msd-core/gsd-core/workflows/audit-fix.md

Autonomous audit-to-fix pipeline. Runs an audit, parses findings, classifies each as auto-fixable vs manual-only, spawns executor agents for fixable issues, runs tests after each fix, and commits atomically with finding IDs for traceability.

<available_agent_types>

• gsd-executor — executes a specific, scoped code change </available_agent_types>

Extract flags from the user's invocation:

• --max N — maximum findings to fix (default: 5)
• --severity high|medium|all — minimum severity to process (default: medium)
• --dry-run — classify findings without fixing (shows classification table only)
• --source <audit> — which audit to run (default: audit-uat)

Validate --source is a supported audit. Currently supported:

• audit-uat

If --source is not supported, stop with an error:

Error: Unsupported audit source "{source}". Supported sources: audit-uat

Invoke the source audit command and capture output.

For audit-uat source:

_GSD_SHIM_NAME="gsd-tools.cjs"; _GSD_RUNTIME_ROOT="${RUNTIME_DIR:-$(git rev-parse --show-toplevel 2>/dev/null || pwd)}"; GSD_TOOLS="${_GSD_RUNTIME_ROOT}/gsd-core/bin/${_GSD_SHIM_NAME}"; if [ -f "$GSD_TOOLS" ]; then gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${_GSD_RUNTIME_ROOT}/.claude/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${_GSD_RUNTIME_ROOT}/.claude/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${_GSD_RUNTIME_ROOT}/.codex/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${_GSD_RUNTIME_ROOT}/.codex/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif command -v gsd-tools >/dev/null 2>&1; then GSD_TOOLS="$(command -v gsd-tools)"; gsd_run() { "$GSD_TOOLS" "$@"; }; elif [ -f "${CLAUDE_CONFIG_DIR:-$HOME/.claude}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${CLAUDE_CONFIG_DIR:-$HOME/.claude}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${HERMES_HOME:-$HOME/.hermes}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${HERMES_HOME:-$HOME/.hermes}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${CURSOR_CONFIG_DIR:-$HOME/.cursor}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${CURSOR_CONFIG_DIR:-$HOME/.cursor}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${CODEX_HOME:-$HOME/.codex}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${CODEX_HOME:-$HOME/.codex}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${GEMINI_CONFIG_DIR:-$HOME/.gemini}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${GEMINI_CONFIG_DIR:-$HOME/.gemini}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${COPILOT_CONFIG_DIR:-$HOME/.copilot}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${COPILOT_CONFIG_DIR:-$HOME/.copilot}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${WINDSURF_CONFIG_DIR:-$HOME/.codeium/windsurf}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${WINDSURF_CONFIG_DIR:-$HOME/.codeium/windsurf}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${AUGMENT_CONFIG_DIR:-$HOME/.augment}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${AUGMENT_CONFIG_DIR:-$HOME/.augment}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${TRAE_CONFIG_DIR:-$HOME/.trae}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${TRAE_CONFIG_DIR:-$HOME/.trae}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${QWEN_CONFIG_DIR:-$HOME/.qwen}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${QWEN_CONFIG_DIR:-$HOME/.qwen}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${CODEBUDDY_CONFIG_DIR:-$HOME/.codebuddy}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${CODEBUDDY_CONFIG_DIR:-$HOME/.codebuddy}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${CLINE_CONFIG_DIR:-$HOME/.cline}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${CLINE_CONFIG_DIR:-$HOME/.cline}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${GROK_AGENTS_HOME:-$HOME/.agents}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${GROK_AGENTS_HOME:-$HOME/.agents}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${ANTIGRAVITY_CONFIG_DIR:-$HOME/.gemini/antigravity}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${ANTIGRAVITY_CONFIG_DIR:-$HOME/.gemini/antigravity}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${OPENCODE_CONFIG_DIR:-${XDG_CONFIG_HOME:-$HOME/.config}/opencode}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${OPENCODE_CONFIG_DIR:-${XDG_CONFIG_HOME:-$HOME/.config}/opencode}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; elif [ -f "${KILO_CONFIG_DIR:-${XDG_CONFIG_HOME:-$HOME/.config}/kilo}/gsd-core/bin/${_GSD_SHIM_NAME}" ]; then GSD_TOOLS="${KILO_CONFIG_DIR:-${XDG_CONFIG_HOME:-$HOME/.config}/kilo}/gsd-core/bin/${_GSD_SHIM_NAME}"; gsd_run() { node "$GSD_TOOLS" "$@"; }; else echo "ERROR: gsd-tools.cjs not found at $GSD_TOOLS and gsd-tools is not on PATH. Run: npx -y @opengsd/gsd-core@latest --claude --local" >&2; exit 1; fi; if [ -n "${CLAUDE_ENV_FILE:-}" ] && [ -n "${GSD_TOOLS:-}" ]; then printf "export PATH='%s':\"\$PATH\"\n" "${GSD_TOOLS%/*}" >> "$CLAUDE_ENV_FILE" 2>/dev/null || true; fi
INIT=$(gsd_run query audit-uat 2>/dev/null || echo "{}")
if [[ "$INIT" == @file:* ]]; then INIT=$(cat "${INIT#@file:}"); fi

Read existing UAT and verification files to extract findings:

• Glob: .planning/phases/*/*-UAT.md
• Glob: .planning/phases/*/*-VERIFICATION.md

Parse each finding into a structured record:

• ID — sequential identifier (F-01, F-02, ...)
• description — concise summary of the issue
• severity — high, medium, or low
• file_refs — specific file paths referenced in the finding

For each finding, classify as one of:

• auto-fixable — clear code change, specific file referenced, testable fix
• manual-only — requires design decisions, ambiguous scope, architectural changes, user input needed
• skip — severity below the --severity threshold

Classification heuristics (err on manual-only when uncertain):

Auto-fixable signals:

• References a specific file path + line number
• Describes a missing test or assertion
• Missing export, wrong import path, typo in identifier
• Clear single-file change with obvious expected behavior

Manual-only signals:

• Uses words like "consider", "evaluate", "design", "rethink"
• Requires new architecture or API changes
• Ambiguous scope or multiple valid approaches
• Requires user input or design decisions
• Cross-cutting concerns affecting multiple subsystems
• Performance or scalability issues without clear fix

When uncertain, always classify as manual-only.

Display the classification table:

## Audit-Fix Classification

| # | Finding | Severity | Classification | Reason |
|---|---------|----------|---------------|--------|
| F-01 | Missing export in index.ts | high | auto-fixable | Specific file, clear fix |
| F-02 | No error handling in payment flow | high | manual-only | Requires design decisions |
| F-03 | Test stub with 0 assertions | medium | auto-fixable | Clear test gap |

If --dry-run was specified, stop here and exit. The classification table is the final output — do not proceed to fixing.

For each **auto-fixable** finding (up to `--max`, ordered by severity desc):

a. Spawn executor agent (runs in a subagent — no output until it returns, ~1–5 min; expected, not a freeze):

Agent(
  prompt="Fix finding {ID}: {description}. Files: {file_refs}. Make the minimal change to resolve this specific finding. Do not refactor surrounding code.",
  subagent_type="gsd-executor"
)

ORCHESTRATOR RULE — CODEX RUNTIME: After calling Agent() above, stop working on this task immediately. Do not read more files, edit code, or run tests related to this task while the subagent is active. Wait for the subagent to return its result. This prevents duplicate work, conflicting edits, and wasted context. Only resume when the subagent result is available.

b. Run tests:

AUDIT_TEST_CMD=$(gsd_run query config-get workflow.test_command --default "" 2>/dev/null || true)
if [ -z "$AUDIT_TEST_CMD" ]; then
  if [ -f "Makefile" ] && grep -q "^test:" Makefile; then
    AUDIT_TEST_CMD="make test"
  elif [ -f "Justfile" ] || [ -f "justfile" ]; then
    AUDIT_TEST_CMD="just test"
  elif [ -f "package.json" ]; then
    AUDIT_TEST_CMD="npm test"
  elif [ -f "Cargo.toml" ]; then
    AUDIT_TEST_CMD="cargo test"
  elif [ -f "go.mod" ]; then
    AUDIT_TEST_CMD="go test ./..."
  elif [ -f "pyproject.toml" ] || [ -f "requirements.txt" ]; then
    AUDIT_TEST_CMD="python -m pytest -x -q --tb=short"
  else
    AUDIT_TEST_CMD="true"
  fi
fi
# #1857: normalize to one-shot (defeat vitest/jest watch mode) + bound with a
# timeout so a watch-mode runner cannot hang the audit gate indefinitely.
AUDIT_TEST_CMD=$(gsd_run query normalize-test-command "$AUDIT_TEST_CMD" --cwd . 2>/dev/null || echo "$AUDIT_TEST_CMD")
TEST_GATE_TIMEOUT=$(gsd_run query config-get workflow.test_gate_timeout 2>/dev/null || echo "600")
timeout "$TEST_GATE_TIMEOUT" bash -c "$AUDIT_TEST_CMD" 2>&1 | tail -20
AUDIT_TEST_EXIT=${PIPESTATUS[0]}
if [ "$AUDIT_TEST_EXIT" -eq 124 ]; then
  echo "✗ Audit test gate timed out after ${TEST_GATE_TIMEOUT}s — likely stuck in watch/dev mode (e.g. vitest without 'run'). Run tests one-shot (e.g. 'vitest run') or raise workflow.test_gate_timeout."
fi

c. If tests pass — commit atomically:

git add {changed_files}
git commit -m "fix({scope}): resolve {ID} — {description}"

The commit message must include the finding ID (e.g., F-01) for traceability.

d. If tests fail — revert changes, mark finding as fix-failed, and stop the pipeline:

git checkout -- {changed_files} 2>/dev/null

Log the failure reason and stop processing — do not continue to the next finding. A test failure indicates the codebase may be in an unexpected state, so the pipeline must halt to avoid cascading issues. Remaining auto-fixable findings will appear in the report as not-attempted.

Present the final summary:

## Audit-Fix Complete

**Source:** {audit_command}
**Findings:** {total} total, {auto} auto-fixable, {manual} manual-only
**Fixed:** {fixed_count}/{auto} auto-fixable findings
**Failed:** {failed_count} (reverted)

| # | Finding | Status | Commit |
|---|---------|--------|--------|
| F-01 | Missing export | Fixed | abc1234 |
| F-03 | Test stub | Fix failed | (reverted) |

### Manual-only findings (require developer attention):
- F-02: No error handling in payment flow — requires design decisions

<success_criteria>

• Auto-fixable findings processed sequentially until --max reached or a test failure stops the pipeline
• Tests pass after each committed fix (no broken commits)
• Failed fixes are reverted cleanly (no partial changes left)
• Pipeline stops after the first test failure (no cascading fixes)
• Every commit message contains the finding ID
• Manual-only findings are surfaced for developer attention
• --dry-run produces a useful standalone classification table </success_criteria>