Files
msd-core/docs/INVENTORY.md
Tom Boucher 9e6c404151 chore: merge release v1.4.0 to main (#884)
* fix(#663): resolve open CodeQL/Dependabot security alerts (ReDoS, prototype pollution, workflow perms, qs DoS) (#665)

* fix(#663): resolve open CodeQL/Dependabot security alerts

- ReDoS: collapse ambiguous nested quantifiers in phase-heading regexes
  (verify/validate/commands) and the plan-filename lookahead (phase) to
  provably-equivalent non-backtracking forms
- prototype pollution: guard __proto__/constructor/prototype in setConfigValue
- remove dead no-op .replace(/-/g,'-') in phase.cts
- escape all regex metachars in bug-2839 test
- add contents:read permissions to security-scan + install-smoke workflows
- pin qs >= 6.15.2 via overrides (DoS GHSA)
- broaden prompt-injection allowlist to translated security-model docs

Closes #663

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* test(#663): regression tests for prototype-pollution guard and roadmap-phase ReDoS

Behavioral test that config-set rejects __proto__/constructor/prototype keys
without polluting Object.prototype, plus a ReDoS guard (timing-bound) and
behavior-preservation assertions for the collapsed phase-heading regexes.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* test(#663): make ReDoS regression assert structured result, not elapsed time

Replace elapsed-time assertions (which tripped local/no-elapsed-assertion
ESLint rule and were unsound for synchronous ReDoS) with structured-result
assertions on adversarial inputs: assert that malformed phase headings/
unchecked-item lines without a terminating colon/space yield an empty Set,
which is both the correct behavior and an exercise of the fixed linear regex
on the catastrophic-backtracking input shape.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#663): add Security changeset fragment for #665

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* test(#663): fold prototype-pollution regression into config.test.cjs

The standalone bug-663-config-prototype-pollution.test.cjs was a 9th
config-module test file, tripping lint-test-file-count (the allowlist is
ratcheted and must not grow). Consolidated into config.test.cjs instead.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#660): bump next to 1.3.1-dev.0 (-dev stream per ADR 660) (#672)

After the 1.3.0 release, next moves onto the -dev prerelease stream so the
trunk self-identifies as unreleased (floor = next patch). First manual
exercise of the ADR-660 release model.

Refs #660

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* ci(#660): use scoped GSD_BOT_PR_TOKEN for backmerge & release merge-back PR creation (#673)

The open-gsd org blocks the Actions GITHUB_TOKEN from creating PRs, so
auto-backmerge and the release finalize merge-back PR steps can't open
their PRs (must be done manually). Point those two steps at a scoped
secret (pull-requests:write + contents:write), falling back to
GITHUB_TOKEN so behavior is unchanged until the secret is added.

Refs #660

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* fix: accept published installer migration checksums

* fix(#670): self-healing recovery for installer-migration checksum drift (#675)

Editing the body of an already-released installer migration drifts its computed
checksum (it hashes plan.toString()). The integrity guard then hard-aborted
every prior install on upgrade with "applied migration checksum changed" — a
100% reproducible blocker (v1.3.0, all platforms).

Already-applied migrations are filtered out of `pending` and never re-run, so
a drifted checksum is functionally inert. ADR-0008 anticipates checksum-mismatch
state as something the install-state layer must handle gracefully (plan -> apply
-> recover/report), not abort on.

This supersedes the published-checksum allowlist merged in #674 (per-release
maintenance debt — every historical checksum hand-pinned, still throws for any
unregistered value) with a general, self-healing recovery:

- Replace the throwing guard with non-fatal `collectAppliedChecksumDrift`,
  surfaced on `plan.checksumDrift`.
- Reconcile drifted stored checksums durably on the next state write
  (`reconcileDriftedChecksums`), idempotently (no perpetual writes).
- Relocate the "shipped migration bodies are immutable" rule to a CI baseline
  test that locks every shipped migration's checksum and fails on body drift —
  where #615 should have been caught, instead of blocking users.

Removes #674's legacyChecksums field, per-migration checksum pins,
published-checksums.json fixture, and compat test.

Fixes #670

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#676): consolidate hotfix into release.yml (delete standalone hotfix workflow) (#678)

* fix(#676): consolidate hotfix into release.yml; delete standalone hotfix workflow

npm allows only one trusted publisher per package and it is release.yml, so the
standalone hotfix.yml (token-auth) could never publish via OIDC (ENEEDAUTH on the
v1.3.1 finalize). Fold the patch/hotfix path into release.yml — the sole OIDC
trusted publisher — and delete hotfix.yml.

- validate-version accepts X.Y.Z (Z>0) → hotfix/X.Y.Z + base_tag; rejects rc for
  hotfixes; X.Y.0 still → release/X.Y.0.
- create branches hotfix/X.Y.Z from the base tag with optional auto-cherry-pick
  (default on) of fix:/chore: from next; release path unchanged.
- finalize is branch-agnostic already and publishes @latest via the existing
  OIDC trusted publisher (no NODE_AUTH_TOKEN).
- CONTRIBUTING branching table updated; hotfix.yml removed.

Fixes #676
Supersedes #677.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#676): add hotfix/patch path to release.yml (OIDC trusted publisher)

The companion to the hotfix.yml deletion: release.yml now handles patch
versions (X.Y.Z) via hotfix/X.Y.Z branches and publishes @latest through the
existing OIDC trusted publisher. CONTRIBUTING branching table updated.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#676): update tests/docs referencing deleted hotfix.yml (#680)

hotfix.yml was deleted (folded into release.yml). Remove the now-broken
release-coverage-scope and policy-release-no-npm-self-upgrade assertions that
readFileSync'd hotfix.yml (release.yml equivalents retained), drop the dead
install-smoke.yml path trigger, and update VERSIONING.md / docs/branching.md
prose to describe hotfixes via the Release workflow with a patch version.

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* fix: bump hono to 4.12.23 on next to clear moderate advisory

Same moderate hono advisory (GHSA-3hrh-pfw6-9m5x et al.) that blocked the 1.3.1
hotfix is present on next (was 4.12.19); bump to keep the npm-audit gate green.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#690): promote CHANGELOG 1.3.x + gate release-notes promotion (#694)

* fix(#690): promote CHANGELOG 1.3.x + gate release-notes promotion

/gsd:update showed an empty "What's New" preview after updating to 1.3.1
because CHANGELOG.md's 1.3.x content was never promoted out of [Unreleased]
into dated sections, so `scripts/changeset/cli.cjs extract` returned exit 2
("no releases in range").

- CHANGELOG.md: split [Unreleased] into dated [1.3.0] and [1.3.1] sections
  (1.3.1 = hono advisory bump + installer-migration checksum self-heal, #670;
  1.3.0 = the feature release), restoring an empty [Unreleased].
- scripts/changeset/cli.cjs: new `verify` subcommand that exits non-zero when
  CHANGELOG has no dated `## [x.y.z]` heading for a version; hoist shared
  stripV/resolveChangelogPath helpers used by extract + verify.
- .github/workflows/release.yml: gate the finalize job on `verify` (after the
  build, before tag/publish) so an unpromoted CHANGELOG can never ship again.
- gsd-core/workflows/update.md: move `rm -f $CHANGELOG_TMP` after the
  human-readable extract re-run so the preview no longer degrades to
  "(changelog unavailable)".
- tests: regression guard for the 1.3.x headings + extract range + verify
  command coverage (present/absent/undated/v-prefixed/--json/prerelease).

Closes #690

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#690): add changeset fragment for #694

Fixed-type fragment for the user-facing /gsd:update preview fix and the
release-notes promotion gate.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#698): make auto-backmerge main→next actually land (admin-merge via PAT) (#699)

The Auto Back-Merge workflow could open a back-merge PR but never landed it,
and silently reported success on failure. Fixes:

- Merge via admin bypass using GSD_BOT_PR_TOKEN (the PAT) instead of auto-merge,
  since back-merge PRs structurally can't satisfy next's required checks
  (Issue-link / PR-template / changeset-lint).
- Stop swallowing create/merge failures with "|| echo ::warning" — real
  failures now fail the job. (That greenwashing hid the whole bug.)
- Resolve the PR number with `--jq '.[0].number // empty'` (a no-match returns
  the string "null", not empty) and capture a freshly-created PR's number from
  the create URL to avoid GitHub API eventual-consistency races.
- Merge the exact PR number (env-bound) rather than by branch name.
- Force-push the disposable SHA-named bot branch, guarded by a
  chore/backmerge-main-to-next-* name check so a mislabeled PR can't redirect
  the force-push.
- Apply labels non-fatally so a missing label can't abort PR creation.
- On a genuine merge conflict, fail loudly (::error + exit 1) instead of
  pushing an empty branch and opening a PR with no diff.

Closes #698

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#637): route 3 more workflows through gsd_run launcher (hardcoded $HOME sweep) (#642)

* fix(#637): route 3 more workflows through gsd_run launcher (hardcoded $HOME sweep)

The hardcoded `node "$HOME/.claude/gsd-core/bin/gsd-tools.cjs"` invocation form
fixed in plan-phase.md (#621) survived in three more workflows. Same bug class:
on a global/shim-only install with no project-local runtime, the hardcoded path
can miss a working install, so the step reports the tool "not found" instead of
resolving it via the launcher. #3668 introduced gsd_run resolution; these sites
were missed.

- plan-review-convergence.md: convert the 3 hardcoded invocations (init,
  roadmap get-phase, state planned-phase) to gsd_run. File already carried the
  canonical preamble (first gsd_run is the earlier convergence-enabled check).
- ingest-docs.md, spec-phase.md: convert their hardcoded invocations to gsd_run
  and inject the canonical launcher preamble via
  `node scripts/sync-runtime-launcher.cjs` (these files previously had no
  gsd_run and no preamble). The injected preamble is byte-equal to
  _runtime-launcher.snippet.sh and precedes the first gsd_run call, per
  runtime-launcher-parity invariant (B).
- Add tests/bug-637-workflow-no-hardcoded-home-tool.test.cjs: repo-wide
  regression guard asserting NO workflow .md invokes gsd-tools via a hardcoded
  $HOME path. Generalizes the plan-phase-only guard from #621 — the parity test
  guards retired $GSD_SDK / bare /gsd-tools tokens but not this form, which is
  how it survived across four files. Fails on the pre-fix files, passes after.

runtime-launcher-parity 7/7; full unit suite green (3477 pass / 0 fail).

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* chore(#637): add changeset fragment for PR #642

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* test(#637): update stale bug-2801 assertion to expect gsd_run

bug-2801 pinned ingest-docs.md to the hardcoded node "$HOME/.../gsd-tools.cjs" init form, which #637 replaces with the gsd_run launcher. Flip the assertion to expect gsd_run init ingest-docs; the bare-gsd-tools rejection and CLI-handler tests are unchanged, and bug-637's repo-wide guard now owns the no-hardcoded-$HOME invariant.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Co-authored-by: Tom Boucher <trekkie@nomorestars.com>

* fix(#705): route hardcoded $HOME gsd-tools invocations in agents/commands through gsd_run (#707)

* fix(#705): route hardcoded $HOME gsd-tools invocations in agents/commands through gsd_run

The hardcoded `node "$HOME/.claude/gsd-core/bin/gsd-tools.cjs" <cmd>` form
(fixed for workflows in #621/#637) survived in agent/command surfaces and
misresolves on global/shim-only installs. Route every agent-executed
invocation through the resolved `gsd_run` launcher in gsd-phase-researcher,
gsd-planner (load_graph_context extracted to a shared reference to stay under
the planner size budget), import, and graphify. Add a regression guard over
agents/ + commands/ + gsd-core/references/ bash blocks. User-facing display
messages and docs are intentionally left untouched.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#705): use repo changeset fragment format (type: Fixed, pr: 707)

The hand-written fragment used the standard changesets package format
(package: bump) which lacks the type:/pr: frontmatter the repo's
docs-required lint consumes (fail_malformed_fragment / missing_type).
Regenerated via scripts/changeset/new.cjs.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#685): set windowsHide on all Windows child-process spawns (#688)

* fix(#685): set windowsHide on all Windows child-process spawns

A visible "gsd-core" console window flashed on Windows whenever a gsd-core
child process spawned without `windowsHide: true`. The most visible offenders
fire on every SessionStart / `/clear` (execNpm's `shell:true` npm view via the
update-check worker) and on every Edit/Write/MultiEdit in a worktree (the
worktree-path guard's git probe).

Add `windowsHide: true` to every external-binary spawn in the runtime source:
- hooks/gsd-context-monitor.js (record-session spawn)
- hooks/gsd-worktree-path-guard.js (SPAWNOPT)
- hooks/gsd-workflow-guard.js (git branch --show-current)
- src/shell-command-projection.cts (execGit / execNpm / execTool)
- src/check-command-router.cts (git log execFileSync)
- src/roadmap-upgrade.cts (git status/rev-parse/reset/clean execSync)

gsd-check-update.js already had it (the precedent). probeTty's tty call is
POSIX-only and intentionally untouched. Adds a regression test that asserts
each site plus a repo-wide completeness guard so a future external-binary
spawn that omits windowsHide fails CI. No behavior change off-Windows.

Closes #685

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#685): set changeset pr number to 688

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#687): bound agy print mode with its native --print-timeout (#689)

`/gsd-review --agy` hung indefinitely on large prompts. agy's print mode runs the
full tool-enabled agent, and on a big, file-path-rich prompt its agentic Cascade
loops on the code_search/grep tool and never converges; the transcript fallback
only runs after agy exits, so it can't recover a run that never exits.

The agy CLI exposes no per-tool deny (that lives in the Antigravity SDK), but it
does expose --print-timeout — agy's native print-mode cap. Pass it explicitly so a
stalled run self-terminates through the tool's own mechanism; a non-zero exit
discards any partial output so the existing transcript fallback / "review failed"
stub take over. Adds a regression test.

Closes #687

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#669): /gsd-review --cursor actually invokes cursor-agent (#686)

* fix(#669): /gsd-review --cursor actually invokes cursor-agent

The Cursor reviewer branch in review.md never ran the agent:
- detection probed `cursor` (the IDE launcher) instead of the headless
  `cursor-agent` binary
- the invocation used the two-token `cursor agent` (the IDE treats `agent`
  as a file-path argument, so the agent never starts)
- the prompt was piped via stdin, but `cursor-agent -p` reads the prompt
  from a command-line argument, and `2>/dev/null` hid the empty result

Probe `cursor-agent`; invoke `cursor-agent -p --mode ask --trust
--output-format text` with the prompt passed as a file-path-reference
argument (avoids the OS arg-length limit on large prompts); capture stderr
so failures are diagnosable. Invert tests/cursor-reviewer.test.cjs to assert
the corrected contract, with negative guards against the two-token form and
the stdin pipe. The sibling `agy` reviewer already used the argument form.

Closes #669

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#669): set changeset pr number to 686

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* chore: archive 463 shipped changeset fragments before wiring render (#714)

CHANGELOG promotion was a manual operator step that was never run, so 463
fragments for work already shipped in <=1.3.1 accumulated in .changeset/.
Their notes were already hand-curated into the dated [1.2.0]/[1.3.0]/[1.3.1]
CHANGELOG sections (#690 backfill, PR #694). Rendering them now would
duplicate and mis-attribute shipped work.

Move them to .changeset/archived/ (read non-recursively by all changeset
tooling, so never rendered), keeping only the 3 genuinely-unreleased
fragments at the top level. Prep for wiring `render` into the release
finalize job (#690 follow-up).

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* chore(release): wire CHANGELOG render into release finalize job (#690 follow-up) (#715)

* feat(#690): wire CHANGELOG render into release finalize job

CHANGELOG promotion has always been a manual operator step, which is why
1.3.0/1.3.1 shipped unpromoted (#690). PR #694 added a `verify` latch that
fails a release lacking a dated heading, but nothing performed the promotion.

Wire `changeset render` into the finalize job, after build/test and before
the verify gate, committing the promoted CHANGELOG so it ships with the
release. Add a `--allow-empty` flag to cmdRender so a zero-fragment release
still emits a dated heading (with a '_No notable changes._' placeholder)
instead of writing nothing and tripping the verify gate.

Note: requires the changeset-archive cleanup (separate PR) to land first, so
the first render consumes only genuinely-unreleased fragments.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#713): set changeset pr number to 715

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* docs: document --only and --text flags for /gsd-autonomous (#695) (#716)

Adds --only N and --text to the COMMANDS.md reference table and the
run-phases-autonomously how-to guide, revised to fit the Diataxis
framework (reference: factual/parallel rows; how-to: goal-framed sections).

* feat(#656): Research module — content-addressed cache + provider seam + registry-API legitimacy (#664)

* feat(#656): add Research Store module (content-addressed cache, TTL staleness)

Content-addressed research cache behind a clock seam: researchKey (sha256, deterministic), putResearch/getResearch ({hit,stale}, never throws), ttlForSource (curated HIGH 30d / MED 7d / web LOW 1d), two-tier resolveStorePath (curated -> ~/.gsd/research-cache, web/synthesis -> project .planning/research/.cache). 28 behavioral + property tests; boundary coverage at ttl-1/ttl/ttl+1.

Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* feat(#656): add Research Provider module (waterfall + confidence + plan)

Single source of truth for the Balanced provider waterfall (docs Context7->Ref->Jina, web Exa+Tavily, fallback Perplexity/Brave, Firecrawl scrape-only). classifyConfidence stamps HIGH|MEDIUM|LOW by provider (never throws). providerAvailability maps config flags to usable providers. planResearch checks the Research Store (injected seam) and returns cache-hits + a per-question fetch plan, falling through the waterfall to the always-available websearch terminal. 22 behavioral + property tests.

Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* feat(#656): add Package Legitimacy module (registry-API verdicts, slopcheck optional)

Replaces the pip-install-or-degrade slopcheck prose gate with code: classifyPackage (pure, never throws) computes OK|SUS|SLOP from tunable thresholds (minAgeDays 30, minWeeklyDownloads 1000, requireRepo). checkPackages queries injectable npm/PyPI/crates registry adapters (real https with 5s timeout, degraded-not-thrown on failure); slopcheck is one optional adapter that can only escalate severity, never degrade to [ASSUMED]. 34 behavioral + property tests; boundary coverage on age and downloads (limit-1/limit/limit+1).

Known follow-up: real npm adapter must add api.npmjs.org last-week downloads fetch (currently null -> unknown-downloads). Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* feat(#656): detect Tavily/Ref/Perplexity/Jina provider keys; complete npm downloads adapter

config: add tavily_search/ref_search/perplexity/jina availability flags (env var or ~/.gsd/<x>_api_key), mirroring brave_search/exa_search/firecrawl, so the Research Provider waterfall can gate them. package-legitimacy: real npm adapter now fetches api.npmjs.org last-week downloads (bounded, degraded-not-thrown) so weeklyDownloads is populated. +12 config tests; 34 legitimacy tests unchanged.

Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* feat(#656): expose Research seam via gsd-tools query (research-plan, research-store, package-legitimacy)

Routes the L2-hybrid surface so agents reach it as CLI: 'query research-store get/put' (cache, HOME-sandboxable), 'query research-plan --input' (cache-hits + fetch plan from planResearch), 'query package-legitimacy check --ecosystem' (async registry verdicts). Commands skip .planning root resolution and appear in top-level usage. 5 behavioral runGsdTools tests; command-contract unchanged (335).

Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* docs(#656): document Research module (CONTEXT predicates, ADR-0656, architecture, changeset)

Adds GSD-RESEARCH.* + DEFECT.RESEARCH-PROVIDER-PROSE-DRIFT predicates to CONTEXT.md, ADR-0656 recording the L2-hybrid seam decision, a docs/ARCHITECTURE.md Research Module subsection, and an Added changeset fragment (pr:0, backfill on PR). Notes the #657 deferrals (agent collapse + install.js MCP mapping).

Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* chore(#656): sync inventory for research modules

Regenerate INVENTORY-MANIFEST.json and bump docs/INVENTORY.md CLI Modules count 82->85 with rows for research-store/research-provider/package-legitimacy (DEFECT.INVENTORY-DRIFT).

Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* chore(#656): eslint-ignore generated research .cjs artifacts (ADR-457)

research-store/research-provider/package-legitimacy .cjs are tsc-generated from src/*.cts, so they belong in the ESLint ignore block (lint the .cts source, not the emitted .cjs). Fixes tests/551-eslint-bin-lib-coverage.

Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* chore(#656): backfill changeset pr number to #664

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* chore(#656): satisfy eslint lint-tests gate

Fix 20 eslint errors in the new research files: use helpers.cleanup() instead of raw fs.rmSync() in tests (local/no-raw-rmsync-in-tests, Windows-EBUSY retry budget); drop redundant '| string' union members and unnecessary type assertions; deterministic object normalization in researchKey (no-base-to-string). Logic unchanged; 6180 tests still green.

Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(#656): harden package legitimacy per review (W1/W2/I3/I4)

W1: httpsGet now reads statusCode; npm/PyPI/crates map 404 -> exists:false -> SLOP (registry-existence is the #1 slopsquatting defense; previously only npm caught it). Transport made injectable (_setHttpGet) for hermetic 404 tests. W2: suspicious-postinstall is now terminal SLOP independent of the optional slopcheck adapter, and the regex drops the bare https?:// arm (over-fired on esbuild/sharp/node-gyp) for shell-exec/download-exec signatures only. I3: checkPackages now threads version to registry.lookup and adapters verify that specific version exists. I4: moreServerVerdict -> moreSevereVerdict. +11 regression tests (all RED-first); 45 total green.

Addresses review by @davesienkowski on #664. Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(#656): research-store tier coherence + freshness + version TTL (W4/I1/I2/I4)

I1: tier now derives from source (curated -> user ~/.gsd, else -> project .planning), not kind, so put-tier and get-tier can't diverge; kind is a key component only. W4: getResearch searches both tiers and returns the freshest (non-stale preferred), never letting a stale curated entry shadow a fresh web one; blank version caps TTL at 1 day (no 30d on version-blind keys). I2: atomic platformWriteSync instead of raw fs.writeFileSync on the shared global path. I4: dropped the dead ttlForSource arm. CLI get now searches both tiers. +5 RED-first regression tests; 38 green.

Addresses review by @davesienkowski on #664. Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(#656): expose classifyConfidence as a CLI route, killing dead code (W3)

Adds 'gsd-tools query classify-confidence --provider X [--verified]' so research agents get the confidence tier FROM CODE (provider waterfall + verification lever) instead of asserting it in prose. classifyConfidence previously had no runtime caller. HIGH means 'trusted provider'; --verified raises web results to MEDIUM (verification semantics documented in ADR-0656). +4 behavioral tests.

Addresses review by @davesienkowski on #664 (W3). Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(#656): close Codex adversarial-review findings (path-traversal, version-age, malformed-cache)

HIGH: research key must be 64-hex sha256 (isValidResearchKey) + resolved-path containment check in put/get + CLI validation -> blocks '../../x' arbitrary-file-write. HIGH: package legitimacy now derives publishedAt from the REQUESTED version (npm time[version], PyPI releases[version] upload_time, crates versions[].created_at) so a new malicious version of an old package can't inherit old age and evade 'too-new'. MEDIUM: getResearch validates entry shape (finite fetched_at + positive ttl + required fields) -> malformed cache entry is a miss, not fresh-forever. +regression tests (RED-first); 111 green.

Codex adversarial review (required pre-PR gate). Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(#656): close code-review correctness findings

(1) package-legitimacy CLI now rejects unknown --flags instead of silently consuming the following package as a flag value; only --ecosystem takes a value. (2) crates recent_downloads (90-day) normalized to a weekly figure before the minWeeklyDownloads threshold (was ~13x too lenient). (3) research-plan --input validates parsed JSON is an object with an Array questions before destructuring -> clean usage error instead of an uncaught TypeError on null/bad input. (4) research-store put rejects a flag value that is itself a --flag (no more storing '--source' as content). (5) planResearch skips questions whose text is not a non-empty string instead of emitting question:undefined. +13 RED-first regression tests; 143 green.

Code-review gate. Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* refactor(#657): extract researcher documentation_lookup to shared @-reference

6 researcher agents carried a near-duplicate <documentation_lookup> block; consolidate into gsd-core/references/research-documentation-lookup.md (@-included). Unifies the ctx7 CLI fallback to the safer 'command -v ctx7' guard (drops silent 'npx --yes ctx7@latest' execution in 5 agents). Behavior-preserving dedup; inventory 63->64 references. Phase A of the agent collapse.

Issue #657. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* refactor(#657): extract researcher philosophy + verification-protocol to shared @-references

philosophy and the pitfalls+pre-submission-checklist common-core were near-duplicated in project/phase researchers; consolidate into gsd-core/references/research-{philosophy,verification-protocol}.md (@-included). phase-researcher keeps its 3 extra checklist items inline. Pre-submission domains checklist made agent-agnostic so project-researcher doesn't lose features/architecture coverage. Write-contract intentionally left inline (bug-214 tests assert it verbatim). Inventory 64->66 refs. Behavior-preserving. Phase A.

Issue #657. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* feat(#657): wire gsd-phase-researcher to the Research seam (Phase B / S1)

The phase researcher now CALLS the code seam instead of carrying inline mechanics: provider waterfall -> 'gsd-tools query research-plan' (+ research-store put to cache digests); confidence-tier prose -> 'gsd-tools query classify-confidence'; slopcheck pip-install protocol -> 'gsd-tools query package-legitimacy check'. This makes the Research module a real runtime consumer (validates the seam end-to-end, addresses reviewer S1) and removes the duplicated waterfall/confidence/slopcheck prose. RESEARCH.md output contract, commit step, structured returns, and Phase-A @-includes unchanged. package-legitimacy-gate.test.cjs rewritten prose-grep -> behavioral (asserts the seam invocation).

Issue #657. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* feat(#657): wire gsd-project-researcher to the seam + add tavily/ref/jina MCP tools (Phase C.1)

project-researcher now calls gsd-tools query research-plan / classify-confidence (+ research-store put) instead of the inline provider waterfall + confidence-tier prose (mirrors the phase-researcher rewire; no package-legitimacy — phase-only). Output contract (STACK/FEATURES/ARCHITECTURE/PITFALLS/SUMMARY.md + sections, no-commit, structured returns, Phase-A @-includes) unchanged. Adds mcp__tavily/ref/jina__* to the project/phase/ui researcher tools frontmatter (Balanced provider set) so install.js MCP mapping (C.2) has a consumer.

Issue #657. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* test(#657): cover tavily/ref/jina MCP install handling + frontmatter parity guard (Phase C.2)

Investigation: exa/firecrawl have no explicit per-runtime tool-mapping — every mcp__<server>__* except context7 rides the generic passthrough (Copilot lowercases; OpenCode/Cursor/Windsurf/Augment keep as-is; Gemini auto-discovers). tavily/ref/jina are handled identically, no install path broken. Added 12 copilot-install passthrough tests + a mcp-tool-inheritance parity guard (tavily co-declared with exa, jina with firecrawl, ref present across the 3 web researchers) so the MCP set can't drift. No io.github registry ids invented (none sourceable in-repo); documented as a follow-up. 488 tests green.

Issue #657. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* feat(#657): profiles as source of truth for researcher agents + drift-guard (Phase C.3)

scripts/research-profiles.cjs declares each of the 7 researcher agents' identity + contract (name, description, color, tools, required @-includes, required gsd-tools seam calls, output-contract markers). scripts/gen-research-agents.cjs --check validates every committed agent against its profile; --write regenerates ONLY the frontmatter from profiles (body untouched) and is a verified no-op against the current agents (zero diff = fidelity). tests/research-agent-profiles.test.cjs is the DEFECT.GENERATIVE-FIX drift guard. Design note: profiles govern the generatable/contract surface rather than destructively regenerating the disparate operational prose bodies (those were deduped via @-includes in Phase A). scripts/ is not inventoried (no inventory change).

Issue #657. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(#657): complete agent provider-dispatch + parity guard; align legitimacy field; validate profiles

Adversarial-review findings: (HIGH) the seam-wired agents' Step-C dispatch only mapped 6 providers, so a planResearch result of jina/ref/perplexity/brave (reachable via the waterfall fallbacks) had no handling -> agent stall; completed both agents' dispatch to all 9 PROVIDER_WATERFALL ids + a catch-all, and added a parity test asserting agent dispatch stays in sync with research-provider PROVIDER_WATERFALL (DEFECT.GENERATIVE-FIX). (MEDIUM) phase-researcher package-legitimacy JSON example used 'package' but the module returns 'name' -> aligned. (LOW) gen-research-agents checkAgent now returns a clear failure for a malformed profile instead of throwing. +parity/validation tests (RED-first).

Issue #657. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(#656): make classifyConfidence verification-evidence-driven (W3)

Confidence conflated provider authority with claim verification — context7/ref
stamped HIGH purely by provider identity, and the only verification lever was a
self-set --verified flag. Split into two axes: provider authority (static) +
verification evidence (code-computed). HIGH now requires ground-truth
corroboration (legitimacyVerdict OK), independent of provider; authority alone
caps at MEDIUM; SLOP caps at LOW; the self-reported --verified is demoted to a
MEDIUM-only web lever. HIGH = corroborated-against-authoritative-source, not a
correctness guarantee. Adds --legitimacy-verdict to the classify-confidence CLI;
updates CONTEXT.md predicate + ADR-0656 (tier set unchanged, ADR-consistent).

Addresses davesienkowski's W3 review on #664.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#656): bind classify-confidence verdict to code, closing CLI self-grading

Adversarial review found the new --legitimacy-verdict flag was caller-supplied,
so an agent could self-assert OK->HIGH without any real legitimacy check —
reintroducing the exact self-grading hole W3 closes. Remove the free flag; the
CLI now computes the verdict via checkPackages only when --package/--ecosystem
is given (code-computed, not agent-asserted). Update the stale CLI test
(context7 alone -> MEDIUM) and extend the property test to vary legitimacyVerdict.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* feat(#717): re-base workflow size budget on bytes + document quality rationale (#719)

* feat(#717): re-base workflow size budget on bytes + document quality rationale

Re-base tests/workflow-size-budget.test.cjs from line counts to byte
counts (matches Codex's 32,768-byte project_doc_max_bytes cap; deterministic,
no tokenizer). Tier ceilings: XL=90000, LARGE=54000, DEFAULT=38000, GRACE=3000;
discuss-phase target re-expressed as <30 KB. The #597 tighten-only ratchet and
per-file budget semantics are preserved unchanged — only the unit swaps.

byteCount() uses fs.statSync().size to match `wc -c` (includes trailing
newline), deliberately not lineCount()'s newline-stripping.

Document the context-rot / attention-budget QUALITY rationale (independent of
prompt caching) in the test JSDoc and docs/ARCHITECTURE.md, plus the
Goodhart caveat: the byte budget measures one file, so the real goal is
bounded *loaded* context — eager @-imports game the proxy; legitimate
extraction is lazy. Update CONTEXT.md RULESET.WORKFLOW_SIZE_BUDGET to bytes and
remove a stale duplicate ruleset entry that still said "1800 lines".

Defers the #3182 MVP-mode split (tracked separately): MVP is a cross-cutting
concern woven through plan-phase/execute-phase, not a discrete extractable mode.

Closes #717

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* docs(#717): add changeset fragment for byte-budget re-base

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* feat(#159): auto-use existing RESEARCH.md in /gsd:plan-phase --research-phase (#718)

* feat(#159): auto-use existing RESEARCH.md in /gsd:plan-phase --research-phase

When RESEARCH.md already exists in research-only mode and neither --research
nor --view is passed, emit a one-line notice and exit cleanly instead of
prompting update/view/skip. This matches the promptless auto-use of standard
/gsd:plan-phase <N> (§5.1) and removes the §5.0/§5.1 inconsistency, making
AI-agent and CLI invocations non-interactive in the common case. The two
explicit-flag escape hatches (--research to refresh, --view to print) cover
any deviation.

Closes #159

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#159): point changeset fragment at PR #718

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* docs(#159): tighten research-phase reference register (Diataxis)

Make the 'no modifier' research-phase entries descriptive rather than
imperative and drop the trailing 'pass --research/--view' clauses, which
duplicated the adjacent --research/--view documentation. Reference docs
describe; the recovery flags are documented in their own entries. The
emitted runtime notice in the workflow keeps naming the flags (in-band
recovery), unchanged.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* chore: clean up clear-cut ESLint warnings (#732) (#734)

Pay down pre-existing error→warn lint debt. Removes dead imports/vars, unused functions, redundant regex/string escapes, and stale eslint-disable directives; converts unused `catch (_e)` to optional catch binding (src/*.cts).

No behavior change. Lint 345→125 warnings (0 errors); deferred categories (n/no-process-exit, test-sleeps, control-regex) tracked in #732 for follow-up. Full test suite green (0 failures); code-review verified all removals unused and all escape fixes semantics-preserving.

Closes #732

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* chore(lint): justify intentional no-control-regex (ANSI strip) + ratchet to error (#737)

The 5 no-control-regex warnings are all the same intentional ANSI-color-strip
pattern /\x1b\[[0-9;]*m/g across 5 test files. The \x1b (ESC) control char is
the required leading byte of an ANSI SGR sequence, so matching it is the whole
point of stripping color codes from captured CLI/console output. Add an inline
eslint-disable-next-line with justification at each site (not a refactor — the
control char is essential, not accidental), then flip no-control-regex from
warn to error so the debt can't regrow.

Refs #736

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* chore(lint): refactor magic-sleep tests to async waits + ratchet rules to error (#735)

Replace raw setTimeout/Atomics.wait synchronization sleeps in 4 test files
with a shared async delay()/waitFor() poll-for-condition helper in
tests/helpers.cjs, then flip local/no-magic-sleep-in-tests and
no-restricted-syntax from warn to error so the debt can't regrow.

- tests/helpers.cjs: add delay(ms) + waitFor(predicate, opts), exported
- bug-1974: setTimeout backoff -> await delay()
- config.test: drop Atomics.wait sleep(); async retry via await delay()
- graphify: waitForBuildStatus/cleanupHookRepo async via await delay()
- locking-bugs: 3 Atomics.wait poll loops -> await waitFor()
- eslint.config.mjs: ratchet both rules warn -> error

Refs #733

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#704): exclude } and ) from Codex path-rewrite lookbehind (no literal $gsd-core in installs) (#710)

* fix(#704): exclude } and ) from Codex path-rewrite lookbehind

Shell variable expressions like \${VAR}/gsd-core/ and command-substitution
paths like \$(cmd)/gsd-local-patches were being rewritten to \$gsd-core and
\$gsd-local-patches respectively because the negative lookbehind in
convertSlashCommandsToCodexSkillMentions did not include } or ).

Add both characters to the lookbehind set:
  (?<![a-zA-Z0-9./})])

Also adds regression test:
  tests/bug-704-codex-launcher-path-corruption.test.cjs

Closes #704

* chore: add changeset for #704

* test: use RUNTIME_ROOT_PATH in assertion to eliminate dead-code lint warning

Replace the partial hard-coded fragment '}/gsd-core/bin/' with the
existing RUNTIME_ROOT_PATH const so the assertion both compiles clean
(no unused variable) and self-documents which canonical launcher path
must survive Codex conversion intact (#704).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* chore: link changeset to PR #710

---------

Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(#706): skip rescue of already-committed SUMMARY to avoid worktree cleanup merge_failed (#709)

* fix(#706): skip rescueSummaryArtifacts when SUMMARY is already committed

rescueSummaryArtifacts now probes `git cat-file -e HEAD:<path>` before
copying a SUMMARY.md into the main checkout.  When the file is already
committed on the worktree branch, copying it as an untracked file causes
`git merge --no-ff` to abort with "untracked working tree files would be
overwritten by merge" — a permanent merge_failed cleanup-wave failure.

Fail-closed on timeout: if cat-file is unreliable we skip rescue (the
merge will surface the collision as it did before, which is recoverable).

Adds 4 new test cases in worktree-safety.test.cjs covering:
- committed SUMMARY skipped, merge succeeds (#706 regression case)
- committed SUMMARY skipped even when timeout (fail-closed)
- uncommitted SUMMARY still rescued (existing contract preserved)
- rescue failure on ENOSPC still propagates (unchanged)

Closes #706

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* chore: add changeset for #706

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(#706): treat cat-file exit 128 as uncertain — skip rescue (fail-closed)

The previous guard skipped rescue only when `exitCode === 0` (committed) or
`timedOut`. Any other non-zero exit, including `128` (fatal git error: corrupt
object store, unborn HEAD, missing repo), fell through and PROCEEDED with
rescue — potentially re-creating the #706 untracked-file merge collision.

Fix: rescue ONLY when `exitCode === 1` (cat-file definitively reports the
object absent). All other outcomes — 0 (committed), 128 (fatal), null/SIGTERM
(timeout), or any other code — are treated as "uncertain → skip rescue".

Also corrects the JSDoc bullet that still referenced `git ls-files
--error-unmatch` (the old mechanism); updated to `git cat-file -e HEAD:<relPath>`.

Regression test added: asserts rescue is SKIPPED when cat-file returns exit 128,
leaving the merge to surface the issue safely rather than silently copying an
already-committed file.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* chore: link changeset to PR #709

---------

Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>

* refactor(scripts): replace process.exit() with ExitError + runMain handler (#739) (#740)

Part 1 of 2 of the n/no-process-exit cleanup (umbrella #738): convert every
process.exit() call in standalone scripts/** CLIs to the rule-compliant pattern.

- New shared helper scripts/lib/cli-exit.cjs: ExitError(code,message) + runMain()
  which translates a thrown ExitError / returned number into process.exitCode
  (never process.exit()), flushing output and still firing process.on('exit').
- main()-based entrypoints: throw new ExitError(code) for errors, return <code>
  for verdicts; invoked via runMain(main). Child exit codes preserved via return.
- top-level-only scripts: imperative body extracted into main() so mid-flow
  aborts (throw ExitError) actually halt; pure consts/helpers stay at module scope.
- diff-touches-shipped-paths.cjs: stdin event handling restructured to an async
  read so the whole flow runs under runMain; uncaughtException/unhandledRejection
  nets replaced by an in-band catch that preserves EXIT_ERROR=2.

Exit codes verified unchanged for every converted script (success/error/help and
the 0/1/2 semantic codes in diff-touches). Rule stays warn here; flipped to error
in part 2 (#738) once gsd-core/bin/** is also clean.

Refs #739

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* refactor(bin): replace process.exit() in CLI entrypoints + ratchet rule to error (#738) (#741)

Part 2 of 2 of the n/no-process-exit cleanup (completes umbrella #738; part 1
was #739/scripts). Converts the 20 flagged process.exit() calls in the three
hand-written gsd-core/bin CLI entrypoints and flips n/no-process-exit to error.

- New src/cli-exit.cts -> gsd-core/bin/lib/cli-exit.cjs (ExitError + runMain),
  the gsd-core-side equivalent of scripts/lib/cli-exit.cjs; registered in
  .gitignore, eslint ignores, and the inventory manifest like its siblings.
- gsd-tools.cjs: 13 apply-prompt-budget exits -> throw ExitError; main()->runMain.
- verify-reapply-patches.cjs: 6 exits -> throw ExitError / return verdict; runMain.
- check-latest-version.cjs: 1 exit -> return verdict; runMain.
- eslint.config.mjs: n/no-process-exit warn -> error.

Scope note: the gsd-core/bin/lib/*.cjs modules (core, state, profile-pipeline,
roadmap-command-router, adr-parser, ui-safety-gate) are tsc-generated and
eslint-ignored (ADR-457), so their process.exit calls were never flagged and are
intentionally left untouched. Only the linted hand-written entrypoints are in scope.

Exit codes verified unchanged for all three entrypoints.

Closes #738

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* refactor(#720): lazy-load MVP-only reference bodies on non-MVP runs (#746)

* refactor(#720): lazy-load MVP-only reference bodies (eager @-import → gated Read)

Convert eager @-imports of MVP-only reference bodies into lazy "Read" instructions
gated on MVP_MODE / WALKING_SKELETON / MVP+TDD, so non-MVP planning/execution runs
no longer pull MVP guidance into context. Covers both the workflow files and the
planner/executor agent definitions (the dominant context-cost path):

- workflows/plan-phase.md: planner-mvp-mode.md + skeleton-template.md (L146/936/937/941)
- workflows/execute-phase.md: execute-mvp-tdd.md halt-report ref, now gated on gate-trip (L191)
- agents/gsd-planner.md: planner-mvp-mode.md, user-story-template.md, skeleton-template.md
- agents/gsd-executor.md: execute-mvp-tdd.md

The dedicated always-MVP mvp-phase workflow keeps its eager imports (intentional).
Behaviour is unchanged; non-MVP runs simply carry less loaded context. Adds a
regression guard mirroring the discuss-phase lazy-load test, and documents the
conformance in docs/ARCHITECTURE.md.

Refs #720

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* docs(#720): add changeset fragment (pr #746)

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* refactor(#712): replace Codex slash-command denylist lookbehind with positive-boundary match (#747)

* refactor(#712): replace Codex slash-command denylist lookbehind with positive-boundary match

The hyphen-style /gsd-<cmd> -> $gsd-<cmd> conversion in
convertSlashCommandsToCodexSkillMentions used a negative-lookbehind DENYLIST
enumerating characters that must NOT precede a real mention. #637 -> #704 showed
this is an unbounded treadmill: each new unanticipated preceding char (/, ., word
chars, then }, )) leaked the same path-corruption bug class, and a backtick-wrapped
path (`/gsd-core/workflows/update.md`) still leaked through.

Replace it with a POSITIVE two-boundary definition of a mention:
  1. Left: opens at start-of-string, whitespace, or an inline-prose delimiter
     (backtick/quote/paren/bracket).
  2. Right: the command token is not followed by a path separator `/` (a path
     continues, a command does not). The (?![a-z0-9/-]) lookahead also blocks
     regex backtracking to a shorter command.

This closes the whole class by construction (no preceding-char denylist to
maintain) and fixes the backtick-wrapped-path corruption the #704 test
documented as a pre-existing gap, while preserving conversion of legitimate
backtick-wrapped mentions (e.g. CONTEXT.md's `/gsd-execute-phase` lists).

The colon-style /gsd: replace is intentionally left unguarded (it never appears
as a filesystem path segment) and is annotated as such.

Tests assert the regex directly (function now exported) across a convert/
don't-convert matrix plus one end-to-end pipeline assertion for the headline
backtick-path case.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#712): add changeset fragment for PR #747

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#730): scope current-milestone Phase Details section in roadmap parser (#748)

`extractCurrentMilestone()` scoped the current-milestone window to its
`## Phases` checklist subsection and terminated at the milestone's own
`## Milestone … (Phase Details)` heading, so the `### Phase N:` detail
headers fell outside scope. Every parser-backed command — `init.phase-op`
(and thus `/gsd:discuss-phase`, `/gsd:plan-phase`), `state`, `roadmap list`,
and `validate health` (W006) — therefore could not resolve phases of any
milestone after the first until a `.planning/phases/` directory already
existed, blocking discuss/plan.

The parser now additionally includes the current milestone's `(Phase Details)`
section in scope, located via the already-computed version matches and anchored
(boundary-aware) to the selected milestone's version token so sibling
sub-milestones sharing a version prefix do not cross-pollinate. The existing
heading selection and primary window are unchanged.

Adds tests/bug-730-milestone-phase-details-scope.test.cjs covering the
two-milestone reproduction, first-milestone non-regression, direct
getRoadmapPhaseInternal resolution, validate-health W006 visibility, a
three-milestone roadmap, and the closed-sibling sub-milestone case.

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#683): auto-degrade phase execution to sequential on worktree base mismatch (#749)

* fix(#683): auto-degrade phase execution to sequential on worktree base mismatch

Claude Code forks worktree-isolated executors off the repository default
branch (origin/HEAD), not the orchestrator's HEAD. Running /gsd-execute-phase
on a branch diverged from the default (unmerged milestone/feature branch) left
every executor without the phase's plan files and tripped the
worktree-branch-check guard with `exit 42` — 100% reproducible, all OSes.

- New module src/worktree-base-ref.cts: HEAD-vs-fork-base drift detection
  (origin/HEAD with symbolic-ref fallback) and no-clobber worktree.baseRef
  management, exposed as `worktree base-check` / `worktree set-baseref`.
- execute-phase.md: pre-dispatch, for Claude Code with worktrees enabled,
  auto-degrades the run to sequential on the main tree when a base mismatch
  is detected, recommending worktree.baseRef:"head". The exit-42 guard stays
  as a backstop.
- Installer: fresh local Claude installs set worktree.baseRef:"head" in
  .claude/settings.local.json (no-clobber, respecting an explicit shared
  settings.json value); upgrades print an opt-in notice pointing at
  `gsd-tools worktree set-baseref`.
- Docs: how-to guide, CLI/config reference, planning-config cross-ref.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#683): auto-apply worktree.baseRef on upgrade; gate fresh+upgrade on use_worktrees

Per maintainer direction: on a local Claude Code UPGRADE, set
worktree.baseRef:"head" automatically (no opt-in notice) when the project's
workflow.use_worktrees is enabled, instead of merely printing a remediation
notice. For consistency the FRESH path is now gated the same way: both paths
compute worktrees-enabled once (bounded walk-up read of .planning/config.json,
default enabled unless workflow.use_worktrees === false) and apply the
no-clobber baseRef only when enabled — never overwriting an explicit value in
settings.local.json or a shared settings.json. gsd-tools worktree set-baseref
remains for manual use. Docs + changeset updated; tests hardened (file-exists
assertions, fresh+disabled case, upgrade idempotency).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#683): measure workflow byte-budget on LF, fixing Windows-only CI failure

The workflow-size-budget test failed only on Windows: git checks out the .md
files as CRLF (no eol=lf in .gitattributes) and byteCount used
fs.statSync().size (raw on-disk bytes), counting an extra \r per line. That
inflated execute-phase.md — the XL high-water-mark file pinned near its ceiling
by the tighten-only ratchet — from 88492 LF bytes to ~90245 on Windows, over
the 90000 XL ceiling, while passing on the LF-checkout Mac/Linux runners.

The ceilings are explicitly "calibrated against raw `wc -c`" on an LF checkout,
so the measurement should be LF-based on every platform. byteCount now reads the
file and counts Buffer.byteLength after stripping CR, making the budget
platform-independent (a no-op on LF checkouts; verified statSync === normalized
for all 88 workflow files). No ceilings changed. Added a regression test
asserting CRLF and LF content of the same file count identically.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#683): make worktree-base-ref test path mocks Windows-safe (path.join)

tests/worktree-base-ref.test.cjs keyed its injected readFile/writeFile mocks
(and a few expected `file` values) with forward-slash template literals like
`${claudeDir}/settings.local.json`. The module composes those paths with
path.join(), which emits backslashes on Windows, so the mock keys never matched
the module's lookup → readFile returned null → resolveEffectiveBaseRef /
cmdWorktreeBaseCheck / cmdWorktreeSetBaseRef (and the JSONC variants) failed on
the Windows full-test runner only (they passed on Mac/Linux, and the install
tests passed because they use the real filesystem). The module is correct;
only the test fixtures hardcoded '/'.

All mock keys and path assertions now use path.join(base, ...) mirroring the
module, so they match on every platform (no-op on POSIX). 19 path references
across 16 lines.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* feat(#703): add --granularity override flag to /gsd:plan-phase (#750)

* feat(#703): add --granularity override flag to /gsd:plan-phase

Add a `--granularity <coarse|standard|fine>` flag to /gsd:plan-phase that
overrides the configured planning granularity for a single invocation.

The override is a new highest-priority tier above the existing precedence
chain (granularities[phaseType] -> granularity -> planning.granularity ->
'standard') in resolveGranularityInternal; when the flag is absent, resolution
is byte-for-byte unchanged. cmdInitPlanPhase now resolves with phaseType
'planning' so granularities.planning participates, and emits the resolved
value in the init JSON, which the plan-phase workflow forwards to the planner
prompt. Invalid values are rejected at the CLI boundary via a shared
assertValidGranularityOverride helper.

Closes #703

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#703): set changeset pr to 750

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#751): recognise config-set prototype-pollution guard in CodeQL + test dynamic-key vectors (#752)

CodeQL alert #26 (js/prototype-pollution-utility) kept firing on setConfigValue
because its dataflow does not trace the #663 Set-based, pre-loop keys.some(...)
forbidden-key check as a sanitising barrier on the write site.

- src/config.cts: replace the Set + pre-loop check with inline literal
  comparisons (key === '__proto__' || 'prototype' || 'constructor') on the exact
  key used to index `current`, immediately before each write (intermediate keys
  in the descent loop, plus the final key). Same forbidden set, same error
  message and ERROR_REASON.CONFIG_PARSE_FAILED — behaviour unchanged from #663,
  but the barrier is now CodeQL-recognised.
- tests/config.test.cjs: add regression tests for schema-valid dynamic-prefix
  keys (agent_skills.__proto__, agent_skills.constructor, agent_skills.prototype,
  features.__proto__, review.models.constructor) that pass the isValidConfigKey
  schema gate and reach the guard. Each asserts the guard's own message fires
  (not the schema gate's "Unknown config key") and Object.prototype is not
  polluted. The prior #663 tests never reached the guard — their keys are
  rejected by the schema gate first — so the guard's real attack surface was
  untested.

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* feat(#25): scope gsd-verifier Step 7b to enumerate-or-single-test; forbid full-suite re-runs (#753)

* feat(#25): scope gsd-verifier Step 7b to enumerate-or-single-test; forbid full-suite re-runs

Step 7b's lone test example (`npm test -- --grep "$PHASE_TEST_PATTERN"`) is
mocha/vitest/jest-specific, where `--grep` filters which tests *execute*. Models
generalized it to `cargo test --workspace 2>&1 | grep X` (runs the whole suite,
filters only *output*) and repeated it once per must-have, adding minutes per
verification with no new evidence after the first run.

Replace the example with language-agnostic guidance: prove a test EXISTS via
enumeration (`cargo test -- --list` / `pytest --collect-only` / `npx vitest
list` / `go test -list`), and prove it PASSES via a single named test
(`cargo test <name> -- --exact` / `pytest -k` / `npx vitest run -t`). Add a
Spot-check constraint forbidding more than one full-suite run per verification
or piping a full run through grep per must-have, while still permitting one
saved run + grep when a full run is genuinely required. docs/AGENTS.md gains a
one-line Key-behaviors note, and a new test asserts the Step 7b content.

Scoped per the maintainer decision on the issue: folded into Step 7b (no new
top-level Step 7a) with no VERIFICATION.md label changes.

Closes #25

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#25): add Changed changeset fragment for PR #753

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* feat(#52): add agent_skills_security.trusted_global_roots allowlist for global skills (#754)

* feat(#52): add agent_skills_security.trusted_global_roots allowlist

Opt-in allowlist so a global: agent skill whose SKILL.md realpath resolves
outside the default global skills base (e.g. ~/.claude/skills) is accepted
when its real target lies under a user-declared trusted root. Default [] is
byte-identical to prior behavior; the symlink-escape guard is preserved and
simply re-applied against each declared root.

- src/security.cts: loadTrustedGlobalRoots — tilde-expand (~ and ~/), reject
  project-relative and dangerously broad roots (filesystem/UNC root, homedir),
  realpath-canonicalize each root every run and drop non-existent ones.
- src/init.cts: on base-check failure the guard consults the trusted roots
  (hoisted out of the loop); emits a stderr NOTE when a skill is accepted via
  a trusted root so the widened boundary is visible.
- src/core.cts: thread agent_skills_security through loadConfig.
- config-schema.manifest.json: allow the new key path.
- docs/CONFIGURATION.md: document the option and its security model.
- tests/agent-skills.test.cjs: unit + end-to-end CLI coverage (regression,
  feature, negative, broad-root hardening, stderr NOTE).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* docs(#52): add changeset fragment for trusted_global_roots (#754)

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* refactor(#651): consolidate verification-status routing into one queryable seam (#755)

* refactor(#651): consolidate verification-status routing into one queryable seam

The passed/gaps_found/human_needed verification status was re-encoded as
bare strings across three prose surfaces (gsd-verifier emits, execute-phase
routes, ship gates), each independently deciding the per-status next action
with no parity coupling — the DEFECT.GENERATIVE-FIX class.

Give the enum one home: src/verification.cts (-> bin/lib/verification.cjs)
exposing `gsd_run query verification.status <phaseDir>` returning a typed
{status, next_action, next_command}. ship.md and execute-phase.md now consume
the query instead of re-deriving the routing in prose; gsd-verifier.md points
at the shared vocabulary as the single emitter (values unchanged).

Also fixes the latent broad-grep status misread (DEFECT.FRONTMATTER-SCALAR-
BROAD-GREP): execute-phase.md read `grep "^status:"` over the whole report, so
a body `status:` line could misroute a valid phase. Extraction is now
frontmatter-scoped in one place. A parity test fails if a verifier status
gains no route. Lands the two CONTEXT.md DEFECT entries captured on the issue.

Closes #651

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#651): set changeset pr to 755

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#758): trigger draft-PR auto-close on pull_request_target (#760)

Bare `pull_request` hands fork PRs a read-only GITHUB_TOKEN, so the
close/comment API calls 403 and a first-time/external contributor's draft
PR survives — bypassing the auto-close for exactly the population the job
targets. Switch to `pull_request_target`, which runs in the base-repo
context with a write-capable token even for fork PRs. Safe because the job
never checks out or executes PR-supplied code; it only reads event metadata
and calls the GitHub API. The minimal `permissions: pull-requests: write`
block still constrains the token.

Add a regression guard in tests/workflow-maintainer-skip.test.cjs asserting
the workflow triggers on pull_request_target and not bare pull_request.

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* docs(#58): add ADR for Runtime Install Policy Module boundary (#762)

Record the Runtime Install Policy Module decision and ownership
boundary: install policy projects a pure, typed install plan by
composing artifact placements (ADR-3660) and command text (ADR-0009)
plus per-runtime config intentions, with no filesystem IO; runtime
adapters consume the plan and execute concrete file mutations and
format-specific config rendering. Explicitly records what stays
outside the policy module (TOML/JSON/Markdown serialization, merge
semantics, filesystem effects).

Adds the ADR index row in docs/adr/README.md and a glossary entry in
CONTEXT.md. Leads the installer-refactor chain (#58 -> #60 -> #56).

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* feat(#759): non-destructive CHANGELOG preview in the rc release job (#763)

The rc action publishes a release candidate to @next for testing but
never surfaces the curated CHANGELOG section for the version under test —
render only runs destructively at finalize (#715), so there was no safe
way to preview the upcoming notes during the RC window.

Add a --preview mode to scripts/changeset/cli.cjs cmdRender: it renders
the dated release section to stdout via the existing renderChangelog/
serializeChangelog path (with priorChangelog: null, so only the new
section is emitted), reuses the shared injectEmptyPlaceholder helper for
zero-fragment releases, and returns WITHOUT writing CHANGELOG.md or
deleting any .changeset fragment. Wire a "Preview CHANGELOG" step into
the rc job that renders to a file (standalone command, so a malformed
fragment fails the step) and cats it to the job summary and log.

Closes #759

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* feat(#761): add scheduled base-context sweep to close SHA-branch-evading draft PRs (#765)

close-draft-prs.yml (on pull_request_target after #760) cannot close fork draft
PRs whose head branch name looks like a Git SHA — GitHub never dispatches
pull_request_target for such branches, and a pull_request run from a fork gets a
read-only token. So a draft PR on a SHA-named fork branch evades the auto-close.

Add close-draft-prs-sweep.yml: a schedule (every 6h) + workflow_dispatch sweep
running in base-repo context with pull-requests: write that paginates open PRs,
filters to non-OWNER/MEMBER/COLLABORATOR drafts, and closes + comments them with
the identical policy/message as the event-driven workflow. Re-fetches each
candidate before mutating (TOCTOU guard), closes before commenting so
enforcement is never gated on the explanatory comment, and core.setFailed on
partial failures. The per-PR workflow remains the fast path; this is the
safety net for the documented residual bypass.

Extends tests/workflow-maintainer-skip.test.cjs with structural guards locking
the triggers, write permission, maintainer carve-out, pagination, and message.

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* fix discord release changelog announcements

* test(#339): regression guard for gsd-sdk refs in runtime surfaces (#691)

* test(#339): add regression guard for gsd-sdk refs in runtime surfaces

Lock in the already-clean runtime surface so a retired `gsd-sdk`/`GSD_SDK`
reference cannot creep back into a shipped prompt or hook. Scans
gsd-core/workflows, gsd-core/references, commands/gsd, agents, and hooks
(excluding the gitignored dist/ build artifact).

Complements gsd-tools-path-refs.test.cjs, which only catches the
`gsd-sdk query` binary form; this catches any runtime reference. A second
test guards against an empty sweep so a future dir rename can't silently
turn the guard into a no-op.

Intentionally does NOT touch bin/install.js (live stale-package-detection
mechanics per #339 triage) or CI/lint scripts (legitimate stale detection).

Refs #339

* test(#339): split file content on /\r?\n/ for Windows CRLF parity

The windows-test-parity-guard lint requires test files that readFileSync +
split to use /\r?\n/, not '\n', so CRLF files don't leave a trailing \r.
New test files are not in the PR #3649 allowlist.

* test(#339): cover .sh/.json runtime files in workflows surface

Address #691 review: the gsd-core/workflows surface scanned only .md,
silently skipping two deployed runtime files — _runtime-launcher.snippet.sh
(synced into every hook) and discuss-phase/templates/checkpoint.json. Add
.sh/.json so the guard covers all 290 deployed runtime files (was 288/290),
not just the .md subset.

* test(#339): cover templates/contexts surfaces + per-ext empty-sweep guard

Address PR #691 review (trek-e):
- Add gsd-core/templates and gsd-core/contexts to RUNTIME_SURFACES —
  both are deep-copied by the installer and runtime-loaded via
  @~/.claude/gsd-core/templates/*.md anchors, so a reintroduced gsd-sdk
  ref there would have slipped past the guard. (major)
- Reword the bin/install.js exclusion rationale: it has zero gsd-sdk refs
  today (subsystem removed in #515, shim retired in #522); the real reason
  it is excluded is that it is installer code, not a deployed prompt/hook
  surface. (minor)
- Make the empty-sweep guard assert coverage per configured extension, not
  per surface — .md files alone kept gsd-core/workflows green even if
  .sh/.json were dropped, silently un-covering _runtime-launcher.snippet.sh
  and discuss-phase/templates/*.json. (low)

---------

Co-authored-by: Tom Boucher <trekkie@nomorestars.com>

* refactor(#60): make runtime config adapter registry explicit (#795)

* refactor(#60): make runtime config adapter registry explicit

Replace scattered inline `runtime === '...'` config-mutation branching in
bin/install.js with an explicit, typed adapter registry. The new
src/runtime-config-adapter-registry.cts maps each of the 15 supported
runtimes to a config intent { installSurface, writesSharedSettings,
finishPermissionWriter }; install()/finishInstall() dispatch by resolved
intent instead of runtime-name checks (cursor/windsurf/trae collapse to one
profile-marker-only branch).

Behavior-preserving: the same config files are written for the same runtimes
(opencode still writes both settings.json and its permissions; kilo writes
only its permissions; codex minimal-mode and opencode GSD_TEST_MODE guards
unchanged). Unknown runtimes fail loudly via TypeError, with an Object.hasOwn
barrier so prototype-chain keys (__proto__/constructor) also throw rather than
returning a bogus intent. Leads the installer-refactor chain (#58 -> #60 ->
#56), building on ADR-58.

Closes #60

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#60): add changeset for runtime config adapter registry

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* docs(#60): register Runtime Config Adapter Registry in CONTEXT.md glossary

Per docs/contributor-standards.md, every new Module/seam must get a
`### <Name>` entry under the domain glossary. Adds the entry for the
runtime-config-adapter-registry seam introduced in this PR (interface,
policy boundary, source file, ADR-58 / #60 cross-references).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* feat(#764): skip cross-platform test matrix for docs-only and inert-CI PRs (#798)

test.yml had no paths filter and the ci-test-scope classifier treated docs/
and every .github/workflows/* as code_changed, so documentation edits and
product-irrelevant automation tweaks still spun up the full Linux/Windows/macOS
matrix. Narrow the heavy matrix to changes that can actually affect the product
or the test pipeline.

- ci-test-scope.cjs: drop docs/ from code_changed (docs-only -> full skip; the
  required-tests fan-in still reports green). Add src/ to code_changed (it was
  missing -> a source-only PR previously skipped all tests). Add INERT_WORKFLOWS
  allowlist + isInertCi() + an "inert CI" rule, and a product_changed output that
  gates the heavy test/coverage jobs. Fail-safe: any workflow not on the inert
  allowlist defaults to the full matrix. A module-load assertion throws if a
  PROTECTED_WORKFLOWS entry (test/install-smoke/mutation/security-scan/release)
  is ever added to the inert set, so a weakening edit fails CI loudly.
- test.yml: keep the static 3-lane matrix (so the H1 shell-policy linter can
  still statically verify the Windows lane), gate test/coverage on
  product_changed, add a lightweight ubuntu-only test-inert job, and branch the
  required-tests fan-in on product_changed.
- docs-required.yml: run docs-parity-live-registry (gated on docs/ changes) so
  pure-docs PRs still catch live-registry drift without the matrix.
- tests: cover docs-only, inert-only, src/, pipeline, unknown-workflow fail-safe,
  mixed escalation, the code_changed=false -> no-lanes invariant, and protected-
  workflow tamper-evidence.

Closes #764

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* feat(#766): distribute gsd-core as a native Claude Code plugin (#797)

* feat(#766): distribute gsd-core as a native Claude Code plugin

Add an additive .claude-plugin/plugin.json manifest plus hooks/hooks.json so gsd-core can be installed as a first-class Claude Code plugin (marketplace or zero-friction @skills-dir), with /gsd-core: namespaced commands and lifecycle management — alongside the unchanged npm/file-copy installer.

- .claude-plugin/plugin.json: validated with 'claude plugin validate --strict'
- hooks/hooks.json: mirrors the installer's always-on Claude hook wiring via ${CLAUDE_PLUGIN_ROOT}
- package.json: ship .claude-plugin in the npm tarball
- tests/issue-766-plugin-manifest.test.cjs: manifest + always-on-hook-contract drift guards
- docs: install-on-your-runtime.md + FEATURES.md

Closes #766

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* docs(#766): add ADR-766 + glossary entry for Claude Code Plugin Manifest Module

Record the plugin manifest as the Seam projecting gsd-core's artifact surfaces onto the Claude Code plugin contract (sibling of the Runtime Artifact Layout Module, ADR-3660), with the defined kind->field mapping and the always-on hook projection rule.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* refactor(#56): retire legacy runtime directory helpers into runtime-homes projection (#802)

* refactor(#56): retire legacy runtime directory helpers into runtime-homes projection

Consolidate per-runtime global config-dir resolution onto the single
canonical projection runtime-homes:getGlobalConfigDir. Extend it with the
explicitDir override (CLI --config-dir) and the opencode/kilo
OPENCODE_CONFIG/KILO_CONFIG file-path precedence the installer helpers had,
making it byte-for-behavior equivalent to the old getGlobalDir across all
15 install runtimes.

Delete bin/install.js's getGlobalDir/getOpencodeGlobalDir/getKiloGlobalDir
(and the orphaned local expandTilde), repoint all 9 call-sites, and remove
getGlobalDir from module.exports (net -242 lines in the installer). Migrate
the 5 test importers to the canonical projection; harden default/XDG
assertions against ambient *_CONFIG env vars. getAgentsDir now respects
OPENCODE_CONFIG/KILO_CONFIG consistently with the installer (intentional
convergence). Update CONTEXT.md Installer Module entry.

Completes the installer-refactor chain #58 -> #60 -> #56.

Closes #56

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#56): add changeset for runtime directory helper retirement

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* feat(#786): elevate GitHub Copilot installer — lifecycle hook + AGENTS.md (#804)

* feat(#786): elevate Copilot installer with lifecycle hook + AGENTS.md

Emit a self-contained sessionStart hook config (.github/hooks/gsd-session.json
local, ~/.copilot/hooks/gsd-session.json global) and write AGENTS.md at the repo
root (Copilot CLI reads it as primary instructions) alongside
copilot-instructions.md. The hook is an inline `command` hook (no separate hook
script), so it cannot dangle. Uninstall removes both and preserves user content.

Verified against GitHub Copilot CLI primary docs: hooks-configuration (camelCase
events, version+hooks shape, inline bash/powershell command hooks) and
add-custom-instructions (AGENTS.md read at repo root as primary instructions).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#786): set changeset pr number to 804

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#783): resolve Kilo global skills base to ~/.kilo/skills (#806)

* fix(#783): resolve Kilo global skills base to ~/.kilo/skills

getGlobalSkillsBase('kilo') returned ~/.config/kilo/skills (the XDG config
dir), but Kilo Code discovers global skills from ~/.kilo/skills/ (the .kilo
dir in HOME), independent of the kilo.jsonc config dir. Add a HOME-relative
special case so the resolver matches Kilo's actual discovery path.

The config dir (~/.config/kilo) and the installer's command/ path are
correct and unchanged. This corrects the path used by doctor/status and
agent-skills-block resolution; the installer writes commands (not skills)
for Kilo, so no files were being written to the wrong location.

Closes #783

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#783): set changeset pr to 806

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* feat(#785): write .cursor/commands/ Cursor 1.6 slash-command surface (#805)

* feat(#785): write .cursor/commands/ as Cursor 1.6 slash-command surface

Cursor 1.6 (released 2025-09-12) introduced plain-markdown slash commands
in `.cursor/commands/<name>.md` — no frontmatter, invocable via `/` in the
Agent input. GSD previously emitted only `~/.cursor/skills/` for Cursor.

This PR wires a second artifact kind for `cursor` in
`runtime-artifact-layout.cts`: `convertedCommandsKind('commands', 'gsd-',
'convertClaudeCommandToCursorCommand', configDir)`. The new kind applies the
same `convertClaudeToCursorMarkdown` transforms (tool renames, brand
substitution, slash-command normalisation) and then strips YAML frontmatter
so the output is plain prose. Skills output is unchanged.

`stageCommandsForRuntimeFlat` in `install-profiles.cts` stages each source
`.md` as a flat `<stem>.md` in a temp dir; the existing `_copyStaged` commands
path then prefixes and copies to `<configDir>/commands/`.

`.cursor/mcp.json` is explicitly OUT OF SCOPE: GSD ships no MCP server; the
`mcpServers` schema cannot be usefully populated by the installer.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* refactor(#785): address review nit

---------

Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(#787): elevate Cline — .clinerules/ dir form, PreToolUse hook, AGENTS.md (#803)

* feat(#787): elevate Cline — .clinerules/ dir form, PreToolUse hook, AGENTS.md

Migrate the installer's Cline output from a single-file .clinerules to the
.clinerules/ directory form (.clinerules/gsd.md), which is the prerequisite for
Cline's v3.36 hooks (a path cannot be both a file and a directory). Add a
.clinerules/hooks/PreToolUse lifecycle hook implementing Cline's JSON stdin ->
{cancel,errorMessage,contextModification} protocol; it guards .planning/
artifacts and fails open. On global installs, merge GSD instructions into the
cross-tool ~/.agents/AGENTS.md target (marker-delimited, merge-safe). A legacy
single-file .clinerules is migrated in place; --uninstall removes the new
artifacts and strips the AGENTS.md GSD block.

Also fixes the uninstall targetDir for Cline local installs (it pointed at
./.cline instead of the project root) and re-runs writeManifest after the
Cline artifacts are written so they are hash-tracked.

Self-contained: implemented independently of the #782 Cline skills work.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#787): address review findings

- Scope PreToolUse hook path-walk to PATH_KEY fields only (eliminates false
  positive when doc body content mentions .planning/)
- Use lstatSync + isSymbolicLink() for migration guard so GSD never writes
  through a user's symlinked .clinerules into an external directory
- Add regression tests for both cases

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* chore(#787): set changeset pr: 803

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#812): honor COPILOT_HOME in Copilot global config-dir resolution (#814)

* fix(#812): honor COPILOT_HOME in Copilot global config-dir resolution

getGlobalConfigDir('copilot') resolved the global config directory using
only --config-dir > COPILOT_CONFIG_DIR > ~/.copilot, ignoring the
COPILOT_HOME env var. Per GitHub's Copilot CLI docs, COPILOT_HOME
overrides the default ~/.copilot location (and user-level hooks are read
from $COPILOT_HOME/hooks/), so a global --copilot install wrote all
artifacts (skills, agents, copilot-instructions.md, the gsd-session.json
hook) to ~/.copilot even when the user relocated their Copilot home,
making them undiscoverable by Copilot CLI.

Mirror the codex/CODEX_HOME branch: precedence is now
--config-dir > COPILOT_CONFIG_DIR > COPILOT_HOME > ~/.copilot. Uninstall
uses the same resolver, so it stays symmetric.

Also: document COPILOT_HOME in the installer --help notes, the
USER-GUIDE env-var table, and the installer-migrations Copilot row; and
clear COPILOT_HOME in the two default-path test suites so they stay
hermetic now that the resolver honors it.

Closes #812

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#812): add changeset for PR #814

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* feat(#788): expand Qwen Code hook-event coverage (#807)

* feat(#788): expand Qwen Code hook-event coverage to 4 new events

Register SubagentStop, Stop, PreCompact (gsd-context-monitor.js) and
UserPromptSubmit (gsd-prompt-guard.js) in the Qwen Code installer.
Guard is isQwen-only — Claude Code and all other runtimes are unchanged.
Uninstall loop extended to include the 4 new event names.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(#788): reconcile to 3 Qwen-only events — defer UserPromptSubmit

gsd-prompt-guard exits unless tool_name is Write|Edit (PreToolUse
payload shape); UserPromptSubmit carries raw user-prompt text with no
tool_name field, so wiring it would be a silent no-op.  Deferred to a
follow-on issue.

Artifacts made consistent:
- bin/install.js: drop UserPromptSubmit registration block; uninstall
  loop drops UPS from event list
- .changeset/788-qwen-hook-events.md: corrected to 3 events + rationale
- docs/how-to/install-on-your-runtime.md: remove UPS row from hook table
- tests/enh-788-qwen-hook-events.test.cjs: assert UPS NOT registered;
  fix idempotency suite to persist settings between installs; drop
  UPS-specific assertions

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* chore(#788): update changeset PR number to #807

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* test(#788): prune stale install-bucket allowlist entry for enh-788 test

---------

Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>

* enhancement(#782): emit gsd skills to ~/.cline/skills for Cline >= v3.48 (#809)

Cline added a global skills system (~/.cline/skills/<name>/SKILL.md) in
v3.48.0, but gsd treated Cline as rules-only and emitted zero skills
(getGlobalSkillsBase('cline')=null, empty artifact kinds). This makes gsd
emit skills for Cline at global scope, alongside the existing .clinerules.

- runtime-homes: getGlobalSkillsBase('cline') -> ~/.cline/skills (was null)
- runtime-artifact-layout: cline emits a skills kind for GLOBAL scope only
  (local stays .clinerules-only), mirroring claude's scope dispatch
- install.js: convertClaudeCommandToClineSkill emits name+description-only
  SKILL.md frontmatter (Cline/agentskills.io spec; no Claude-specific
  allowed-tools/argument-hint/agent), hyphen-normalized + .cline/-rewritten
  body; global cline routed through the skills path while .clinerules is
  still written; _applyRuntimeRewrites cline case handles custom
  CLINE_CONFIG_DIR; convertClaudeToCliineMarkdown also rewrites bare
  ~/.claude and CLAUDE_CONFIG_DIR
- docs: install-on-your-runtime.md documents Cline global skills vs local rules
- tests: converter (name+description-only), global emission, skills+.clinerules
  coexistence, scope-aware layout, custom-dir paths, idempotency

Closes #782

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* feat(#790): emit Augment slash commands (~/.augment/commands/) (#808)

Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>

* enh(#784): emit native skills for OpenCode + Kilo runtimes (#810)

* feat(#784): emit native skills for OpenCode + Kilo runtimes

OpenCode and Kilo share a config schema and both discover on-demand
skills from skills/<name>/SKILL.md. The installer previously emitted
only flat commands (command/) and file-based agents (agents/) for these
runtimes. Add a shared OpenCode-family skill writer that stages each GSD
command as a spec-compliant SKILL.md (name matching the directory,
description 1-1024 chars), wired through the runtime artifact layout so
uninstall cleans skills/ automatically. Skills respect the active
install profile.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#784): correct skill body paths + preserve user dev-preferences

Address adversarial-review findings:
- Add opencode/kilo cases to _applyRuntimeRewrites so staged SKILL.md
  bodies are re-pointed from the converter's hardcoded default config dir
  to the actual install target (fixes --local / --config-dir installs;
  commands/agents already did this by applying pathPrefix pre-conversion).
- Preserve user-owned skills/gsd-dev-preferences across reinstall in
  installOpencodeFamilySkills (snapshot+restore around the gsd-* prune),
  matching installRuntimeArtifacts.
- Export installOpencodeFamilySkills and add regression tests.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#784): guarantee command/skill body parity, fix kilo-alt double-rewrite

Follow-up adversarial-review found the post-conversion path rewrite could
double-rewrite custom Kilo dirs (kilo -> kilo-alt -> kilo-alt-alt) because
the kilo pathPrefix is a $HOME (non-absolute) superset of the hardcoded
default base. Restructure so OpenCode/Kilo skills mirror copyFlattenedCommands
exactly: stage raw commands, apply pathPrefix BEFORE conversion via a new
shared applyOpencodeFamilyPathPrefix() helper (now used by both the command
and skill writers), then convert. This guarantees byte-for-byte command/
skill body parity for global, --local, and --config-dir installs and removes
the prefix-overlap hazard. Drop the fragile _applyRuntimeRewrites opencode/
kilo case. Strengthen the path regression test.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* refactor(#784): derive opencode/kilo skills from the same staged command set

Pass the installer's _stageSkills() output directly to
installOpencodeFamilySkills instead of re-staging via the layout, so the
command/ and skills/ surfaces always cover the identical profile-resolved
set — including the --minimal/--core-only alias path, which stages
differently from a plain --profile=core. Verified: minimal install now
emits 8 commands and 8 skills.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#784): set changeset PR number to 810

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* test(#784): fully escape backslashes in test helper (CodeQL js/incomplete-string-escaping)

Replace the dot-only escape `replace(/[.]/g, '\\.')` with a complete
regex-escape pattern `replace(/[\\.*+?^${}()|[\]]/g, '\\$&')` so all
regex metacharacters (including backslash itself) in `defaultBase` are
safely escaped before interpolation into `new RegExp(...)`.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#813): apply per-runtime skill path rewrites in applySurface (#817)

* fix(#813): apply per-runtime skill path rewrites in applySurface

applySurface() re-staged skill artifacts but, unlike installRuntimeArtifacts(),
never applied the per-runtime path rewrites. So /gsd:surface
(profile/enable/disable/reset) overwrote installed SKILL.md bodies with the
converter's default ~/.claude paths instead of the install target (pathPrefix),
silently regressing skill path references for every skillsKind runtime until
the next reinstall.

applySurface now mirrors installRuntimeArtifacts: for kind.kind === 'skills' it
derives pathPrefix the same way and applies applyRuntimeContentRewritesInPlace
on the staged dir before syncing.

- bin/install.js: export applyRuntimeContentRewritesInPlace
- runtime-artifact-layout.cts: carry resolved scope on Layout; export
  getInstallExports; type computePathPrefix/applyRuntimeContentRewritesInPlace
  on InstallExports
- surface.cts: lazily derive pathPrefix (only when a skills kind exists) and
  apply the rewrite via the shared getInstallExports accessor — single source of
  truth with install, only skills kinds rewritten (matches install)
- tests: regression test parameterized over cursor + codex asserting
  post-applySurface bodies carry the install pathPrefix, not ~/.claude
- CONTEXT.md: glossary updated for the applySurface rewrite parity + scope seam

Closes #813

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#813): add changeset fragment for PR #817

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* test(#813): normalize configDir prefix to forward slashes for Windows CI

The #813 regression assertion compared skill bodies against a raw
${configDir}/ prefix, but production derives pathPrefix via
path.resolve(configDir).replace(/\\/g, '/'). On Windows, mkdtempSync
returns backslash paths while the rewritten body uses forward slashes,
so the assertion would fail Windows-only (not covered by local gsd-test).
Normalize the expected prefix the same way production does.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#816): mirror install command-prefix handling in _syncGsdDir (#822)

* fix(#816): mirror install command-prefix handling in _syncGsdDir

applySurface() via _syncGsdDir handled command artifacts differently from a
fresh install. For flat command dirs (cursor/augment/opencode/kilo) install's
_copyStaged adds kind.prefix (gsd-<stem>.md) and _removeGsdEntries prunes
prefix-scoped, but _syncGsdDir copied staged files verbatim (unprefixed) and
pruned by exact name. So every /gsd:surface toggle wrote wrong filenames,
orphaned the installed gsd-*.md, and deleted user-authored command files.

_syncGsdDir's commands/agents branch now mirrors install:
- flat command dirs get the gsd- prefix on copy; namespaced dirs (commands/gsd)
  and agents keep staged names, using install's namespacedByDir rule
- prune is prefix-scoped so user files in shared flat dirs are preserved;
  namespaced commands/gsd stays membership-pruned so superseded commands are
  still removed on profile shrink

The naming rule is intentionally re-implemented (not via require('bin/install.js')
to avoid its module-load banner side-effect); a strict parity test asserts
applySurface and installRuntimeArtifacts produce identical command filenames for
opencode/kilo/cursor/augment/gemini, guarding against drift.

Closes #816

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#816): add changeset fragment for PR #822

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#771): convert agent color: hex/magenta values to documented named colors (#823)

* chore(#771): convert agent color: hex/magenta values to documented named colors

Claude Code's sub-agent `color:` field documents only 8 named colors
(red, blue, green, yellow, purple, orange, pink, cyan). Twelve agent
files used hex values and two used the undocumented `magenta`; convert
each to the nearest documented named color so the intended per-agent
TUI color differentiation is spec-compliant.

- agents/*.md: 14 color values hex/magenta -> nearest named color
- scripts/research-profiles.cjs: update the 3 generated research-agent
  profiles (source of truth) so gen-research-agents stays in sync
- docs/AGENTS.md: update documented colors; add missing Color rows for
  gsd-nyquist-auditor, gsd-project-researcher, gsd-phase-researcher
- tests/agent-frontmatter.test.cjs: add regression guard asserting every
  agent color: is in the documented named-color set

Closes #771

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#771): add changeset

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* feat(#773): add --ephemeral and --dangerously-bypass-hook-trust to automated codex exec wrappers (#824)

* feat(#773): add --ephemeral and --dangerously-bypass-hook-trust to automated codex exec invocations

Automated codex exec calls in the review workflow now carry --ephemeral
(no session-state accumulation across CI runs) and
--dangerously-bypass-hook-trust (skip hook-trust prompts for hooks
whose provenance gsd-core already controls). Both flags were verified
present in the installed codex CLI (codex exec --help).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#773): correct changeset pr: reference to #824

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* feat(#775): ship a gemini-extension.json extension package (#818)

Add a Gemini CLI extension package so users can install, update, and
remove GSD through Gemini's own extension lifecycle and have it appear in
`gemini extensions list`:

  gemini extensions install https://github.com/open-gsd/gsd-core
  gemini extensions update gsd-core
  gemini extensions uninstall gsd-core
  gemini extensions link /path/to/gsd-core   # dev

This mirrors the additive Claude Code plugin manifest (#766): a thin,
version-stamped manifest enforced by an in-repo drift test. The extension
ships the context-file payload (GEMINI.md), loaded into every Gemini
session; slash-command/agent/hook TOML projection into the extension is a
documented follow-up. The manual `npx gsd-core --gemini` installer (which
provides the /gsd:* commands) is unchanged — purely additive, no breaking
change.

- gemini-extension.json: name=binName, version tracks package.json,
  description, contextFileName=GEMINI.md (minimal; no mcpServers — gsd
  ships no MCP server)
- GEMINI.md: Gemini-session context payload
- package.json: add both artifacts to files[] so they publish
- CONTEXT.md: add "Gemini Extension Package" glossary entry
- docs: USER-GUIDE + install-on-your-runtime how-to
- tests/issue-775-gemini-extension.test.cjs: manifest validity, version
  parity with package.json, contextFileName existence, files[] publication

Closes #775

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* feat(#768): pre-populate settings.json permissions.allow/deny for Claude Code (#819)

* feat(#768): pre-populate settings.json permissions.allow/deny for Claude Code

Adds mergeClaudePermissions() to bin/install.js which non-destructively
appends GSD's known-safe tool-call patterns to permissions.allow and
defense-in-depth credential-file patterns to permissions.deny during
Claude Code installs. Merge is idempotent (no duplicates on reinstall)
and additive (existing user entries preserved). Uninstall removes only
the exact GSD-owned entries.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore: update changeset pr number to 819

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* feat(#774): emit service_tier/model_verbosity in Codex agent TOML + agents/openai.yaml skill chip (#828)

* feat(#774): emit service_tier/model_verbosity in Codex agent TOML + agents/openai.yaml skill chip

- Add service_tier = "flex" and model_verbosity = "low" to the Codex
  ConfigProfile TOML for light-tier agents (gsd-research-synthesizer,
  gsd-codebase-mapper, gsd-plan-checker, and 8 others identified via
  AGENT_DEFAULT_TIERS). Field names/values verified against Codex schema
  (profile_toml.rs / config_types.rs Verbosity enum). Non-light agents
  are unaffected.

- Add generateCodexSkillMetadataYaml() and writeCodexSkillMetadataFiles():
  after installRuntimeArtifacts, iterate every gsd-* skill directory,
  read the short-description already emitted in the SKILL.md frontmatter
  by convertClaudeCommandToCodexSkill, and write agents/openai.yaml with
  interface.display_name and interface.short_description for the Codex
  TUI skill picker chip.
  - yamlQuote (JSON.stringify) handles all YAML-unsafe chars.
  - User-owned gsd-dev-preferences dir is never overwritten.
  - Errors per-skill are swallowed so a bad SKILL.md can't abort install.
  - agents/openai.yaml is covered by the snapshot/rollback system and
    manifest hash (writeManifest hashes skill dirs recursively).
  - Uninstall symmetry: _removeGsdEntries removes whole gsd-* dirs.

- 21 new tests in codex-config.test.cjs covering service_tier/verbosity
  TOML emission, YAML generation (round-trip via js-yaml), and
  writeCodexSkillMetadataFiles including an e2e integration test.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#774): correct docs-lint coverage — proper changeset format + USER-GUIDE entry

Rewrite the changeset fragment from old @opengsd/gsd-core:patch format to the
required type:/pr: schema so the docs-lint parser can consume it.  Add a new
"Codex skill picker and agent scheduling (#774)" section to docs/USER-GUIDE.md
describing the flex-tier scheduling and /skills TUI chip enrichments — both are
user-visible and belong in docs rather than behind a docs-exempt marker.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* feat(#769): adopt context:fork + effort on heavy workflow skills (#820)

* feat(#769): emit context:fork + effort: frontmatter on heavy workflow skills

Add `context: fork` and `effort: xhigh` to the three heaviest workflow
commands (plan-phase, execute-phase, autonomous) and `effort: low` to the
two quick-status commands (progress, stats).

On Claude Code, `context: fork` runs the skill in an isolated subagent
context window so the main session's context budget is protected.
`effort: xhigh` / `effort: low` signal the appropriate token-budget tier to
the runtime. Both fields are silently ignored by runtimes that do not
recognise them (Gemini, Codex, Cursor, etc.) — no behaviour change outside
Claude Code.

Update convertClaudeCommandToClaudeSkill in bin/install.js to preserve
`context:` and `effort:` when rewriting source command files to SKILL.md for
a Claude global install. Add install-suite tests to assert the fields are
present in both source commands and the installed SKILL.md output.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* test(#769): tighten regex assertions + add execute/plan-phase effort coverage

Fix low-severity adversarial finding: tighten test regex patterns from
`\s*` to `[ \t]*` so they cannot match across newlines (CRLF parity).
Add missing effort: xhigh assertions for gsd-execute-phase and gsd-plan-phase
SKILL.md install output to complete the black-box coverage gap.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* feat(#772): adopt stable Codex hook events + commandWindows for Windows parity (#827)

* feat(#772): adopt stable Codex hook events + commandWindows for Windows parity

Register three new stable Codex hook events (SubagentStart, Stop,
PostToolUse) wired to gsd-context-monitor.js so Codex installs get
the same context-headroom tracking at subagent and session boundaries
that Claude/Qwen already have.

Add commandWindows field to the SessionStart hook entry on Windows so
Codex uses the .cmd shim directly (Git Bash/MSYS cannot POSIX-exec
node.exe). commandWindows is only emitted on win32; POSIX is unchanged.

Refactor reconcileCodexHooksJsonSessionStart into a generic
reconcileCodexHooksJsonEvent so any event name can be reconciled with
the same dedup/preserve-user-entries logic.

Add gsd-context-monitor.js and .cmd to MANAGED_HOOK_COMMAND_BASENAMES
_BY_SURFACE so idempotent re-runs de-duplicate entries correctly.

30 new tests covering: export surface, event registration for each of
the three events, commandWindows parity (POSIX vs win32), idempotency,
uninstall, and user-entry preservation.

Closes #772

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#772): windows path normalization + docs-lint

- Normalize scriptPath backslashes to forward slashes in
  ensureCodexHooksJsonEvent and ensureCodexHooksJsonSessionStart so that
  isManagedHookCommand can match stored commands against configDir on
  Windows CI runners. path.resolve returns backslash paths on Windows,
  but when platform is not 'win32' (e.g. platform:'linux' in tests),
  projectManagedHookCommand skips normalization — producing a mismatch
  that breaks idempotency deduplication (the same hook entry appended
  twice on re-register). Forward-slash paths are always valid in both
  Node.js and Codex, so the normalization is safe for all platforms.
- Fix changeset pr: 0 → 827 to resolve fail_malformed_fragment.
- Add Codex hook coverage table to docs/how-to/install-on-your-runtime.md
  documenting the SubagentStart/Stop/PostToolUse events + commandWindows
  Windows-parity field added by this enhancement.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* feat(#778): cross-runtime command enrichment (Gemini {{args}}/!{}, Qwen priority) (#825)

* feat(#778): cross-runtime command enrichment (Gemini {{args}}/!{}, Qwen priority)

Enrich the installer's per-runtime command/skill generators with native,
verified, additive fields:

- Gemini CLI: map Claude's $ARGUMENTS -> Gemini's {{args}} in generated TOML
  commands so typed arguments interpolate; inject live .planning/STATE.md into
  /gsd:progress via a fixed, injection-safe !{cat .planning/STATE.md 2>/dev/null}
  shell block (no interpolated input).
- Qwen Code: emit the optional numeric `priority` field on main-loop skills so
  the most-used workflows sort first in the /skills list (higher = earlier per
  the Qwen skills spec; the issue's inverse numbering was corrected).

OpenCode per-command model/agent/subtask/variant enrichment was evaluated and
intentionally not implemented: `model` reintroduces the #1156
ProviderModelNotFoundError regression for non-Anthropic providers (the converter
deliberately strips model:), `subtask`/`agent` change execution semantics for
GSD's interactive commands, and `variant` is not in the OpenCode command schema.

Schemas verified against primary docs (Gemini custom-commands, Qwen skills,
OpenCode commands/skills). Adds tests/enh-778-* and how-to + USER-GUIDE docs.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#778): set changeset PR number to 825

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* feat(#789): elevate CodeBuddy — slash commands (#830)

* feat(#789): elevate CodeBuddy — emit slash commands (+ document subagent/MCP scope)

Emit a CodeBuddy slash-command surface so GSD workflows appear in the
'/' menu, reaching parity with other elevated runtimes.

- Add convertClaudeCommandToCodebuddyCommand and register a commands/
  artifact kind for the codebuddy runtime (commands/gsd-<name>.md),
  consistent with the Cursor (#785) and Augment (#790) commands surfaces.
- Mark emitted skills user-invocable:false so the commands surface is the
  sole '/' entry point (no duplicate /gsd-* entries); skills stay
  model-invocable. CodeBuddy's SKILL.md supports this field.
- Normalize $HOME/.codebuddy (bare + slash) path forms in runtime
  rewrites so --config-dir/local installs don't leak the default home.
- Report installed commands/ count on install; uninstall prunes gsd-*
  commands while preserving user-owned commands.

Scope: subagents (~/.codebuddy/agents/) are already emitted by the
generic agents block (unchanged); no mcp.json is written (gsd ships no
MCP server, and CodeBuddy's mcp.json registers only external servers).

Closes #789

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#789): set changeset pr number to 830

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* feat(#776): Gemini hook events (BeforeAgent/AfterAgent/BeforeModel) + hooksConfig.enabled check (#829)

* feat(#776): Gemini hook events (BeforeAgent/AfterAgent/BeforeModel) + hooksConfig.enabled check

Register three new Gemini-CLI hook events on install:
  - BeforeAgent: fires before agent planning; wired to gsd-context-monitor
  - AfterAgent: fires after final response generation; wired to gsd-context-monitor
  - BeforeModel: fires before each LLM call (per-turn); wired to gsd-context-monitor

All three reuse gsd-context-monitor.js (no new hook files). Uninstall cleanup
loop extended to remove the new events. Non-array guard added for robustness
against malformed settings.

Also detect hooksConfig.enabled:false in Gemini settings and emit a clear
warning — without this check, all registered hooks silently do nothing.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore: update changeset pr: 829

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* docs(#776): document Gemini hook events

Add hook coverage table to the Gemini CLI section of install-on-your-runtime.md,
covering the three new events (BeforeAgent/AfterAgent/BeforeModel wired to
gsd-context-monitor) plus a callout for the hooksConfig.enabled:false silent
failure mode detected by the installer.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* feat(#777): register Cursor-native hooks (.cursor/hooks.json) for session-start/post-tool parity (#831)

* feat(#777): register Cursor-native hooks (.cursor/hooks.json) for session-start/post-tool parity

- Add gsd-cursor-session-start.js: injects STATE.md presence reminder (or
  new-project nudge) into Cursor sessions via the sessionStart hook event
- Add gsd-cursor-post-tool.js: emits an additional_context nudge when
  write-class tool calls touch .planning/ files (postToolUse hook event)
- Add 'cursor-hooks-json' installSurface to runtime-config-adapter-registry;
  writeCursorHooksJson/reconcileCursorHooksJson write the canonical
  { version: 1, hooks: { sessionStart, postToolUse } } JSON shape with
  idempotent reconciliation that preserves user-owned hook entries
- Hook scripts are copied with /gsd:→gsd- rewrite so installed files
  contain no colon-form slash-command refs (bug-376 invariant)
- 20 new tests in tests/cursor-hooks.test.cjs cover all reconciler paths,
  entry helpers, removal, runtime adapter surface, and hook script behavior
- Update CONTEXT.md, ARCHITECTURE.md, installer-migrations.md, and
  000-first-time-baseline.cts to include Cursor hooks.json surface

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#777): build hooks/dist on demand in bug-376 test for scoped/windows CI

hooks/dist is gitignored and only produced by `npm run build:hooks`.
The CI scoped (ubuntu-latest/node-22) and windows (windows-latest/node-24)
test jobs do NOT run build:hooks before executing tests, so bug-376's
prerequisite suite was failing with "hooks/dist not found" on both legs.

Add ensureHooksDist() helper (mirrors bug-3357 pattern) that builds
hooks/dist on demand in the before() hooks of prerequisite and Suite 3.
Also add ensureHooksDist() call to Suite 3's before() so the snapshot
step is also hermetic.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* docs(#832): add how-to guide for minimal install / skill profiles (#835)

Add docs/how-to/install-minimal-and-add-skills.md covering the --minimal
/ --core-only / --profile=core install, the core/standard/full profiles,
and growing the surface live via /gsd:surface or on reinstall. Register
it in the docs/README.md How-to guides index.

Closes #832

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* feat(#815): add /gsd-update --next to install the @next RC channel (#839)

Adds an opt-in --next (alias --rc) flag to /gsd-update targeting the @next RC dist-tag (ADR #660), with a {latest,next} allowlist enforced at three layers, channel-aware version check + banner, and byte-for-byte unchanged default @latest behavior.

Closes #815

* fix(#837): three-dot diff in ci-test-scope so docs-only PRs skip the heavy matrix (#841)

CI test-scope detection diffed changed files with a two-dot
`git diff --name-only base head`, where base is the moving tip of `next`.
A PR branch cut from a slightly older `next` surfaced every product file
`next` had gained since the merge-base, flipping product_changed/full_matrix
and running the full Windows/macOS matrix + coverage on docs-only PRs.

Switch to a three-dot `git diff --name-only base...head` (vs the merge-base),
matching GitHub's PR "Files changed" semantics. Add a regression test that
builds a stale-base topology, plus a guard test pinning `fetch-depth: 0` on
the `changes` job (required for the merge-base to be locally available).

Closes #837

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* feat(#836): no-LLM duplicate-issue detection + challenge + 1-day auto-close (#843)

* feat(#836): no-LLM duplicate-issue detection + challenge + 1-day auto-close

Adds a deterministic (no-LLM) duplicate-issue governance lifecycle:

- scripts/issue-dedupe.cjs: pure, unit-tested module (tokenize, Sørensen–Dice
  title similarity, scoreCandidates, renderChallengeComment, shouldClose) with
  fail-safe destructive-action guards.
- duplicate-check.yml (issues:opened): scores new-issue title against open
  issues, posts a challenge comment + applies the pending `possible-duplicate`
  label on a clear match.
- duplicate-sweep.yml (daily cron): closes possible-duplicate issues whose
  challenge comment is >24h old with no human reply and no 👎 veto; honors
  exempt labels; re-checks the label immediately before close (TOCTOU guard);
  strips the label on close to avoid reopen loops.
- remove-duplicate-label.yml (issue_comment:created): clears the label and
  applies needs-maintainer-review when any human responds.
- bug_report.yml / docs_issue.yml: add the required "I searched existing
  issues" preflight checkbox so all five forms force a pre-search attestation.
- docs/agents/triage-labels.md: document the label + lifecycle.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore(#836): add changeset fragment for duplicate-issue detection

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* feat(#770): register Claude Code lifecycle hooks (SubagentStop/Stop/PreCompact/FileChanged) (#821)

* feat(#770): register Claude Code lifecycle hooks (SubagentStop/Stop/PreCompact/FileChanged)

Wire three new context-tracking events (SubagentStop, Stop, PreCompact) to
gsd-context-monitor so context-headroom warnings surface at model-stop and
subagent-finalisation moments — not just on PostToolUse.  Add a new
FileChanged hook (gsd-config-reload.js) that hot-reloads .planning/config.json
context mid-session when the user edits it, injecting a config summary as
hookSpecificOutput.additionalContext.  Updates plugin manifest hooks.json,
managed-hooks-registry, installer-migration-report allowlist, and
shell-command-projection cleanup tables.  Tests: 21 new assertions in
enh-770-claude-hook-events.test.cjs; enh-788 and issue-766 test suites updated.

Closes #770

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* docs(#770): document newly-registered Claude Code lifecycle hooks

Add a Hook coverage table to the Claude Code npm installer section of
docs/how-to/install-on-your-runtime.md describing SubagentStop, Stop,
PreCompact, and the new FileChanged (gsd-config-reload.js) hook that
hot-reloads .planning/config.json mid-session. Also fixes the changeset
frontmatter (adds type: Added + pr: 821) so docs-lint can consume the
fragment.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#770): add gsd-config-reload.js to INVENTORY.md and regenerate manifest

The feat commit added hooks/gsd-config-reload.js but did not bump the
Hooks count in docs/INVENTORY.md (14→15) or add the new row, and did not
regenerate docs/INVENTORY-MANIFEST.json. Both inventory-counts and
inventory-manifest-sync tests failed across the full CI matrix.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#770): make lifecycle-hook tests deterministic on scoped runner

Replace the shared hooks/dist/ ensemble setup (ensureHooksDist /
teardownHooksDist) in the Claude hook tests with per-test isolation:
pre-populate each test's own tmpDir/.claude/hooks/ with stub files and
pass installerMigrations:[] to install() so the first-time-baseline
migration does not remove the stubs before the copy step can run.

Root cause: hooks/dist/ is gitignored and absent on a fresh npm ci.
ensureHooksDist() created it and teardownHooksDist() deleted it, but
with --test-concurrency=4 both test files ran concurrently as separate
Node.js worker processes sharing the same filesystem.  One file's
afterEach teardown deleted hooks/dist/ while the other file's install()
was copying from it, producing an ENOENT (reproduced 2/10 runs locally).

The additional issue: even with pre-placed stubs surviving the copy race,
the 000-first-time-baseline migration classified hooks/gsd-*.js as
bundled-gsd-hook artifacts, auto-removed them, and the copy step never
re-ran (hooks/dist/ absent) — leaving contextMonitorFile missing and all
hook registrations silently skipped (the 'got: []' symptom).

Fix: pre-populate targetDir/hooks/ per-test (isolated temp dir) AND pass
installerMigrations:[] so the baseline scan is skipped.  The Qwen suites
already used this pattern correctly; the Claude suites are aligned to it.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#770): ship gsd-config-reload.js by adding it to build-hooks HOOKS_TO_COPY

The #770 feature added hooks/gsd-config-reload.js and registered it in
MANAGED_HOOKS, the installer, INVENTORY, and the test EXPECTED_ALL_HOOKS
list — but never added it to scripts/build-hooks.js HOOKS_TO_COPY. As a
result the hook was never copied into hooks/dist/ during the build, so:

  - the hook would never ship to users (real production bug — the
    FileChanged config-reload feature was dead-on-arrival), and
  - install-minimal-hooks.test.cjs #1755 ("all expected hooks are copied
    from hooks/dist/ to target", ".js hooks are executable after copy",
    "manifest contains .js hook entries") failed on any environment with
    a clean checkout (no pre-existing hooks/dist/): coverage, full test
    macos-22/macos-24, test ubuntu-24.

The failures were masked locally only by a stale hooks/dist/ left from a
prior build (build-hooks copies into dist without clearing it). On CI's
fresh `npm ci` there is no dist, so the omission surfaced.

Fix: add 'gsd-config-reload.js' to HOOKS_TO_COPY so build-hooks stages it
into hooks/dist/ alongside the other JS hooks. Verified by removing
hooks/dist/ and rerunning the full suite green (0 fail).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#770): make config prototype-pollution beforeEach deterministic on scoped runner

Root cause: the #663 and alert-#26 prototype-pollution describe blocks
seeded .planning/config.json in beforeEach via a bare
runGsdTools('config-ensure-section') whose result was discarded. That
command runs in a spawned gsd-tools child; on the scoped CI lane
(--test-concurrency=4, config.test.cjs scheduled alongside the heavy
install/tarball suites that #770 pulled into the targeted set) the child
can be transiently killed under resource pressure (non-zero exit, empty
stderr — an OS-level kill, not an app error). The swallowed failure left
config.json absent, so the first subtest's readConfig() threw ENOENT
opening <tmp>/.planning/config.json. Only 1 of 4 subtests failed,
confirming a per-invocation transient, not a deterministic miss; the full
suite schedules files differently so config.test.cjs did not collide with
those heavy neighbors → passed there.

Fix: add ensureConfigReady(tmpDir) which retries config-ensure-section on
ANY failure or missing file and throws a clear diagnostic if it still
cannot create config.json, then use it in both prototype-pollution
beforeEach blocks. Setup is now deterministic under load; the #663/alert-#26
security assertions are unchanged.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* fix(#844): sync runtime manifest versions on npm version bump (#845)

* fix(#844): sync runtime manifest versions on npm version bump

The release workflow bumps package.json via `npm version` but never
stamped the runtime-integration manifests that must track it
(.claude-plugin/plugin.json #766, gemini-extension.json #775), so the
first RC/finalize whose version diverged from the -dev stream failed the
test suite before tagging/publishing.

Add scripts/sync-manifest-versions.cjs (single VERSIONED_MANIFESTS
registry) wired to a `version` npm lifecycle hook that stamps + stages
the manifests on every `npm version` — covering all four release bump
sites and local bumps with no workflow edits. A regression guard test
fails if any repo JSON whose version matches package.json is not
registered, forcing future version-bearing manifests into the sync.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* docs(#844): add changeset for manifest version sync fix

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* chore: bump to 1.4.0-rc.2

* chore: finalize v1.4.0

* chore: promote CHANGELOG for v1.4.0

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
Co-authored-by: Colin <colin@solvely.net>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Joe <44273333+jslitzkerttcu@users.noreply.github.com>
Co-authored-by: Solvely-Colin <211764741+Solvely-Colin@users.noreply.github.com>
2026-06-08 14:37:33 -04:00

54 KiB
Raw Blame History

GSD Shipped Surface Inventory

Authoritative roster of every shipped GSD surface: commands, agents, workflows, references, CLI modules, and hooks. Where the broad docs (AGENTS.md, COMMANDS.md, ARCHITECTURE.md, CLI-TOOLS.md) diverge from the filesystem, treat this file and the repository tree itself as the source of truth.

How To Use This File

  • Counts here are derived from the filesystem at the v1.36.0 pin and may drift between releases. For live counts, run ls commands/gsd/*.md | wc -l, ls agents/gsd-*.md | wc -l, etc. against the checkout.
  • This file enumerates every shipped surface across all six families (agents, commands, workflows, references, CLI modules, hooks). Broad docs may render narrative or curated subsets; when they disagree with the filesystem, this file and the directory listings are authoritative.
  • New surfaces added after v1.36.0 should land here first, then propagate to the broad docs. The drift-control tests in tests/inventory-counts.test.cjs, tests/commands-doc-parity.test.cjs, tests/agents-doc-parity.test.cjs, tests/cli-modules-doc-parity.test.cjs, tests/hooks-doc-parity.test.cjs, tests/architecture-counts.test.cjs, and tests/command-count-sync.test.cjs anchor the counts and roster contents against the filesystem.

This is the authoritative roster of every shipped GSD Core surface. See the docs index to navigate by topic.


Agents (33 shipped)

Full roster at agents/gsd-*.md. The "Primary doc" column flags whether docs/AGENTS.md carries a full role card (primary), a short stub in the "Advanced and Specialized Agents" section (advanced stub), or no coverage (inventory only).

Agent Role (one line) Spawned by Primary doc
gsd-project-researcher Researches domain ecosystem before roadmap creation (stack, features, architecture, pitfalls). /gsd-new-project, /gsd-new-milestone primary
gsd-phase-researcher Researches implementation approach for a specific phase before planning. /gsd-plan-phase primary
gsd-ui-researcher Produces UI design contracts for frontend phases. /gsd-ui-phase primary
gsd-assumptions-analyzer Produces evidence-backed assumptions for discuss-phase (assumptions mode). discuss-phase-assumptions workflow primary
gsd-advisor-researcher Researches a single gray-area decision during discuss-phase advisor mode. discuss-phase workflow (advisor mode) primary
gsd-research-synthesizer Combines parallel researcher outputs into a unified SUMMARY.md. /gsd-new-project primary
gsd-planner Creates executable phase plans with task breakdown and goal-backward verification. /gsd-plan-phase, /gsd-quick primary
gsd-roadmapper Creates project roadmaps with phase breakdown and requirement mapping. /gsd-new-project primary
gsd-executor Executes GSD plans with atomic commits and deviation handling. /gsd-execute-phase, /gsd-quick primary
gsd-plan-checker Verifies plans will achieve phase goals (8 verification dimensions). /gsd-plan-phase (verification loop) primary
gsd-integration-checker Verifies cross-phase integration and end-to-end flows. /gsd-audit-milestone primary
gsd-ui-checker Validates UI-SPEC.md design contracts against quality dimensions. /gsd-ui-phase (validation loop) primary
gsd-verifier Verifies phase goal achievement through goal-backward analysis. /gsd-execute-phase primary
gsd-nyquist-auditor Fills Nyquist validation gaps by generating tests. /gsd-validate-phase primary
gsd-ui-auditor Retroactive 6-pillar visual audit of implemented frontend code. /gsd-ui-review primary
gsd-codebase-mapper Explores codebase and writes structured analysis documents. /gsd-map-codebase primary
gsd-debugger Investigates bugs using scientific method with persistent state. /gsd-debug, /gsd-verify-work primary
gsd-user-profiler Scores developer behavior across 8 dimensions. /gsd-profile-user primary
gsd-doc-writer Writes and updates project documentation. /gsd-docs-update primary
gsd-doc-verifier Verifies factual claims in generated documentation. /gsd-docs-update primary
gsd-security-auditor Verifies threat mitigations from PLAN.md threat model. /gsd-secure-phase primary
gsd-pattern-mapper Maps new files to closest existing analogs; writes PATTERNS.md for the planner. /gsd-plan-phase (between research and planning) advanced stub
gsd-debug-session-manager Runs the full /gsd-debug checkpoint-and-continuation loop in isolated context so main stays lean. /gsd-debug advanced stub
gsd-code-reviewer Reviews source files for bugs, security issues, and code-quality problems; produces REVIEW.md. /gsd-code-review advanced stub
gsd-code-fixer Applies fixes to REVIEW.md findings with atomic per-fix commits; produces REVIEW-FIX.md. /gsd-code-review --fix advanced stub
gsd-ai-researcher Researches a chosen AI framework's official docs into implementation-ready guidance (AI-SPEC.md §3–§4b). /gsd-ai-integration-phase advanced stub
gsd-domain-researcher Surfaces domain-expert evaluation criteria and failure modes for an AI system (AI-SPEC.md §1b). /gsd-ai-integration-phase advanced stub
gsd-eval-planner Designs structured evaluation strategy for an AI phase (AI-SPEC.md §5–§7). /gsd-ai-integration-phase advanced stub
gsd-eval-auditor Retroactive audit of an AI phase's evaluation coverage; produces EVAL-REVIEW.md (COVERED/PARTIAL/MISSING). /gsd-eval-review advanced stub
gsd-framework-selector ≤6-question interactive decision matrix that scores and recommends an AI/LLM framework. /gsd-ai-integration-phase advanced stub
gsd-intel-updater Writes structured intel files (.planning/intel/*.json) used as a queryable codebase knowledge base. /gsd-map-codebase --query advanced stub
gsd-doc-classifier Classifies a single planning document as ADR, PRD, SPEC, DOC, or UNKNOWN; spawned in parallel to process the doc corpus. /gsd-ingest-docs advanced stub
gsd-doc-synthesizer Synthesizes classified planning docs into a single consolidated context with precedence rules, cycle detection, and three-bucket conflicts report. /gsd-ingest-docs advanced stub

Coverage note. docs/AGENTS.md gives full role cards for 21 primary agents plus concise stubs for the 12 advanced agents. The Agent Tool Permissions Summary in that file covers only the primary 21 agents; the advanced agents' tool lists are captured in their per-agent frontmatter in agents/gsd-*.md.


Commands (67 shipped)

Full roster at commands/gsd/*.md. The groupings below mirror docs/COMMANDS.md section order; each row carries the command name, a one-line role derived from the command's frontmatter description:, and a link to the source file. tests/command-count-sync.test.cjs locks the count against the filesystem.

Namespace Meta-Skills

These six routers are descriptor-only entries that the model picks first; the body of each contains a routing table that points at the correct concrete sub-skill. They exist to keep the eager skill-listing token cost low while the full surface remains reachable. See #2792 for the rationale; the routing tables target the post-#2790 consolidated surface.

Command Role Source
/gsd-workflow Phase pipeline router — discuss / plan / execute / verify / phase / progress. commands/gsd/ns-workflow.md
/gsd-project Project lifecycle router — milestones, audits, summary. commands/gsd/ns-project.md
/gsd-quality Quality-gate router — code review, debug, audit, security, eval, ui. commands/gsd/ns-review.md
/gsd-context Codebase-intelligence router — map, graphify, docs, learnings. commands/gsd/ns-context.md
/gsd-manage Management router — config, workspace, workstreams, thread, update, ship, inbox. commands/gsd/ns-manage.md
/gsd-ideate Exploration & capture router — explore, sketch, spike, spec, capture. commands/gsd/ns-ideate.md

Core Workflow

Command Role Source
/gsd-new-project Initialize a new project with deep context gathering and PROJECT.md. commands/gsd/new-project.md
/gsd-workspace Manage GSD workspaces — create (--new), list (--list), or remove (--remove) isolated workspace environments. commands/gsd/workspace.md
/gsd-discuss-phase Gather phase context through adaptive questioning before planning. commands/gsd/discuss-phase.md
/gsd-mvp-phase Plan a phase as a vertical MVP slice — user story, SPIDR splitting, then plan-phase. commands/gsd/mvp-phase.md
/gsd-spec-phase Socratic spec refinement producing a SPEC.md with falsifiable requirements. commands/gsd/spec-phase.md
/gsd-ui-phase Generate UI design contract (UI-SPEC.md) for frontend phases. commands/gsd/ui-phase.md
/gsd-ai-integration-phase Generate AI design contract (AI-SPEC.md) via framework selection, research, and eval planning. commands/gsd/ai-integration-phase.md
/gsd-plan-phase Create detailed phase plan (PLAN.md) with verification loop. commands/gsd/plan-phase.md
/gsd-plan-review-convergence Cross-AI plan convergence loop — replan with review feedback until no HIGH concerns remain (max 3 cycles). commands/gsd/plan-review-convergence.md
/gsd-ultraplan-phase [BETA] Offload plan phase to Claude Code's ultraplan cloud — drafts remotely, review in browser, import back via /gsd-import. Claude Code only. commands/gsd/ultraplan-phase.md
/gsd-spike Rapidly spike an idea with throwaway experiments; use --wrap-up to package findings as a persistent skill. commands/gsd/spike.md
/gsd-sketch Rapidly sketch UI/design ideas using throwaway HTML mockups; use --wrap-up to package findings. commands/gsd/sketch.md
/gsd-execute-phase Execute all plans in a phase with wave-based parallelization. commands/gsd/execute-phase.md
/gsd-verify-work Validate built features through conversational UAT with auto-diagnosis. commands/gsd/verify-work.md
/gsd-ship Create PR, run review, and prepare for merge after verification. commands/gsd/ship.md
/gsd-fast Execute a trivial task inline — no subagents, no planning overhead. commands/gsd/fast.md
/gsd-quick Execute a quick task with GSD guarantees (atomic commits, state tracking) but skip optional agents. commands/gsd/quick.md
/gsd-ui-review Retroactive 6-pillar visual audit of implemented frontend code. commands/gsd/ui-review.md
/gsd-code-review Review source files changed during a phase for bugs, security, and code-quality problems; use --fix to auto-apply findings. commands/gsd/code-review.md
/gsd-eval-review Retroactively audit an executed AI phase's evaluation coverage; produces EVAL-REVIEW.md. commands/gsd/eval-review.md

Phase & Milestone Management

Command Role Source
/gsd-phase CRUD for phases — add (default), insert (--insert), remove (--remove), or edit (--edit) phases in ROADMAP.md. commands/gsd/phase.md
/gsd-add-tests Generate tests for a completed phase based on UAT criteria and implementation. commands/gsd/add-tests.md
/gsd-validate-phase Retroactively audit and fill Nyquist validation gaps for a completed phase. commands/gsd/validate-phase.md
/gsd-secure-phase Retroactively verify threat mitigations for a completed phase. commands/gsd/secure-phase.md
/gsd-audit-milestone Audit milestone completion against original intent before archiving. commands/gsd/audit-milestone.md
/gsd-audit-uat Cross-phase audit of all outstanding UAT and verification items. commands/gsd/audit-uat.md
/gsd-audit-fix Autonomous audit-to-fix pipeline — find issues, classify, fix, test, commit. commands/gsd/audit-fix.md
/gsd-complete-milestone Archive completed milestone and prepare for next version. commands/gsd/complete-milestone.md
/gsd-new-milestone Start a new milestone cycle — update PROJECT.md and route to requirements. commands/gsd/new-milestone.md
/gsd-milestone-summary Generate a comprehensive project summary from milestone artifacts. commands/gsd/milestone-summary.md
/gsd-cleanup Archive accumulated phase directories from completed milestones. commands/gsd/cleanup.md
/gsd-manager Interactive command center for managing multiple phases from one terminal. commands/gsd/manager.md
/gsd-workstreams Manage parallel workstreams — list, create, switch, status, progress, complete, resume. commands/gsd/workstreams.md
/gsd-autonomous Run all remaining phases autonomously — discuss → plan → execute per phase. commands/gsd/autonomous.md
/gsd-undo Safe git revert — roll back phase or plan commits using the phase manifest. commands/gsd/undo.md

Session & Navigation

Command Role Source
/gsd-progress Check project progress, show context, and route to next action; use --next to advance automatically or --do to run a freeform task. commands/gsd/progress.md
/gsd-capture Capture ideas, tasks, notes, and seeds — todo (default), --note, --backlog, --seed, or --list pending todos. commands/gsd/capture.md
/gsd-stats Display project statistics — phases, plans, requirements, git metrics, timeline. commands/gsd/stats.md
/gsd-pause-work Create context handoff when pausing work mid-phase. commands/gsd/pause-work.md
/gsd-resume-work Resume work from previous session with full context restoration. commands/gsd/resume-work.md
/gsd-explore Socratic ideation and idea routing — think through ideas before committing. commands/gsd/explore.md
/gsd-review-backlog Review and promote backlog items to active milestone. commands/gsd/review-backlog.md
/gsd-thread Manage persistent context threads for cross-session work. commands/gsd/thread.md

Codebase Intelligence

Command Role Source
/gsd-map-codebase Analyze codebase with parallel mapper agents; use --fast for lightweight scan or --query for intel queries. commands/gsd/map-codebase.md
/gsd-graphify Build, query, and inspect the project knowledge graph in .planning/graphs/. commands/gsd/graphify.md
/gsd-extract-learnings Extract decisions, lessons, patterns, and surprises from completed phase artifacts. commands/gsd/extract-learnings.md

Review, Debug & Recovery

Command Role Source
/gsd-review Request cross-AI peer review of phase plans from external AI CLIs. commands/gsd/review.md
/gsd-debug Systematic debugging with persistent state across context resets. commands/gsd/debug.md
/gsd-forensics Post-mortem investigation for failed GSD workflows — analyzes git, artifacts, state. commands/gsd/forensics.md
/gsd-health Diagnose planning directory health and optionally repair issues. commands/gsd/health.md
/gsd-import Ingest external plans with conflict detection against project decisions. commands/gsd/import.md
/gsd-inbox Triage and review all open GitHub issues and PRs against project templates. commands/gsd/inbox.md

Docs, Profile & Utilities

Command Role Source
/gsd-docs-update Generate or update project documentation verified against the codebase. commands/gsd/docs-update.md
/gsd-ingest-docs Scan a repo for mixed ADRs/PRDs/SPECs/DOCs and bootstrap or merge the full .planning/ setup with classification, synthesis, and conflicts report. commands/gsd/ingest-docs.md
/gsd-profile-user Generate developer behavioral profile and Claude-discoverable artifacts. commands/gsd/profile-user.md
/gsd-settings Configure GSD workflow toggles and model profile. commands/gsd/settings.md
/gsd-config Configure GSD settings — workflow toggles (default), advanced knobs (--advanced), integrations (--integrations), or model profile (--profile). commands/gsd/config.md
/gsd-pr-branch Create a clean PR branch by filtering out .planning/ commits. commands/gsd/pr-branch.md
/gsd-surface Toggle which skills are surfaced — apply a profile, list, or disable a cluster without reinstall. commands/gsd/surface.md
/gsd-update Update GSD to latest version; use --sync to sync skills across runtimes or --reapply to reapply local patches. commands/gsd/update.md
/gsd-help Show available GSD commands and usage guide. commands/gsd/help.md

Workflows (88 shipped)

Full roster at gsd-core/workflows/*.md. Workflows are thin orchestrators that commands reference internally; most are not read directly by end users. Rows below map each workflow file to its role (derived from the <purpose> block) and, where applicable, to the command that invokes it.

Workflow Role Invoked by
add-backlog.md Add a backlog item to ROADMAP.md using 999.x numbering. /gsd-capture --backlog
add-phase.md Add a new integer phase to the end of the current milestone in the roadmap. /gsd-phase (default)
add-tests.md Generate unit and E2E tests for a completed phase based on its artifacts. /gsd-add-tests
add-todo.md Capture an idea or task that surfaces during a session as a structured todo. /gsd-capture (default)
ai-integration-phase.md Orchestrate framework selection → AI research → domain research → eval planning into AI-SPEC.md. /gsd-ai-integration-phase
analyze-dependencies.md Analyze ROADMAP.md phases for file overlap and semantic dependencies; suggest Depends on edges. /gsd-manager --analyze-deps
audit-fix.md Autonomous audit-to-fix pipeline — run audit, parse, classify, fix, test, commit. /gsd-audit-fix
audit-milestone.md Verify milestone met its definition of done by aggregating phase verifications. /gsd-audit-milestone
audit-uat.md Cross-phase audit of UAT and verification files; produces prioritized outstanding-items list. /gsd-audit-uat
autonomous.md Drive milestone phases autonomously — all remaining, a range, or a single phase. /gsd-autonomous
check-todos.md List pending todos, allow selection, load context, and route to the appropriate action. /gsd-capture --list
cleanup.md Archive accumulated phase directories from completed milestones. /gsd-cleanup
code-review-fix.md Auto-fix issues from REVIEW.md via gsd-code-fixer with per-fix atomic commits. /gsd-code-review --fix
code-review.md Review phase source changes via gsd-code-reviewer; produces REVIEW.md. /gsd-code-review
complete-milestone.md Mark a shipped version as complete — MILESTONES.md entry, PROJECT.md evolution, tag. /gsd-complete-milestone
diagnose-issues.md Orchestrate parallel debug agents to investigate UAT gaps and find root causes. /gsd-verify-work (auto-diagnosis)
discovery-phase.md Execute discovery at the appropriate depth level. /gsd-new-project (discovery path)
discuss-phase-assumptions.md Assumptions-mode discuss — extract implementation decisions via codebase-first analysis. /gsd-discuss-phase (when discuss_mode=assumptions)
discuss-phase-power.md Power-user discuss — pre-generate all questions into a JSON state file + HTML UI. /gsd-discuss-phase --power
discuss-phase.md Extract implementation decisions through iterative gray-area discussion. /gsd-discuss-phase
mvp-phase.md Plan a phase as a vertical MVP slice — user story, SPIDR splitting, then plan-phase. /gsd-mvp-phase
do.md Route freeform text from the user to the best matching GSD command. /gsd-progress --do
docs-update.md Generate, update, and verify canonical and hand-written project documentation. /gsd-docs-update
edit-phase.md Edit any field of an existing phase in ROADMAP.md in place, preserving number and position. /gsd-phase --edit
eval-review.md Retroactive audit of an implemented AI phase's evaluation coverage. /gsd-eval-review
execute-phase.md Execute all plans in a phase using wave-based parallel execution. /gsd-execute-phase
execute-plan.md Execute a phase prompt (PLAN.md) and create the outcome summary (SUMMARY.md). execute-phase.md (per-plan subagent)
explore.md Socratic ideation — guide the developer through probing questions. /gsd-explore
debug.md Systematic debugging — subcommand routing, session creation, delegation to gsd-debug-session-manager. /gsd-debug
extract-learnings.md Extract decisions, lessons, patterns, and surprises from completed phase artifacts. /gsd-extract-learnings
fast.md Execute a trivial task inline without subagent overhead. /gsd-fast
forensics.md Forensics investigation of failed workflows — git, artifacts, and state analysis. /gsd-forensics
graduation.md Cluster recurring LEARNINGS.md items across phases and surface HITL promotion candidates. transition.md (graduation_scan step)
health.md Validate .planning/ directory integrity and report actionable issues. /gsd-health
help.md Display the complete GSD Core command reference. /gsd-help
import.md Ingest external plans with conflict detection against existing project decisions. /gsd-import
inbox.md Triage open GitHub issues and PRs against project contribution templates. /gsd-inbox
ingest-docs.md Scan a repo for mixed planning docs; classify, synthesize, and bootstrap or merge into .planning/ with a conflicts report. /gsd-ingest-docs
insert-phase.md Insert a decimal phase for urgent work discovered mid-milestone. /gsd-phase --insert
list-phase-assumptions.md Surface Claude's assumptions about a phase before planning. /gsd-discuss-phase --assumptions
list-workspaces.md List all GSD workspaces found in ~/gsd-workspaces/ with their status. /gsd-workspace --list
manager.md Interactive milestone command center — dashboard, inline discuss, background plan/execute. /gsd-manager
map-codebase.md Orchestrate parallel codebase mapper agents to produce .planning/codebase/ docs. /gsd-map-codebase
milestone-summary.md Milestone summary synthesis — onboarding and review artifact from milestone artifacts. /gsd-milestone-summary
new-milestone.md Start a new milestone cycle — load project context, gather goals, update PROJECT.md/STATE.md. /gsd-new-milestone
new-project.md Unified new-project flow — questioning, research (optional), requirements, roadmap. /gsd-new-project
new-workspace.md Create an isolated workspace with repo worktrees/clones and an independent .planning/. /gsd-workspace --new
next.md Detect current project state and automatically advance to the next logical step. /gsd-progress --next
node-repair.md Autonomous repair operator for failed task verification; invoked by execute-plan. execute-plan.md (recovery)
note.md Zero-friction idea capture — one Write call, one confirmation line. /gsd-capture --note
pause-work.md Create structured .planning/HANDOFF.json and .continue-here.md handoff files. /gsd-pause-work
plan-phase.md Create executable PLAN.md files with integrated research and verification loop. /gsd-plan-phase, /gsd-quick
plan-review-convergence.md Cross-AI plan convergence loop — replan with review feedback until no HIGH concerns remain. /gsd-plan-review-convergence
plant-seed.md Capture a forward-looking idea as a structured seed file with trigger conditions. /gsd-capture --seed
pr-branch.md Create a clean branch for pull requests by filtering .planning/ commits. /gsd-pr-branch
profile-user.md Orchestrate the full developer profiling flow — consent, session scan, profile generation. /gsd-profile-user
progress.md Progress rendering — project context, position, and next-action routing. /gsd-progress
quick.md Quick-task execution with GSD guarantees (atomic commits, state tracking). /gsd-quick
reapply-patches.md Reapply local modifications after a GSD update. /gsd-update --reapply
remove-phase.md Remove a future phase from the roadmap and renumber subsequent phases. /gsd-phase --remove
remove-workspace.md Remove a GSD workspace and clean up worktrees. /gsd-workspace --remove
resume-project.md Resume work — restore full context from STATE.md, HANDOFF.json, and artifacts. /gsd-resume-work
review.md Cross-AI plan review via external CLIs; produces REVIEWS.md. /gsd-review
scan.md Rapid single-focus codebase scan — lightweight alternative to map-codebase. /gsd-map-codebase --fast
secure-phase.md Retroactive threat-mitigation audit for a completed phase. /gsd-secure-phase
session-report.md Session report — token usage, work summary, outcomes. /gsd-pause-work --report
settings.md Configure GSD workflow toggles and model profile. /gsd-settings, /gsd-config --profile
settings-advanced.md Configure GSD power-user knobs — plan bounce, timeouts, branch templates, cross-AI execution, runtime knobs. /gsd-config --advanced
settings-integrations.md Configure third-party API keys (Brave/Firecrawl/Exa), review.models.<cli> CLI routing, and agent_skills.<agent-type> injection with masked (****<last-4>) display. /gsd-config --integrations
ship.md Create PR, run review, and prepare for merge after verification. /gsd-ship
sketch.md Explore design directions through throwaway HTML mockups with 2-3 variants per sketch. /gsd-sketch
sketch-wrap-up.md Curate sketch findings and package them as a persistent sketch-findings-[project] skill. /gsd-sketch --wrap-up
spec-phase.md Socratic spec refinement with ambiguity scoring; produces SPEC.md. /gsd-spec-phase
spike.md Rapid feasibility validation through focused, throwaway experiments. /gsd-spike
spike-wrap-up.md Curate spike findings and package them as a persistent spike-findings-[project] skill. /gsd-spike --wrap-up
stats.md Project statistics rendering — phases, plans, requirements, git metrics. /gsd-stats
sync-skills.md Cross-runtime GSD skill sync — diff and apply gsd-* skill directories across runtime roots. /gsd-update --sync
transition.md Phase-boundary transition workflow — workstream checks, state advancement. execute-phase.md, /gsd-progress --next
ui-phase.md Generate UI-SPEC.md design contract via gsd-ui-researcher. /gsd-ui-phase
ui-review.md Retroactive 6-pillar visual audit via gsd-ui-auditor. /gsd-ui-review
ultraplan-phase.md [BETA] Offload planning to Claude Code's ultraplan cloud; drafts remotely and imports back via /gsd-import. /gsd-ultraplan-phase
undo.md Safe git revert — phase or plan commits using the phase manifest. /gsd-undo
thread.md Create, list, close, or resume persistent context threads for cross-session work. /gsd-thread
update.md Update GSD to latest version with changelog display. /gsd-update
validate-phase.md Retroactively audit and fill Nyquist validation gaps for a completed phase. /gsd-validate-phase
verify-phase.md Verify phase goal achievement through goal-backward analysis. execute-phase.md (post-execution)
verify-work.md Conversational UAT with auto-diagnosis — produces UAT.md and fix plans. /gsd-verify-work

Note: Some workflows have no direct user-facing command (e.g. execute-plan.md, verify-phase.md, transition.md, node-repair.md, diagnose-issues.md) — they are invoked internally by orchestrator workflows. discovery-phase.md is an alternate entry for /gsd-new-project.


References (67 shipped)

Full roster at gsd-core/references/*.md. References are shared knowledge documents that workflows and agents @-reference. The groupings below match docs/ARCHITECTURE.md — core, workflow, thinking-model clusters, and the modular planner decomposition.

Core References

Reference Role
checkpoints.md Checkpoint type definitions and interaction patterns.
gates.md 4 canonical gate types (Confirm, Quality, Safety, Transition) wired into plan-checker and verifier.
model-profiles.md Per-agent model tier assignments.
model-profile-resolution.md Model resolution algorithm documentation.
verification-patterns.md How to verify different artifact types.
verification-overrides.md Per-artifact verification override rules.
planning-config.md Full config schema and behavior.
git-integration.md Git commit, branching, and history patterns.
git-planning-commit.md Planning directory commit conventions.
questioning.md Dream-extraction philosophy for project initialization.
tdd.md Test-driven development integration patterns.
ui-brand.md Visual output formatting patterns.
common-bug-patterns.md Common bug patterns for code review and verification.
debugger-philosophy.md Evergreen debugging disciplines loaded by gsd-debugger.
mandatory-initial-read.md Shared required-reading boilerplate injected into agent prompts.
project-skills-discovery.md Shared project-skills-discovery boilerplate injected into agent prompts.
research-documentation-lookup.md Shared documentation-lookup protocol (Context7 MCP + guarded CLI fallback) injected into all researcher agents.
research-philosophy.md Shared research philosophy (training-as-hypothesis, honest reporting, investigation-not-confirmation) injected into researcher agents.
research-verification-protocol.md Shared research verification protocol (4 pitfalls + pre-submission checklist) injected into researcher agents.

Workflow References

Reference Role
agent-contracts.md Formal interface between orchestrators and agents.
context-budget.md Context window budget allocation rules.
continuation-format.md Session continuation/resume format.
domain-probes.md Domain-specific probing questions for discuss-phase.
gate-prompts.md Gate/checkpoint prompt templates.
scout-codebase.md Phase-type→codebase-map selection table for discuss-phase scout step (extracted via #2551).
revision-loop.md Plan revision iteration patterns.
universal-anti-patterns.md Universal anti-patterns to detect and avoid.
worktree-branch-check.md Canonical spawn-time worktree HEAD/base guard (worktree_branch_check): verify-only and fail-closed — per-agent-branch assertion, protected-ref refusal (#2924), and an exact-base assertion that halts with exit 42 on mismatch so the orchestrator (worktree lifecycle owner) performs recovery (#48). Embedded into worktree sub-agent prompts at dispatch.
worktree-path-safety.md Worktree guard suite: HEAD assertion, cwd-drift sentinel (step 0a, #3097), and absolute-path guard (step 0b, #3099) — loaded into executor spawn prompts via <execution_context>.
artifact-types.md Planning artifact type definitions.
phase-argument-parsing.md Phase argument parsing conventions.
decimal-phase-calculation.md Decimal sub-phase numbering rules.
workstream-flag.md Workstream active-pointer conventions (--ws).
user-profiling.md User behavioral profiling detection heuristics.
thinking-partner.md Conditional thinking-partner activation at decision points.
autonomous-smart-discuss.md Smart-discuss logic for autonomous mode.
ios-scaffold.md iOS application scaffolding patterns.
ai-evals.md AI evaluation design reference for /gsd-ai-integration-phase.
ai-frameworks.md AI framework decision-matrix reference for gsd-framework-selector.
executor-examples.md Worked examples for the gsd-executor agent.
doc-conflict-engine.md Shared conflict-detection contract for ingest/import workflows.
execute-mvp-tdd.md Runtime gate semantics for execute-phase under MVP+TDD — pre-task failing-test verification, end-of-phase blocking review.
mvp-concepts.md Cross-reference index for the six MVP-related reference files; maps each file to its purpose and which workflow loads it.
verify-mvp-mode.md UAT framing rules for MVP-mode phases — user-flow-first ordering, deferred technical checks, user-story-format guard.

Sketch References

References consumed by the /gsd-sketch workflow and its wrap-up companion.

Reference Role
sketch-interactivity.md Rules for making HTML sketches feel interactive and alive.
sketch-theme-system.md Shared CSS theme variable system for cross-sketch consistency.
sketch-tooling.md Floating toolbar utilities included in every sketch.
sketch-variant-patterns.md Multi-variant HTML patterns (tabs, side-by-side, overlays).

Thinking-Model References

References for integrating thinking-class models (o3, o4-mini, Gemini 2.5 Pro) into GSD workflows.

Reference Role
thinking-models-debug.md Thinking-model patterns for debug workflows.
thinking-models-execution.md Thinking-model patterns for execution agents.
thinking-models-planning.md Thinking-model patterns for planning agents.
thinking-models-research.md Thinking-model patterns for research agents.
thinking-models-verification.md Thinking-model patterns for verification agents.

Modular Planner Decomposition

The gsd-planner agent is decomposed into a core agent plus reference modules to fit runtime character limits.

Reference Role
planner-antipatterns.md Planner anti-patterns and specificity examples.
planner-chunked.md Chunked mode return formats (## OUTLINE COMPLETE, ## PLAN COMPLETE) for Windows stdio hang mitigation.
planner-gap-closure.md Gap-closure mode behavior (reads VERIFICATION.md, targeted replanning).
planner-reviews.md Cross-AI review integration (reads REVIEWS.md from /gsd-review).
planner-revision.md Plan revision patterns for iterative refinement.
planner-source-audit.md Planner source-audit and authority-limit rules.
planner-mvp-mode.md Vertical-slice planning rules for MVP mode.
planner-human-verify-mode.md Rules for workflow.human_verify_mode = end-of-phase: suppress checkpoint:human-verify task emission and route deferred items via <verify><human-check>.
planner-graphify-auto-update.md How load_graph_context surfaces .last-build-status.json auto-update state (running / failed / stale head) alongside the existing staleness annotation. Opt-in via graphify.auto_update (#3347).
planner-interface-context.md Interface context rules for executors — how to extract key interfaces/types/exports from existing code and document new interfaces that downstream plans will consume.
planner-load-graph-context.md Planner's load_graph_context step: knowledge-graph freshness + dependency-context query via the gsd_run launcher (extracted from gsd-planner.md).
skeleton-template.md SKELETON.md template emitted for new-project Walking Skeleton (Phase 1 + --mvp).
user-story-template.md User story format for MVP planning — "As a / I want to / So that" structured fields.
spidr-splitting.md SPIDR splitting decomposition rules for handling large user stories in MVP mode.

Subdirectory: gsd-core/references/few-shot-examples/ contains additional few-shot examples (plan-checker.md, verifier.md) that are referenced from specific agents. These are not counted in the 64 top-level references.


CLI Modules (90 shipped)

Full listing: gsd-core/bin/lib/*.cjs.

Module Responsibility
active-workstream-store.cjs Workstream source precedence and selection (CLI --ws > GSD_WORKSTREAM env > stored pointer); name validation and environment propagation
adr-parser.cjs ADR decision parser for plan-phase ingest express path; normalizes section synonyms, parses status/decision/scope fences, and enforces status rejection gates
agent-command-router.cjs Thin CJS subcommand router adapter for gsd-tools agent
artifacts.cjs Canonical artifact registry — known .planning/ root file names; used by gsd-health W019 lint
audit.cjs Audit dispatch, audit open sessions, audit storage helpers
check-command-router.cjs Thin CJS subcommand router adapter for gsd-tools check
cli-exit.cjs ExitError class and runMain() helper — CLI entrypoints throw ExitError instead of calling process.exit(); runMain() translates the outcome into process.exitCode so output flushes cleanly
cjs-command-router-adapter.cjs Shared compatibility adapter for manifest-backed CJS command-family routers
clock.cjs Injectable clock seam (now/sleep) for deterministic lock testing
clusters.cjs Skill cluster definitions for the runtime surface module (ADR-0011 Phase 2)
code-review-flags.cjs Typed flag parser for /gsd:code-review; exports parseCodeReviewFlags(argv) (→ { fix, all, auto, depth, files }) and resolveCodeReviewWorkflow(flags) (→ 'code-review.md' | 'code-review-fix.md'); canonical dispatch seam for --fix/--all/--auto routing
command-aliases.cjs Alias/subcommand metadata for manifest-backed family routers
command-arg-projection.cjs Typed flag and positional argument projection helpers shared across command-family routers
command-routing-hub.cjs Pure-result dispatch hub that centralizes mode decision (SDK vs CJS), error taxonomy, and no-throw contract for all command-family routers (#3788)
commands.cjs Misc CLI commands (slug, timestamp, todos, scaffolding, stats)
config-schema.cjs Single source of truth for VALID_CONFIG_KEYS and dynamic key patterns; imported by both the validator and the config-schema-docs parity test
config.cjs config.json read/write, section initialization; imports validator from config-schema.cjs
config-types.cjs TypeScript type definitions for the model_policy config block — ModelPolicyConfig, TierEntry, RuntimeTiers; compiled from src/config-types.cts at publish time (ADR-457)
configuration.cjs Configuration Module — canonical config loading, legacy-key normalization, defaults merge, and explicit on-disk migration; source of truth for both SDK and CJS consumers
context-utilization.cjs Pure classifier for gsd-health --context — turns (tokensUsed, contextWindow) into a { percent, state } triage result against the 60%/70% fracture-point thresholds (#2792)
core.cjs Error handling, output formatting, shared utilities, runtime fallbacks; compatibility re-exports for planning-workspace helpers
decisions.cjs Parses CONTEXT.md <decisions> blocks; accepts numeric (D-42) and alphanumeric (D-INFRA-01) IDs; returns {id, text, category, tags, trackable}
docs.cjs Docs-update workflow init, Markdown scanning, monorepo detection
drift.cjs Post-execute codebase structural drift detector (#2003): classifies file changes into new-dir/barrel/migration/route categories and round-trips last_mapped_commit frontmatter
fallow-runner.cjs Fallow audit adapter for /gsd-code-review: binary resolution (PATH then node_modules/.bin), actionable missing-binary errors, and structural findings normalization
frontmatter.cjs YAML frontmatter CRUD operations
gap-checker.cjs Post-planning gap analysis (#2493): unified REQUIREMENTS.md + CONTEXT.md decisions vs PLAN.md coverage report (gsd-tools gap-analysis)
graphify.cjs Knowledge-graph build/query/status/diff for /gsd-graphify
gsd2-import.cjs External-plan ingest for /gsd-import --from-gsd2
init-command-router.cjs Thin CJS subcommand router adapter for gsd-tools init
init.cjs Compound context loading for each workflow type
install-profiles.cjs Install profile allowlist + skill staging for --minimal install (#2762); single source of truth for which gsd-* skills/agents land in runtime config dirs
installer-migration-authoring.cjs Installer migration authoring guardrails for record metadata, explicit scopes, ownership evidence, and runtime contract citations
installer-migration-report.cjs Installer migration report projection and blocked-action guard for install/update integration
installer-migrations.cjs Installer migration planning, artifact classification, install-state persistence, journaled apply, and rollback helpers
intel.cjs Codebase intel store backing /gsd-map-codebase --query and gsd-intel-updater
learnings.cjs Cross-phase learnings extraction for /gsd-extract-learnings
legacy-cleanup.cjs Detect and remove leftover get-shit-done-cc artifacts; exports planLegacyCleanup (pure scan) and applyLegacyCleanup (thin IO applier) that root out stale files from the old package across every GSD-managed runtime config directory (#607)
milestone.cjs Milestone archival, requirements marking
model-catalog.cjs CJS adapter over the shared model catalog JSON; exports canonical runtime tier defaults, agent profile maps, alias maps, and routing metadata for all CLI consumers
model-profiles.cjs Backward-compatible profile helpers derived from model-catalog.cjs; no longer owns its own model table
package-identity.cjs Generated single source for GSD's published-package coordinates (npm name, bin name, repo slug, changelog URL, manual-install command), derived from package.json; read by the update worker, check-latest-version, and installer (#498)
package-legitimacy.cjs Registry-API package legitimacy verdicts (OK/SUS/SLOP) from npm/PyPI/crates, slopcheck optional
phase-command-router.cjs Thin CJS subcommand router adapter for gsd-tools phase
phase-lifecycle.cjs Pure-computation phase lifecycle helpers extracted from the phase-lifecycle SDK handler
phase.cjs Phase directory operations, decimal numbering, plan indexing
phases-command-router.cjs Thin CJS subcommand router adapter for gsd-tools phases
plan-scan.cjs Canonical phase-plan scanner for detecting plan and summary files in flat and nested layouts (k014)
planning-workspace.cjs Planning path/workstream seam (planningDir, planningPaths, active-workstream routing, .planning/.lock orchestration)
project-root.cjs Resolves a project root from a starting directory using four heuristics (own .planning/ guard, sub_repos config, multiRepo flag, .git heuristic)
profile-output.cjs Profile rendering, USER-PROFILE.md and dev-preferences.md generation
profile-pipeline.cjs User behavioral profiling data pipeline, session file scanning
prompt-budget.cjs Pure token-budget accounting for review prompts — estimates tokens, applies deterministic trim priority (head-shrink PROJECT.md, proportional plan truncation, drop context/research/requirements, hard-fail guard), returns structured metadata for review.max_prompt_tokens (#3081)
research-provider.cjs Research provider waterfall, confidence tiers, and planResearch (cache-hits + fetch plan)
research-store.cjs Content-addressed research cache: sha256 keys, per-source TTL staleness, two-tier (user ~/.gsd / project .planning) store
review-reviewer-selection.cjs Reviewer selection/normalization helpers for /gsd-review default reviewer policy and precedence
roadmap-command-router.cjs Thin CJS subcommand router adapter for gsd-tools roadmap
roadmap-upgrade.cjs Migration tool for converting legacy Phase N entries to milestone-prefixed Phase M-NN convention; computeMigrationPlan + applyMigration with dry-run default and atomic rollback
roadmap.cjs ROADMAP.md parsing, phase extraction, plan progress
runtime-artifact-layout.cjs Runtime artifact layout module — resolves the artifact directory shapes (commands, agents, skills) for each supported runtime; single source of truth for per-runtime artifact placement (#3663)
runtime-config-adapter-registry.cjs Explicit runtime config adapter registry — resolves per-runtime config-mutation install intent (install surface, shared-settings gate, finish-phase permission writer); see ADR-58.
runtime-name-policy.cjs Runtime name normalization policy — canonical token sanitization for runtime identifiers used in path construction and display
runtime-homes.cjs Canonical runtime → global config/skills directory mapping; first-class support for all 15 runtimes including Hermes nested layout and Cline rules-based exclusion (#3126)
runtime-slash.cjs Runtime-aware slash-command formatter — single source of truth for emitting /gsd-<cmd> (skills-based runtimes) and $gsd-<cmd> (codex) in user-facing output and persisted artifacts (#3584)
schema-detect.cjs Schema-drift detection for ORM patterns (Prisma, Drizzle, Supabase, TypeORM, Payload); exports detectSchemaFiles, detectSchemaOrm, checkSchemaDrift, SCHEMA_PATTERNS, ORM_INFO
secrets.cjs Secret-config masking convention (****<last-4>) for integration keys; exports SECRET_CONFIG_KEYS, isSecretKey, maskSecret, maskIfSecret
semver-compare.cjs Shared semver comparison policy helpers (compareSemverCore, stable-triplet validation, normalized tuple parsing) consumed by update-check hooks, statusline dev-install detection, and changeset extract range logic (#10)
security.cjs Path traversal prevention, prompt injection detection, safe JSON/shell helpers
shell-command-projection.cjs Runtime-aware shell command projection for managed hook serialization: decides PowerShell call-operator usage by runtime/platform and normalizes Windows script path tokens
state-command-router.cjs Thin CJS subcommand router adapter for gsd-tools state
state.cjs STATE.md parsing, updating, progression, metrics
state-document.cjs Pure STATE.md field extraction, replacement, status normalization, and progress calculation transforms
surface.cjs Runtime surface module — manages the runtime enable/disable surface state independently of the install-time profile marker (ADR-0011 Phase 2)
task-command-router.cjs Thin CJS subcommand router adapter for gsd-tools task
template.cjs Template selection and filling with variable substitution
uat.cjs UAT file parsing, verification debt tracking, audit-uat support
ui-safety-gate.cjs Shell-free word-boundary UI token detector (#3706, #3718); reads phase-section text from stdin, exits 0 (UI found) or 1 (no UI); also deployed to gsd-core/bin/lib/ so the GSD installer ships it to $RUNTIME_DIR (#448)
update-context.cjs Pure install-context resolver for /gsd:update — runtime/scope/config-dir/version detection (LOCAL/GLOBAL/UNKNOWN) ported from update.md bash; backs gsd-tools update-context (#498)
validate-command-router.cjs Thin CJS subcommand router adapter for gsd-tools validate
validate.cjs Pure phase variant normalization helpers (phaseVariants, buildRoadmapPhaseVariants, buildNotStartedPhaseVariants) used by verify.cjs for W006/W007 checks; no I/O, no async
verification-command-router.cjs Thin CJS subcommand router adapter for gsd-tools verification
verification.cjs Verification-status routing — consolidates pass/gaps_found/human_needed status from phase verifier-emitted VERIFICATION.md frontmatter (#651)
verify-command-router.cjs Thin CJS subcommand router adapter for gsd-tools verify
verify.cjs Plan structure, phase completeness, reference, commit validation
workstream-inventory-builder.cjs Pure workstream inventory projection builder
workstream-inventory.cjs Shared workstream inventory projection: state fields, phase/plan/summary counts, roadmap phase count, and active marker — thin orchestrator that delegates pure projection to workstream-inventory-builder.cjs
workstream-name-policy.cjs Canonical workstream name validation (isValidActiveWorkstreamName, hasInvalidPathSegment, validateWorkstreamName) and slug normalization (toWorkstreamSlug)
workstream.cjs Workstream CRUD, migration, session-scoped active pointer
worktree-base-ref.cjs Worktree base-ref drift detection and degrade decision (evaluateWorktreeBaseDegrade) plus no-clobber worktree.baseRef settings management for the base-check/set-baseref subcommands (#683)
worktree-safety.cjs Worktree-root resolution and non-destructive prune policy decisions; owns W017 health-check logic

docs/CLI-TOOLS.md may describe a subset of these modules; when it disagrees with the filesystem, this table and the directory listing are authoritative.


Hooks (17 shipped)

Full listing: hooks/.

Hook Event Purpose
gsd-statusline.js statusLine Displays model, task, directory, context usage
gsd-context-monitor.js PostToolUse / AfterTool Injects agent-facing context warnings at 35%/25% remaining
gsd-check-update.js SessionStart Background check for new GSD versions
gsd-check-update-worker.js (worker) Background worker helper for check-update
gsd-update-banner.js SessionStart Opt-in banner surfacing update availability when GSD statusline isn't used (PR #2795)
gsd-cursor-session-start.js Cursor sessionStart Cursor-native context injection at session start (issue #777)
gsd-cursor-post-tool.js Cursor postToolUse Cursor-native STATE.md update monitor after tool calls (issue #777)
gsd-prompt-guard.js PreToolUse Scans .planning/ writes for prompt-injection patterns (advisory)
gsd-workflow-guard.js PreToolUse Detects file edits outside GSD workflow context (advisory, opt-in)
gsd-read-guard.js PreToolUse Advisory guard preventing Edit/Write on unread files
gsd-read-injection-scanner.js PostToolUse Scans tool Read results for prompt-injection patterns (v1.36+, PR #2201)
gsd-worktree-path-guard.js PreToolUse Hard-blocks Edit/Write/MultiEdit with absolute paths outside the worktree root (PR #579, #260)
gsd-config-reload.js FileChanged Hot-reloads GSD config context when .planning/config.json changes mid-session (#770)
gsd-session-state.sh PostToolUse Session-state tracking for shell-based runtimes
gsd-validate-commit.sh PostToolUse Commit validation for conventional-commit enforcement
gsd-phase-boundary.sh PostToolUse Phase-boundary detection for workflow transitions
gsd-graphify-update.sh PostToolUse Auto-rebuild knowledge graph after main HEAD advances (opt-in, default off — #3347)

Maintenance

  • When a new command, agent, workflow, reference, CLI module, or hook ships, update the corresponding section here before the release is cut.
  • The drift-guard tests under tests/ (see "How To Use This File" above) assert that every shipped file is enumerated in this inventory. A new file without a matching row here will fail CI.
  • When the filesystem diverges from docs/ARCHITECTURE.md counts or from curated-subset docs (e.g. docs/AGENTS.md's primary roster), this file is the source of truth.