Files
msd-core/commands/gsd/graphify.md
Tom Boucher d0f916728b feat(skill-surface): install-time profiles + runtime /gsd:surface (#3408) (#3456)
* feat(skill-deps): add requires: frontmatter to all 51 skills with cross-skill references

Mechanical migration from docs/research/data/2026-05-12-skill-audit.json.
Every skill whose body references another GSD skill now declares those
dependencies in `requires:` YAML frontmatter (flow-style array).

Notable: discuss-phase, plan-phase, and execute-phase all reference `phase`,
which confirms the latent gap in MINIMAL_SKILL_ALLOWLIST — `phase` is pulled
by the core loop but was never in the allowlist. The profile closure model
(ADR-0010 Phase 1) resolves this automatically.

Closes part of #3408.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(skill-surface-budget): add PROFILES map, resolveProfile, loadSkillsManifest, staging, marker IO

Implements the Skill Surface Budget Module core (ADR-0010, Phase 1):

- PROFILES Object.freeze map: core (6 skills), standard (~13), full ('*')
- loadSkillsManifest: parses requires: frontmatter from commands/gsd/*.md
  into a Map<stem, string[]> without external YAML dep
- resolveProfile({modes, manifest}): computes transitive closure over the
  requires: graph; composable (modes=['core','audit'] unions closures)
- stageSkillsForProfile / stageAgentsForProfile: filesystem staging with
  same exit-cleanup machinery as the legacy stageSkillsForMode
- readActiveProfile / writeActiveProfile: .gsd-profile marker round-trip
- Back-compat shims preserved: MINIMAL_SKILL_ALLOWLIST, isMinimalMode,
  shouldInstallSkill (overloaded), stageSkillsForMode — all legacy tests pass

The phase latent bug is now resolved by closure: discuss-phase, plan-phase,
and execute-phase all require phase, so any profile including any of them
automatically includes phase via transitive closure.

Tests: 22 manifest+resolve, 9 stage, 10 marker (41 new tests, all green).
Back-compat anchor: 80/80 passing.

Closes part of #3408.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(skill-surface-budget): add lint-skill-deps.cjs CI gate and fix 19 missed requires: entries

Two lint checks (scripts/lint-skill-deps.cjs):
  a) Frontmatter-body consistency: skill body references must appear in requires:
  b) Profile closure: every requires: dep of any profile skill must be in closure

Running the lint revealed 19 body references missed by the audit JSON (the
audit used static analysis; some bodies have conditional references). Fixed:
  complete-milestone: +audit-milestone, discuss-phase, plan-phase, execute-phase, new-milestone
  fast: +quick
  health: +thread
  map-codebase: +new-project, plan-phase
  new-milestone, new-project, review, ultraplan-phase: +plan-phase
  ship: +verify-work
  sketch, spike: +new-project
  verify-work: +execute-phase
  workstreams: +new-milestone, resume-work

Wired into package.json as lint:skill-deps and added to pretest.
8 fixture-based tests: all green.

Closes part of #3408.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(skill-surface-budget): wire --profile= arg, profile marker write/read in bin/install.js

- Add --profile=<name> / --profile=<n1>,<n2> arg parsing (composable).
  Mutually exclusive with --minimal / --core-only (aliases for --profile=core).
  Default (no flag): full.
- Import readActiveProfile / writeActiveProfile from install-profiles.cjs.
- After writeManifest: persist active profile to .gsd-profile marker.
- gsd update path: if no --profile flag given, read existing .gsd-profile
  marker so non-full profiles are not silently re-expanded to full (ADR-0010).
- Update --help block to document --profile= with per-tier token costs.

New test: install-minimal-backcompat.test.cjs (6 tests):
  - PROFILES.core === MINIMAL_SKILL_ALLOWLIST (contract)
  - --minimal writes .gsd-profile marker "core"
  - --profile=core, --profile=standard write correct markers
  - default install writes marker "full"

Closes part of #3408.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* chore(changeset): add feat-3408-skill-profiles changelog fragment

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(install-profiles): derive agents from skill body refs and wire into resolveProfile

Deviation 1 of ADR-0010 phase 1b: tiered profiles (core, standard) now produce
a non-empty agents Set instead of always returning empty. resolveProfile() scans
each skill body for gsd-* agent name references (via new parseCallsAgents()),
stores them in _calls_agents_<stem> manifest entries, and unions them across the
resolved skill closure. stageAgentsForProfile() already checked resolvedProfile.agents
— it now gets real data so tiered profiles install the correct subset of agents
instead of zero.

Closes #3408 (partial — Deviation 1 only)

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(install): honor .gsd-profile marker on update, add resolveEffectiveProfile/mostRestrictiveProfile

Deviation 2 of ADR-0010 phase 1b: the marker written during installation is now
actually honored when re-running without explicit flags (e.g. gsd update). The
dead-end logging block is replaced by resolveEffectiveProfile(), which picks the
marker profile over 'full' when no explicit --profile= flag was given. The resolved
profile is piped through to all 13 stageSkillsForMode dispatch sites (now _stageSkills)
so updates install only the previously-chosen skill subset.

--minimal retains its back-compat behavior (strict 6-skill allowlist, no closure)
while writing 'core' to the marker. mostRestrictiveProfile() is exported for callers
that need to reconcile disagreeing markers across runtimes (smallest skill set wins).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* feat(surface): add CLUSTERS data + state IO module

Add clusters.cjs with 10 named skill groups covering all 66 skills
(verified by surface-clusters.test.cjs). Add surface.cjs with readSurface/
writeSurface atomic IO, resolveSurface, applySurface, and listSurface.
Tests: 17 passing (11 state IO + 6 cluster integrity).

Closes #3408

* docs(adr): add ADR-0011 Skill Surface Budget Module (Phase 1 accepted, Phase 2 amendment)

Records the install-time profile staging decision (Phase 1, landed) and the
runtime /gsd:surface cluster-toggle decision (Phase 2, in flight) as an
amendment. Updates the ADR README index.

Closes #3408

* docs(install-profiles): update module docblock for Phase 2 and ADR-0011

Corrects the ADR reference from 0010 to 0011, documents the three-profile
model and back-compat aliases, adds resolveEffectiveProfile precedence rule,
and notes the companion surface.cjs Phase 2 engine.

* docs(context): add Skill Surface Budget Module canonical entry

Adds the Domain terms entry for the Skill Surface Budget Module covering
both Phase 1 (install-time profiles, .gsd-profile marker) and Phase 2
(runtime /gsd:surface cluster toggles, clusters.cjs, .gsd-surface.json),
per ADR-0011 Consequences requirement.

* feat(surface): add resolveSurface and applySurface engine + tests

Tests cover: profile → surface equivalence, cluster disable/enable,
explicitAdds transitive closure, applySurface file sync (add missing,
remove superseded, preserve non-gsd files), listSurface token cost.
16 new tests passing.

* docs(readme): document --profile= flag and /gsd:surface command

Brief user-facing mention of install profiles (core/standard/full) and the
/gsd:surface slash command in the Commands table. Points to ADR-0011 for details.

* feat(surface): add /gsd:surface slash command runbook

New skill: gsd:surface — runtime profile/cluster toggle without reinstall.
Sub-commands: list, status, profile <name>, disable/enable <cluster>, reset.
Persists state to .gsd-surface.json (independent of .gsd-profile).
Description 96 chars (≤100 limit). lint:descriptions + lint:skill-deps: 0 violations.

* feat(surface): add changeset fragment for /gsd:surface runtime toggle

* feat(surface): add surface skill stem to utility cluster

surface.md is a new skill; add it to the utility cluster so the
surface-clusters.test.cjs coverage invariant stays satisfied.

* docs(adr): fix ADR references to 0011 and record Phase 2 as shipped

ADR-0010 number was already claimed by the file-operation-engine ADR; this
ADR landed as 0011-skill-surface-budget-module.md. Update inline ADR
references in clusters.cjs, surface.cjs, install-profiles.cjs, and the
Phase 2 changeset to ADR-0011. Update the ADR Status section to record
Phase 2 artifacts as shipped on this branch rather than "in progress".

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* docs(research): port skill-surface-budget memo and audit data

ADR-0011 references docs/research/2026-05-12-skill-surface-budget.md and
docs/research/data/2026-05-12-skill-audit.json, which only existed in the
research worktree. Port both onto this branch so the ADR's References
section resolves and reviewers can read the cluster taxonomy (§3.2),
dependency topology (§3.1), and option grading (§4) that justify Phase 1
and Phase 2 decisions.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(registration): register surface/clusters in INVENTORY, COMMANDS, and help.md

- surface.md: convert allowed-tools from inline YAML array to block style
  (was parsed as a single tool name "[Read, Write, Bash]" by test harness)
- docs/INVENTORY.md: add CLI module rows for clusters.cjs and surface.cjs;
  add Commands row for /gsd-surface; bump CLI Modules count 55→57, Commands 66→67
- docs/INVENTORY-MANIFEST.json: add entries for clusters.cjs, surface.cjs,
  and /gsd-surface (filename-based command key)
- docs/COMMANDS.md: add ### `/gsd-surface` heading in Configuration Commands
- get-shit-done/workflows/help.md: add /gsd:surface entry in Configuration section

Fixes registration failures introduced by Phase 2 of #3408.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* fix(surface,docs): scrub .claude leakage and escape hypothetical slash tokens

Two PR regressions introduced earlier on this branch:

1. surface.cjs JSDoc comments contained the canonical paths
   (~/.claude/commands/gsd, ~/.claude/agents) as example values, which the
   cline-install leak regex (~\/\.claude\/(?:get-shit-done|commands|agents
   |hooks)) flagged as install-time path leaks. Reworded the docblocks to
   describe runtime-resolved paths without literal ~/.claude tokens.

2. The ported research memo proposed hypothetical Option C dispatchers
   using slash syntax (/gsd:milestone, /gsd:research). The
   docs-parity-live-registry test enforces that every slash-command token
   in docs/ resolves to a real command. Rewrote the Option C sketch
   without the slash prefix and added a clarifying note that the
   dispatchers are illustrative, not shipped.

Targeted tests now pass: tests/cline-install.test.cjs and
tests/docs-parity-live-registry.test.cjs both green.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* test: remove raw output/source grep in lint tests

* fix: close coderabbit profile and requires issues

* test: align surface token-cost assertion wording

* fix(install): align core profile alias and defer profile marker write

---------

Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-13 12:45:16 -04:00

8.0 KiB

name, description, argument-hint, allowed-tools, requires
name description argument-hint allowed-tools requires
gsd:graphify Build, query, and inspect the project knowledge graph in .planning/graphs/ [build|query <term>|status|diff]
Read
Bash
config
fast
phase
update

STOP -- DO NOT READ THIS FILE. You are already reading it. This prompt was injected into your context by Claude Code's command system. Using the Read tool on this file wastes tokens. Begin executing Step 0 immediately.

CJS-only (graphify): graphify subcommands are not registered on gsd-sdk query. Use node $HOME/.claude/get-shit-done/bin/gsd-tools.cjs graphify … as documented in this command and in docs/CLI-TOOLS.md. Other tooling may still use gsd-sdk query where a handler exists.

Step 0 -- Banner

Before ANY tool calls, display this banner:

GSD > GRAPHIFY

Then proceed to Step 1.

Step 1 -- Config Gate

Check if graphify is enabled by reading .planning/config.json directly using the Read tool.

DO NOT use the gsd-tools config get-value command -- it hard-exits on missing keys.

  1. Read .planning/config.json using the Read tool
  2. If the file does not exist: display the disabled message below and STOP
  3. Parse the JSON content. Check if config.graphify && config.graphify.enabled === true
  4. If graphify.enabled is NOT explicitly true: display the disabled message below and STOP
  5. If graphify.enabled is true: proceed to Step 2

Disabled message:

GSD > GRAPHIFY

Knowledge graph is disabled. To activate:

  node $HOME/.claude/get-shit-done/bin/gsd-tools.cjs config-set graphify.enabled true

Then run /gsd:graphify build to create the initial graph.

Step 2 -- Parse Argument

Parse $ARGUMENTS to determine the operation mode:

Argument Action
build Run inline build (Step 3)
query <term> Run inline query (Step 2a)
status Run inline status check (Step 2b)
diff Run inline diff check (Step 2c)
No argument or unknown Show usage message

Usage message (shown when no argument or unrecognized argument):

GSD > GRAPHIFY

Usage: /gsd:graphify <mode>

Modes:
  build           Build or rebuild the knowledge graph
  query <term>    Search the graph for a term
  status          Show graph freshness and statistics
  diff            Show changes since last build

Step 2a -- Query

Run:

node $HOME/.claude/get-shit-done/bin/gsd-tools.cjs graphify query <term>

Parse the JSON output and display results:

  • If the output contains "disabled": true, display the disabled message from Step 1 and STOP
  • If the output contains "error" field, display the error message and STOP
  • If no nodes found, display: No graph matches for '<term>'. Try /gsd:graphify build to create or rebuild the graph.
  • Otherwise, display matched nodes grouped by type, with edge relationships and confidence tiers (EXTRACTED/INFERRED/AMBIGUOUS)

STOP after displaying results. Do not spawn an agent.

Step 2b -- Status

Run:

node $HOME/.claude/get-shit-done/bin/gsd-tools.cjs graphify status

Parse the JSON output and display:

  • If exists: false, display the message field
  • Otherwise show last build time, node/edge/hyperedge counts, and STALE or FRESH indicator
  • If built_at_commit is non-null, also display a Source commit: line:
    • commit_stale === false (rebuilt at HEAD): Source commit: <built_at_commit> (current)
    • commit_stale === true (graph behind HEAD): Source commit: <built_at_commit> (<commits_behind> commits behind HEAD)
    • commit_stale === null (unreachable commit / no git): Source commit: <built_at_commit> (freshness unknown)
  • If built_at_commit is null (pre-graphify-v0.7 graph), omit the source-commit line entirely — do not render "Source commit: unknown"

The mtime-based STALE/FRESH flag and the commit-based commit_stale measure different things and can disagree (e.g., a CI-built graph rebuilt minutes ago against an old checkout reads as FRESH on mtime but commit_stale: true). Surface both so the agent can choose.

STOP after displaying status. Do not spawn an agent.

Step 2c -- Diff

Run:

node $HOME/.claude/get-shit-done/bin/gsd-tools.cjs graphify diff

Parse the JSON output and display:

  • If no_baseline: true, display the message field
  • Otherwise show node and edge change counts (added/removed/changed)

If no snapshot exists, suggest running build twice (first to create, second to generate a diff baseline).

STOP after displaying diff. Do not spawn an agent.


Step 3 -- Build (Inline)

Run the pre-flight check first:

node "$HOME/.claude/get-shit-done/bin/gsd-tools.cjs" graphify build

Parse the JSON output:

  • If disabled: true: display the disabled message from Step 1 and STOP
  • If error: display the error message and STOP
  • If action: "spawn_agent": pre-flight passed -- proceed with the inline build below

(The spawn_agent action name is historical. The skill now performs the build inline because graphify v0.7+ split the build into a fast AST-extraction phase and a separate clustering + report-write phase. Sub-agent isolation kept the cached extraction phase alive but SIGTERM'd the post-extraction phase when the agent exited, leaving the cache populated but no graph.json artifacts written. The CLI still emits the spawn_agent signal so external callers and tests keep working.)

Display:

GSD > Building knowledge graph...

Run the build, copy artifacts, write the diff snapshot, and report the summary in a single foreground Bash call so the whole pipeline survives to completion. Use a timeout of 600000 ms (10 minutes), which covers the graphify.build_timeout ceiling (default 300 s) with margin:

graphify update . \
  && cp graphify-out/graph.json .planning/graphs/graph.json \
  && cp graphify-out/graph.html .planning/graphs/graph.html \
  && cp graphify-out/GRAPH_REPORT.md .planning/graphs/GRAPH_REPORT.md \
  && node "$HOME/.claude/get-shit-done/bin/gsd-tools.cjs" graphify build snapshot \
  && node "$HOME/.claude/get-shit-done/bin/gsd-tools.cjs" graphify status

Do NOT pass run_in_background: true. Typical builds complete in 15-60 seconds and the entire chain must run foreground.

If the chain fails (non-zero exit):

  • Display: ## GRAPHIFY BUILD FAILED followed by the captured stderr
  • Do NOT delete .planning/graphs/ -- the prior valid graph remains available
  • STOP

If the chain succeeds:

  • Parse the trailing graphify status JSON
  • Display: ## GRAPHIFY BUILD COMPLETE with the node, edge, and hyperedge counts

MVP-Mode Node Rendering

MVP-mode rendering. When a phase has **Mode:** mvp in ROADMAP.md (resolved via gsd-sdk query roadmap.get-phase --pick mode), render its graph node with two distinct visual signals:

  1. Distinct fill color. Use #22c55e (green) for MVP-mode phase nodes. Standard phases keep the default fill color. Two-channel signaling (color + label) handles color-blind and grayscale renders.
  2. MVP label suffix. Append (MVP) to the node's label text. Example: a phase originally labeled Phase 1: User Auth renders as Phase 1: User Auth (MVP).

Both signals fire together — never just one. Per PRD Q5 decision, the goal is unambiguous visual distinction in any render context.

When the phase mode is null/absent, render with the standard color and label — no behavioral change for non-MVP phases.


Anti-Patterns

  1. DO NOT spawn an agent for any operation -- build, query, status, and diff all run inline. Sub-agent isolation terminates background bash when the agent exits, which previously truncated graphify builds mid-write and left only the cache populated (#3166).
  2. DO NOT pass run_in_background: true for the build chain -- the operation is fast and must complete in the foreground.
  3. DO NOT modify graph files directly -- always go through graphify update . and the snapshot CLI.
  4. DO NOT skip the config gate check.
  5. DO NOT use gsd-tools config get-value for the config gate -- it exits on missing keys.