Lex Christopherson 767bef64ef fix(#484): persist research decision from new-milestone to config ...

When user selects "Skip research" during /gsd:new-milestone, the choice
was not saved to .planning/config.json. Later, /gsd:plan-phase would
read the default (research: true) and spawn researchers anyway.

- Add `config-set` command to gsd-tools.js for setting nested config values
- Update new-milestone workflow to persist research choice after user decides

Closes #484

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

2026-02-08 09:47:15 -06:00

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