Adds a Runtime State Inventory step that fires when a phase involves
renaming, rebranding, refactoring, or migrating strings across a codebase.
The core problem: grep audits find files. They do NOT find runtime state —
ChromaDB collection names, Mem0 user_ids, n8n workflows in SQLite, Windows
Task Scheduler descriptions, pm2 process names, SOPS key names, pip
egg-info directories, etc. These survive a complete file-level rename and
will break the system silently after the code is "done".
Three additions:
1. Pre-Submission Checklist — adds a reminder item so the checklist gate
catches skipped inventories before RESEARCH.md is committed
2. output_format — adds Runtime State Inventory table to the RESEARCH.md
template so the section appears in every rename/refactor phase's output
3. execution_flow Step 2.5 — structured investigation protocol with the
five categories (stored data, live service config, OS-registered state,
secrets/env vars, build artifacts), explicit examples for each, and the
canonical question that frames the whole exercise
3e61c7da94