewer", prompt="
<files_to_read>
${FILES_TO_READ}
</files_to_read>
<config>
depth: ${REVIEW_DEPTH}
phase_dir: ${PHASE_DIR}
review_path: ${REVIEW_PATH}
${DIFF_BASE:+diff_base: ${DIFF_BASE}}
files:
${CONFIG_FILES}
</config>
Review the listed source files at ${REVIEW_DEPTH} depth. Write findings to ${REVIEW_PATH}.
Do NOT commit the output — the orchestrator handles that.
")
ORCHESTRATOR RULE — CODEX RUNTIME: After calling Task() above, stop working on this task immediately. Do not read more files, edit code, or run tests related to this task while the subagent is active. Wait for the subagent to return its result. This prevents duplicate work, conflicting edits, and wasted context. Only resume when the subagent result is available.
Agent failure handling:
If the Task() call fails (agent error, timeout, or exception):
Error: Code review agent failed: ${error_message}
No REVIEW.md created. You can retry with /gsd-code-review ${PHASE_ARG} or check agent logs.
Do NOT proceed to commit_review step. Do NOT create a partial or empty REVIEW.md. Exit workflow.
After agent completes successfully, verify REVIEW.md was created and has valid structure:if [ -f "${REVIEW_PATH}" ]; then
# Validate REVIEW.md has valid YAML frontmatter with status field
HAS_STATUS=$(REVIEW_PATH="${REVIEW_PATH}" node -e "
const fs = require('fs');
const content = fs.readFileSync(process.env.REVIEW_PATH, 'utf-8');
const match = content.match(/^---\n([\s\S]*?)\n---/);
if (match && /status:/.test(match[1])) { console.log('valid'); } else { console.log('invalid'); }
" 2>/dev/null)
if [ "$HAS_STATUS" = "valid" ]; then
echo "REVIEW.md created at ${REVIEW_PATH}"
if [ "$COMMIT_DOCS" = "true" ]; then
gsd-sdk query commit \
"docs(${PADDED_PHASE}): add code review report" \
--files "${REVIEW_PATH}"
fi
else
echo "Warning: REVIEW.md exists but has invalid or missing frontmatter (no status field)."
echo "Agent may have produced malformed output. Not committing. Review manually: ${REVIEW_PATH}"
fi
else
echo "Warning: Agent completed but REVIEW.md not found at ${REVIEW_PATH}. This may indicate an agent issue."
echo "No REVIEW.md to commit. Please retry with /gsd-code-review ${PHASE_ARG}"
fi
Extract frontmatter between --- delimiters first to avoid matching values in the review body:
# Extract only the YAML frontmatter block (between first two --- lines)
FRONTMATTER=$(REVIEW_PATH="${REVIEW_PATH}" node -e "
const fs = require('fs');
const content = fs.readFileSync(process.env.REVIEW_PATH, 'utf-8');
const match = content.match(/^---\n([\s\S]*?)\n---/);
if (match) process.stdout.write(match[1]);
" 2>/dev/null)
# Parse fields from frontmatter only (not full file)
STATUS=$(echo "$FRONTMATTER" | grep "^status:" | cut -d: -f2 | xargs)
FILES_REVIEWED=$(echo "$FRONTMATTER" | grep "^files_reviewed:" | cut -d: -f2 | xargs)
CRITICAL=$(echo "$FRONTMATTER" | grep "critical:" | head -1 | cut -d: -f2 | xargs)
WARNING=$(echo "$FRONTMATTER" | grep "warning:" | head -1 | cut -d: -f2 | xargs)
INFO=$(echo "$FRONTMATTER" | grep "info:" | head -1 | cut -d: -f2 | xargs)
TOTAL=$(echo "$FRONTMATTER" | grep "total:" | head -1 | cut -d: -f2 | xargs)
Display inline summary to user:
═══════════════════════════════════════════════════════════════
Code Review Complete: Phase ${PHASE_NUMBER} (${PHASE_NAME})
───────────────────────────────────────────────────────────────
Depth: ${REVIEW_DEPTH}
Files Reviewed: ${FILES_REVIEWED}
Findings:
Critical: ${CRITICAL}
Warning: ${WARNING}
Info: ${INFO}
──────────
Total: ${TOTAL}
───────────────────────────────────────────────────────────────
If status is "clean":
✓ No issues found. All ${FILES_REVIEWED} files pass review at ${REVIEW_DEPTH} depth.
Full report: ${REVIEW_PATH}
If total findings > 0:
⚠ Issues found. Review the report for details.
Full report: ${REVIEW_PATH}
Next steps:
/gsd-code-review ${PHASE_NUMBER} --fix — Auto-fix issues
cat ${REVIEW_PATH} — View full report
If critical > 0 or warning > 0, list top 3 issues inline:
echo "Top issues:"
grep -A 3 "^### CR-\|^### WR-" "${REVIEW_PATH}" | head -n 12
Note on tests: Automated tests for this command and workflow are planned for Phase 4 (Pipeline Integration & Testing, requirement INFR-03). Phase 2 focuses on correct implementation; Phase 4 adds regression coverage across platforms.
═══════════════════════════════════════════════════════════════
<platform_notes> Windows: This workflow uses bash features (arrays, process substitution). On Windows, it requires Git Bash or WSL. Native PowerShell is not supported. The CI matrix (Ubuntu/macOS/Windows) runs under Git Bash on Windows runners, which provides bash compatibility.
macOS: macOS ships with bash 3.2 (GPL licensing). This workflow does NOT use mapfile (bash 4+
only) — all array construction uses portable while IFS= read -r loops compatible with bash 3.2.
The --files path validation uses realpath -m which requires GNU coreutils (install via
brew install coreutils). Without coreutils, the path guard falls back to fail-closed behavior
(rejects paths it cannot verify), so security is maintained but valid relative paths may be rejected.
If --files validation fails unexpectedly on macOS, install coreutils or use absolute paths.
</platform_notes>
<success_criteria>
- Phase validated before config gate check
- Config gate checked (workflow.code_review)
- Depth resolved with validation (quick|standard|deep)
- File scope computed with 3 tiers: --files > SUMMARY.md > git diff
- Malformed/missing SUMMARY.md handled gracefully with fallback
- Deleted files filtered from scope
- Files deduplicated and sorted
- Empty scope results in skip (no agent spawn)
- Agent spawned with explicit file list, depth, review_path, diff_base
- Agent failure handled without partial commits
- REVIEW.md committed if created
- Results presented inline with next step suggestion </success_criteria>