* test(#4667): add failing-first coverage for the codex @-include rewrite Behavioral end-to-end: a real in-process install(true,'codex') into a temp CODEX_HOME must leave zero @~/.claude includes in GSD-owned .md artifacts, rewrite the issue's own example include to @~/.codex/, keep the deliberate _GSD_RUNTIME_ROOT .claude fallback chains byte-identical, and stay idempotent across a reinstall (no doubled prefix). All four are RED until the installer grows the manifest-scoped rewrite pass. * fix(#4667): rewrite codex @ includes to the codex install root Codex-installed agents and commands kept @~/.claude/gsd-core/... (and @/Users/trekkie/.claude/gsd-core/...) include references pointing into the Claude install: silent wrong-copy reads on dual-runtime machines at divergent versions, missing files on codex-only ones. Several emitters bypass the per-runtime converters, so the per-emitter fixes since #570 rotted. Adds a manifest-scoped rewrite pass in install() beside the leak scanner: for codex, every manifest-tracked .md/.toml artifact has the @-include forms rewritten to the codex root. The pass matches the exact include literal only — the _GSD_RUNTIME_ROOT/$PREFERRED_CONFIG_DIR fallback chains, prose .claude mentions, and CHANGELOG.md are untouched — and runs before the scanner, which remains the verification backstop for anything a future emitter introduces. * test(#4667): cover the HOME-anchored include form and sync the pass comment Adds behavioral coverage for the second rewrite literal (@$HOME/.claude/gsd-core/ -> @$HOME/.codex/gsd-core/) via the plan-review-convergence command, and corrects the pass's comment: the agent .tomls are generated after it and prefix themselves, so the .toml branch of the rewrite is inert by design. * test(#4667): baseline the offline upgrade against the deployed tree (sanctioned) * chore(#4667): backfill changeset PR number (4858) * test(#4667): sandbox the install home in the include-rewrite tests (#3712 guard) * test(#4667): install via subprocess with an isolated env in the include-rewrite tests --------- Co-authored-by: sim <sim@local>
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