9e6c404151
* fix(#663): resolve open CodeQL/Dependabot security alerts (ReDoS, prototype pollution, workflow perms, qs DoS) (#665) * fix(#663): resolve open CodeQL/Dependabot security alerts - ReDoS: collapse ambiguous nested quantifiers in phase-heading regexes (verify/validate/commands) and the plan-filename lookahead (phase) to provably-equivalent non-backtracking forms - prototype pollution: guard __proto__/constructor/prototype in setConfigValue - remove dead no-op .replace(/-/g,'-') in phase.cts - escape all regex metachars in bug-2839 test - add contents:read permissions to security-scan + install-smoke workflows - pin qs >= 6.15.2 via overrides (DoS GHSA) - broaden prompt-injection allowlist to translated security-model docs Closes #663 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * test(#663): regression tests for prototype-pollution guard and roadmap-phase ReDoS Behavioral test that config-set rejects __proto__/constructor/prototype keys without polluting Object.prototype, plus a ReDoS guard (timing-bound) and behavior-preservation assertions for the collapsed phase-heading regexes. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * test(#663): make ReDoS regression assert structured result, not elapsed time Replace elapsed-time assertions (which tripped local/no-elapsed-assertion ESLint rule and were unsound for synchronous ReDoS) with structured-result assertions on adversarial inputs: assert that malformed phase headings/ unchecked-item lines without a terminating colon/space yield an empty Set, which is both the correct behavior and an exercise of the fixed linear regex on the catastrophic-backtracking input shape. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#663): add Security changeset fragment for #665 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * test(#663): fold prototype-pollution regression into config.test.cjs The standalone bug-663-config-prototype-pollution.test.cjs was a 9th config-module test file, tripping lint-test-file-count (the allowlist is ratcheted and must not grow). Consolidated into config.test.cjs instead. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * chore(#660): bump next to 1.3.1-dev.0 (-dev stream per ADR 660) (#672) After the 1.3.0 release, next moves onto the -dev prerelease stream so the trunk self-identifies as unreleased (floor = next patch). First manual exercise of the ADR-660 release model. Refs #660 Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * ci(#660): use scoped GSD_BOT_PR_TOKEN for backmerge & release merge-back PR creation (#673) The open-gsd org blocks the Actions GITHUB_TOKEN from creating PRs, so auto-backmerge and the release finalize merge-back PR steps can't open their PRs (must be done manually). Point those two steps at a scoped secret (pull-requests:write + contents:write), falling back to GITHUB_TOKEN so behavior is unchanged until the secret is added. Refs #660 Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * fix: accept published installer migration checksums * fix(#670): self-healing recovery for installer-migration checksum drift (#675) Editing the body of an already-released installer migration drifts its computed checksum (it hashes plan.toString()). The integrity guard then hard-aborted every prior install on upgrade with "applied migration checksum changed" — a 100% reproducible blocker (v1.3.0, all platforms). Already-applied migrations are filtered out of `pending` and never re-run, so a drifted checksum is functionally inert. ADR-0008 anticipates checksum-mismatch state as something the install-state layer must handle gracefully (plan -> apply -> recover/report), not abort on. This supersedes the published-checksum allowlist merged in #674 (per-release maintenance debt — every historical checksum hand-pinned, still throws for any unregistered value) with a general, self-healing recovery: - Replace the throwing guard with non-fatal `collectAppliedChecksumDrift`, surfaced on `plan.checksumDrift`. - Reconcile drifted stored checksums durably on the next state write (`reconcileDriftedChecksums`), idempotently (no perpetual writes). - Relocate the "shipped migration bodies are immutable" rule to a CI baseline test that locks every shipped migration's checksum and fails on body drift — where #615 should have been caught, instead of blocking users. Removes #674's legacyChecksums field, per-migration checksum pins, published-checksums.json fixture, and compat test. Fixes #670 Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * fix(#676): consolidate hotfix into release.yml (delete standalone hotfix workflow) (#678) * fix(#676): consolidate hotfix into release.yml; delete standalone hotfix workflow npm allows only one trusted publisher per package and it is release.yml, so the standalone hotfix.yml (token-auth) could never publish via OIDC (ENEEDAUTH on the v1.3.1 finalize). Fold the patch/hotfix path into release.yml — the sole OIDC trusted publisher — and delete hotfix.yml. - validate-version accepts X.Y.Z (Z>0) → hotfix/X.Y.Z + base_tag; rejects rc for hotfixes; X.Y.0 still → release/X.Y.0. - create branches hotfix/X.Y.Z from the base tag with optional auto-cherry-pick (default on) of fix:/chore: from next; release path unchanged. - finalize is branch-agnostic already and publishes @latest via the existing OIDC trusted publisher (no NODE_AUTH_TOKEN). - CONTRIBUTING branching table updated; hotfix.yml removed. Fixes #676 Supersedes #677. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#676): add hotfix/patch path to release.yml (OIDC trusted publisher) The companion to the hotfix.yml deletion: release.yml now handles patch versions (X.Y.Z) via hotfix/X.Y.Z branches and publishes @latest through the existing OIDC trusted publisher. CONTRIBUTING branching table updated. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * fix(#676): update tests/docs referencing deleted hotfix.yml (#680) hotfix.yml was deleted (folded into release.yml). Remove the now-broken release-coverage-scope and policy-release-no-npm-self-upgrade assertions that readFileSync'd hotfix.yml (release.yml equivalents retained), drop the dead install-smoke.yml path trigger, and update VERSIONING.md / docs/branching.md prose to describe hotfixes via the Release workflow with a patch version. Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * fix: bump hono to 4.12.23 on next to clear moderate advisory Same moderate hono advisory (GHSA-3hrh-pfw6-9m5x et al.) that blocked the 1.3.1 hotfix is present on next (was 4.12.19); bump to keep the npm-audit gate green. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#690): promote CHANGELOG 1.3.x + gate release-notes promotion (#694) * fix(#690): promote CHANGELOG 1.3.x + gate release-notes promotion /gsd:update showed an empty "What's New" preview after updating to 1.3.1 because CHANGELOG.md's 1.3.x content was never promoted out of [Unreleased] into dated sections, so `scripts/changeset/cli.cjs extract` returned exit 2 ("no releases in range"). - CHANGELOG.md: split [Unreleased] into dated [1.3.0] and [1.3.1] sections (1.3.1 = hono advisory bump + installer-migration checksum self-heal, #670; 1.3.0 = the feature release), restoring an empty [Unreleased]. - scripts/changeset/cli.cjs: new `verify` subcommand that exits non-zero when CHANGELOG has no dated `## [x.y.z]` heading for a version; hoist shared stripV/resolveChangelogPath helpers used by extract + verify. - .github/workflows/release.yml: gate the finalize job on `verify` (after the build, before tag/publish) so an unpromoted CHANGELOG can never ship again. - gsd-core/workflows/update.md: move `rm -f $CHANGELOG_TMP` after the human-readable extract re-run so the preview no longer degrades to "(changelog unavailable)". - tests: regression guard for the 1.3.x headings + extract range + verify command coverage (present/absent/undated/v-prefixed/--json/prerelease). Closes #690 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#690): add changeset fragment for #694 Fixed-type fragment for the user-facing /gsd:update preview fix and the release-notes promotion gate. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * fix(#698): make auto-backmerge main→next actually land (admin-merge via PAT) (#699) The Auto Back-Merge workflow could open a back-merge PR but never landed it, and silently reported success on failure. Fixes: - Merge via admin bypass using GSD_BOT_PR_TOKEN (the PAT) instead of auto-merge, since back-merge PRs structurally can't satisfy next's required checks (Issue-link / PR-template / changeset-lint). - Stop swallowing create/merge failures with "|| echo ::warning" — real failures now fail the job. (That greenwashing hid the whole bug.) - Resolve the PR number with `--jq '.[0].number // empty'` (a no-match returns the string "null", not empty) and capture a freshly-created PR's number from the create URL to avoid GitHub API eventual-consistency races. - Merge the exact PR number (env-bound) rather than by branch name. - Force-push the disposable SHA-named bot branch, guarded by a chore/backmerge-main-to-next-* name check so a mislabeled PR can't redirect the force-push. - Apply labels non-fatally so a missing label can't abort PR creation. - On a genuine merge conflict, fail loudly (::error + exit 1) instead of pushing an empty branch and opening a PR with no diff. Closes #698 Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * fix(#637): route 3 more workflows through gsd_run launcher (hardcoded $HOME sweep) (#642) * fix(#637): route 3 more workflows through gsd_run launcher (hardcoded $HOME sweep) The hardcoded `node "$HOME/.claude/gsd-core/bin/gsd-tools.cjs"` invocation form fixed in plan-phase.md (#621) survived in three more workflows. Same bug class: on a global/shim-only install with no project-local runtime, the hardcoded path can miss a working install, so the step reports the tool "not found" instead of resolving it via the launcher. #3668 introduced gsd_run resolution; these sites were missed. - plan-review-convergence.md: convert the 3 hardcoded invocations (init, roadmap get-phase, state planned-phase) to gsd_run. File already carried the canonical preamble (first gsd_run is the earlier convergence-enabled check). - ingest-docs.md, spec-phase.md: convert their hardcoded invocations to gsd_run and inject the canonical launcher preamble via `node scripts/sync-runtime-launcher.cjs` (these files previously had no gsd_run and no preamble). The injected preamble is byte-equal to _runtime-launcher.snippet.sh and precedes the first gsd_run call, per runtime-launcher-parity invariant (B). - Add tests/bug-637-workflow-no-hardcoded-home-tool.test.cjs: repo-wide regression guard asserting NO workflow .md invokes gsd-tools via a hardcoded $HOME path. Generalizes the plan-phase-only guard from #621 — the parity test guards retired $GSD_SDK / bare /gsd-tools tokens but not this form, which is how it survived across four files. Fails on the pre-fix files, passes after. runtime-launcher-parity 7/7; full unit suite green (3477 pass / 0 fail). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * chore(#637): add changeset fragment for PR #642 Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * test(#637): update stale bug-2801 assertion to expect gsd_run bug-2801 pinned ingest-docs.md to the hardcoded node "$HOME/.../gsd-tools.cjs" init form, which #637 replaces with the gsd_run launcher. Flip the assertion to expect gsd_run init ingest-docs; the bare-gsd-tools rejection and CLI-handler tests are unchanged, and bug-637's repo-wide guard now owns the no-hardcoded-$HOME invariant. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com> Co-authored-by: Tom Boucher <trekkie@nomorestars.com> * fix(#705): route hardcoded $HOME gsd-tools invocations in agents/commands through gsd_run (#707) * fix(#705): route hardcoded $HOME gsd-tools invocations in agents/commands through gsd_run The hardcoded `node "$HOME/.claude/gsd-core/bin/gsd-tools.cjs" <cmd>` form (fixed for workflows in #621/#637) survived in agent/command surfaces and misresolves on global/shim-only installs. Route every agent-executed invocation through the resolved `gsd_run` launcher in gsd-phase-researcher, gsd-planner (load_graph_context extracted to a shared reference to stay under the planner size budget), import, and graphify. Add a regression guard over agents/ + commands/ + gsd-core/references/ bash blocks. User-facing display messages and docs are intentionally left untouched. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#705): use repo changeset fragment format (type: Fixed, pr: 707) The hand-written fragment used the standard changesets package format (package: bump) which lacks the type:/pr: frontmatter the repo's docs-required lint consumes (fail_malformed_fragment / missing_type). Regenerated via scripts/changeset/new.cjs. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * fix(#685): set windowsHide on all Windows child-process spawns (#688) * fix(#685): set windowsHide on all Windows child-process spawns A visible "gsd-core" console window flashed on Windows whenever a gsd-core child process spawned without `windowsHide: true`. The most visible offenders fire on every SessionStart / `/clear` (execNpm's `shell:true` npm view via the update-check worker) and on every Edit/Write/MultiEdit in a worktree (the worktree-path guard's git probe). Add `windowsHide: true` to every external-binary spawn in the runtime source: - hooks/gsd-context-monitor.js (record-session spawn) - hooks/gsd-worktree-path-guard.js (SPAWNOPT) - hooks/gsd-workflow-guard.js (git branch --show-current) - src/shell-command-projection.cts (execGit / execNpm / execTool) - src/check-command-router.cts (git log execFileSync) - src/roadmap-upgrade.cts (git status/rev-parse/reset/clean execSync) gsd-check-update.js already had it (the precedent). probeTty's tty call is POSIX-only and intentionally untouched. Adds a regression test that asserts each site plus a repo-wide completeness guard so a future external-binary spawn that omits windowsHide fails CI. No behavior change off-Windows. Closes #685 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#685): set changeset pr number to 688 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * fix(#687): bound agy print mode with its native --print-timeout (#689) `/gsd-review --agy` hung indefinitely on large prompts. agy's print mode runs the full tool-enabled agent, and on a big, file-path-rich prompt its agentic Cascade loops on the code_search/grep tool and never converges; the transcript fallback only runs after agy exits, so it can't recover a run that never exits. The agy CLI exposes no per-tool deny (that lives in the Antigravity SDK), but it does expose --print-timeout — agy's native print-mode cap. Pass it explicitly so a stalled run self-terminates through the tool's own mechanism; a non-zero exit discards any partial output so the existing transcript fallback / "review failed" stub take over. Adds a regression test. Closes #687 Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * fix(#669): /gsd-review --cursor actually invokes cursor-agent (#686) * fix(#669): /gsd-review --cursor actually invokes cursor-agent The Cursor reviewer branch in review.md never ran the agent: - detection probed `cursor` (the IDE launcher) instead of the headless `cursor-agent` binary - the invocation used the two-token `cursor agent` (the IDE treats `agent` as a file-path argument, so the agent never starts) - the prompt was piped via stdin, but `cursor-agent -p` reads the prompt from a command-line argument, and `2>/dev/null` hid the empty result Probe `cursor-agent`; invoke `cursor-agent -p --mode ask --trust --output-format text` with the prompt passed as a file-path-reference argument (avoids the OS arg-length limit on large prompts); capture stderr so failures are diagnosable. Invert tests/cursor-reviewer.test.cjs to assert the corrected contract, with negative guards against the two-token form and the stdin pipe. The sibling `agy` reviewer already used the argument form. Closes #669 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#669): set changeset pr number to 686 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * chore: archive 463 shipped changeset fragments before wiring render (#714) CHANGELOG promotion was a manual operator step that was never run, so 463 fragments for work already shipped in <=1.3.1 accumulated in .changeset/. Their notes were already hand-curated into the dated [1.2.0]/[1.3.0]/[1.3.1] CHANGELOG sections (#690 backfill, PR #694). Rendering them now would duplicate and mis-attribute shipped work. Move them to .changeset/archived/ (read non-recursively by all changeset tooling, so never rendered), keeping only the 3 genuinely-unreleased fragments at the top level. Prep for wiring `render` into the release finalize job (#690 follow-up). Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * chore(release): wire CHANGELOG render into release finalize job (#690 follow-up) (#715) * feat(#690): wire CHANGELOG render into release finalize job CHANGELOG promotion has always been a manual operator step, which is why 1.3.0/1.3.1 shipped unpromoted (#690). PR #694 added a `verify` latch that fails a release lacking a dated heading, but nothing performed the promotion. Wire `changeset render` into the finalize job, after build/test and before the verify gate, committing the promoted CHANGELOG so it ships with the release. Add a `--allow-empty` flag to cmdRender so a zero-fragment release still emits a dated heading (with a '_No notable changes._' placeholder) instead of writing nothing and tripping the verify gate. Note: requires the changeset-archive cleanup (separate PR) to land first, so the first render consumes only genuinely-unreleased fragments. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#713): set changeset pr number to 715 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * docs: document --only and --text flags for /gsd-autonomous (#695) (#716) Adds --only N and --text to the COMMANDS.md reference table and the run-phases-autonomously how-to guide, revised to fit the Diataxis framework (reference: factual/parallel rows; how-to: goal-framed sections). * feat(#656): Research module — content-addressed cache + provider seam + registry-API legitimacy (#664) * feat(#656): add Research Store module (content-addressed cache, TTL staleness) Content-addressed research cache behind a clock seam: researchKey (sha256, deterministic), putResearch/getResearch ({hit,stale}, never throws), ttlForSource (curated HIGH 30d / MED 7d / web LOW 1d), two-tier resolveStorePath (curated -> ~/.gsd/research-cache, web/synthesis -> project .planning/research/.cache). 28 behavioral + property tests; boundary coverage at ttl-1/ttl/ttl+1. Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(#656): add Research Provider module (waterfall + confidence + plan) Single source of truth for the Balanced provider waterfall (docs Context7->Ref->Jina, web Exa+Tavily, fallback Perplexity/Brave, Firecrawl scrape-only). classifyConfidence stamps HIGH|MEDIUM|LOW by provider (never throws). providerAvailability maps config flags to usable providers. planResearch checks the Research Store (injected seam) and returns cache-hits + a per-question fetch plan, falling through the waterfall to the always-available websearch terminal. 22 behavioral + property tests. Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(#656): add Package Legitimacy module (registry-API verdicts, slopcheck optional) Replaces the pip-install-or-degrade slopcheck prose gate with code: classifyPackage (pure, never throws) computes OK|SUS|SLOP from tunable thresholds (minAgeDays 30, minWeeklyDownloads 1000, requireRepo). checkPackages queries injectable npm/PyPI/crates registry adapters (real https with 5s timeout, degraded-not-thrown on failure); slopcheck is one optional adapter that can only escalate severity, never degrade to [ASSUMED]. 34 behavioral + property tests; boundary coverage on age and downloads (limit-1/limit/limit+1). Known follow-up: real npm adapter must add api.npmjs.org last-week downloads fetch (currently null -> unknown-downloads). Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(#656): detect Tavily/Ref/Perplexity/Jina provider keys; complete npm downloads adapter config: add tavily_search/ref_search/perplexity/jina availability flags (env var or ~/.gsd/<x>_api_key), mirroring brave_search/exa_search/firecrawl, so the Research Provider waterfall can gate them. package-legitimacy: real npm adapter now fetches api.npmjs.org last-week downloads (bounded, degraded-not-thrown) so weeklyDownloads is populated. +12 config tests; 34 legitimacy tests unchanged. Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(#656): expose Research seam via gsd-tools query (research-plan, research-store, package-legitimacy) Routes the L2-hybrid surface so agents reach it as CLI: 'query research-store get/put' (cache, HOME-sandboxable), 'query research-plan --input' (cache-hits + fetch plan from planResearch), 'query package-legitimacy check --ecosystem' (async registry verdicts). Commands skip .planning root resolution and appear in top-level usage. 5 behavioral runGsdTools tests; command-contract unchanged (335). Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * docs(#656): document Research module (CONTEXT predicates, ADR-0656, architecture, changeset) Adds GSD-RESEARCH.* + DEFECT.RESEARCH-PROVIDER-PROSE-DRIFT predicates to CONTEXT.md, ADR-0656 recording the L2-hybrid seam decision, a docs/ARCHITECTURE.md Research Module subsection, and an Added changeset fragment (pr:0, backfill on PR). Notes the #657 deferrals (agent collapse + install.js MCP mapping). Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * chore(#656): sync inventory for research modules Regenerate INVENTORY-MANIFEST.json and bump docs/INVENTORY.md CLI Modules count 82->85 with rows for research-store/research-provider/package-legitimacy (DEFECT.INVENTORY-DRIFT). Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * chore(#656): eslint-ignore generated research .cjs artifacts (ADR-457) research-store/research-provider/package-legitimacy .cjs are tsc-generated from src/*.cts, so they belong in the ESLint ignore block (lint the .cts source, not the emitted .cjs). Fixes tests/551-eslint-bin-lib-coverage. Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * chore(#656): backfill changeset pr number to #664 Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * chore(#656): satisfy eslint lint-tests gate Fix 20 eslint errors in the new research files: use helpers.cleanup() instead of raw fs.rmSync() in tests (local/no-raw-rmsync-in-tests, Windows-EBUSY retry budget); drop redundant '| string' union members and unnecessary type assertions; deterministic object normalization in researchKey (no-base-to-string). Logic unchanged; 6180 tests still green. Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(#656): harden package legitimacy per review (W1/W2/I3/I4) W1: httpsGet now reads statusCode; npm/PyPI/crates map 404 -> exists:false -> SLOP (registry-existence is the #1 slopsquatting defense; previously only npm caught it). Transport made injectable (_setHttpGet) for hermetic 404 tests. W2: suspicious-postinstall is now terminal SLOP independent of the optional slopcheck adapter, and the regex drops the bare https?:// arm (over-fired on esbuild/sharp/node-gyp) for shell-exec/download-exec signatures only. I3: checkPackages now threads version to registry.lookup and adapters verify that specific version exists. I4: moreServerVerdict -> moreSevereVerdict. +11 regression tests (all RED-first); 45 total green. Addresses review by @davesienkowski on #664. Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(#656): research-store tier coherence + freshness + version TTL (W4/I1/I2/I4) I1: tier now derives from source (curated -> user ~/.gsd, else -> project .planning), not kind, so put-tier and get-tier can't diverge; kind is a key component only. W4: getResearch searches both tiers and returns the freshest (non-stale preferred), never letting a stale curated entry shadow a fresh web one; blank version caps TTL at 1 day (no 30d on version-blind keys). I2: atomic platformWriteSync instead of raw fs.writeFileSync on the shared global path. I4: dropped the dead ttlForSource arm. CLI get now searches both tiers. +5 RED-first regression tests; 38 green. Addresses review by @davesienkowski on #664. Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(#656): expose classifyConfidence as a CLI route, killing dead code (W3) Adds 'gsd-tools query classify-confidence --provider X [--verified]' so research agents get the confidence tier FROM CODE (provider waterfall + verification lever) instead of asserting it in prose. classifyConfidence previously had no runtime caller. HIGH means 'trusted provider'; --verified raises web results to MEDIUM (verification semantics documented in ADR-0656). +4 behavioral tests. Addresses review by @davesienkowski on #664 (W3). Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(#656): close Codex adversarial-review findings (path-traversal, version-age, malformed-cache) HIGH: research key must be 64-hex sha256 (isValidResearchKey) + resolved-path containment check in put/get + CLI validation -> blocks '../../x' arbitrary-file-write. HIGH: package legitimacy now derives publishedAt from the REQUESTED version (npm time[version], PyPI releases[version] upload_time, crates versions[].created_at) so a new malicious version of an old package can't inherit old age and evade 'too-new'. MEDIUM: getResearch validates entry shape (finite fetched_at + positive ttl + required fields) -> malformed cache entry is a miss, not fresh-forever. +regression tests (RED-first); 111 green. Codex adversarial review (required pre-PR gate). Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(#656): close code-review correctness findings (1) package-legitimacy CLI now rejects unknown --flags instead of silently consuming the following package as a flag value; only --ecosystem takes a value. (2) crates recent_downloads (90-day) normalized to a weekly figure before the minWeeklyDownloads threshold (was ~13x too lenient). (3) research-plan --input validates parsed JSON is an object with an Array questions before destructuring -> clean usage error instead of an uncaught TypeError on null/bad input. (4) research-store put rejects a flag value that is itself a --flag (no more storing '--source' as content). (5) planResearch skips questions whose text is not a non-empty string instead of emitting question:undefined. +13 RED-first regression tests; 143 green. Code-review gate. Issue #656. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * refactor(#657): extract researcher documentation_lookup to shared @-reference 6 researcher agents carried a near-duplicate <documentation_lookup> block; consolidate into gsd-core/references/research-documentation-lookup.md (@-included). Unifies the ctx7 CLI fallback to the safer 'command -v ctx7' guard (drops silent 'npx --yes ctx7@latest' execution in 5 agents). Behavior-preserving dedup; inventory 63->64 references. Phase A of the agent collapse. Issue #657. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * refactor(#657): extract researcher philosophy + verification-protocol to shared @-references philosophy and the pitfalls+pre-submission-checklist common-core were near-duplicated in project/phase researchers; consolidate into gsd-core/references/research-{philosophy,verification-protocol}.md (@-included). phase-researcher keeps its 3 extra checklist items inline. Pre-submission domains checklist made agent-agnostic so project-researcher doesn't lose features/architecture coverage. Write-contract intentionally left inline (bug-214 tests assert it verbatim). Inventory 64->66 refs. Behavior-preserving. Phase A. Issue #657. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(#657): wire gsd-phase-researcher to the Research seam (Phase B / S1) The phase researcher now CALLS the code seam instead of carrying inline mechanics: provider waterfall -> 'gsd-tools query research-plan' (+ research-store put to cache digests); confidence-tier prose -> 'gsd-tools query classify-confidence'; slopcheck pip-install protocol -> 'gsd-tools query package-legitimacy check'. This makes the Research module a real runtime consumer (validates the seam end-to-end, addresses reviewer S1) and removes the duplicated waterfall/confidence/slopcheck prose. RESEARCH.md output contract, commit step, structured returns, and Phase-A @-includes unchanged. package-legitimacy-gate.test.cjs rewritten prose-grep -> behavioral (asserts the seam invocation). Issue #657. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(#657): wire gsd-project-researcher to the seam + add tavily/ref/jina MCP tools (Phase C.1) project-researcher now calls gsd-tools query research-plan / classify-confidence (+ research-store put) instead of the inline provider waterfall + confidence-tier prose (mirrors the phase-researcher rewire; no package-legitimacy — phase-only). Output contract (STACK/FEATURES/ARCHITECTURE/PITFALLS/SUMMARY.md + sections, no-commit, structured returns, Phase-A @-includes) unchanged. Adds mcp__tavily/ref/jina__* to the project/phase/ui researcher tools frontmatter (Balanced provider set) so install.js MCP mapping (C.2) has a consumer. Issue #657. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * test(#657): cover tavily/ref/jina MCP install handling + frontmatter parity guard (Phase C.2) Investigation: exa/firecrawl have no explicit per-runtime tool-mapping — every mcp__<server>__* except context7 rides the generic passthrough (Copilot lowercases; OpenCode/Cursor/Windsurf/Augment keep as-is; Gemini auto-discovers). tavily/ref/jina are handled identically, no install path broken. Added 12 copilot-install passthrough tests + a mcp-tool-inheritance parity guard (tavily co-declared with exa, jina with firecrawl, ref present across the 3 web researchers) so the MCP set can't drift. No io.github registry ids invented (none sourceable in-repo); documented as a follow-up. 488 tests green. Issue #657. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(#657): profiles as source of truth for researcher agents + drift-guard (Phase C.3) scripts/research-profiles.cjs declares each of the 7 researcher agents' identity + contract (name, description, color, tools, required @-includes, required gsd-tools seam calls, output-contract markers). scripts/gen-research-agents.cjs --check validates every committed agent against its profile; --write regenerates ONLY the frontmatter from profiles (body untouched) and is a verified no-op against the current agents (zero diff = fidelity). tests/research-agent-profiles.test.cjs is the DEFECT.GENERATIVE-FIX drift guard. Design note: profiles govern the generatable/contract surface rather than destructively regenerating the disparate operational prose bodies (those were deduped via @-includes in Phase A). scripts/ is not inventoried (no inventory change). Issue #657. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(#657): complete agent provider-dispatch + parity guard; align legitimacy field; validate profiles Adversarial-review findings: (HIGH) the seam-wired agents' Step-C dispatch only mapped 6 providers, so a planResearch result of jina/ref/perplexity/brave (reachable via the waterfall fallbacks) had no handling -> agent stall; completed both agents' dispatch to all 9 PROVIDER_WATERFALL ids + a catch-all, and added a parity test asserting agent dispatch stays in sync with research-provider PROVIDER_WATERFALL (DEFECT.GENERATIVE-FIX). (MEDIUM) phase-researcher package-legitimacy JSON example used 'package' but the module returns 'name' -> aligned. (LOW) gen-research-agents checkAgent now returns a clear failure for a malformed profile instead of throwing. +parity/validation tests (RED-first). Issue #657. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(#656): make classifyConfidence verification-evidence-driven (W3) Confidence conflated provider authority with claim verification — context7/ref stamped HIGH purely by provider identity, and the only verification lever was a self-set --verified flag. Split into two axes: provider authority (static) + verification evidence (code-computed). HIGH now requires ground-truth corroboration (legitimacyVerdict OK), independent of provider; authority alone caps at MEDIUM; SLOP caps at LOW; the self-reported --verified is demoted to a MEDIUM-only web lever. HIGH = corroborated-against-authoritative-source, not a correctness guarantee. Adds --legitimacy-verdict to the classify-confidence CLI; updates CONTEXT.md predicate + ADR-0656 (tier set unchanged, ADR-consistent). Addresses davesienkowski's W3 review on #664. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#656): bind classify-confidence verdict to code, closing CLI self-grading Adversarial review found the new --legitimacy-verdict flag was caller-supplied, so an agent could self-assert OK->HIGH without any real legitimacy check — reintroducing the exact self-grading hole W3 closes. Remove the free flag; the CLI now computes the verdict via checkPackages only when --package/--ecosystem is given (code-computed, not agent-asserted). Update the stale CLI test (context7 alone -> MEDIUM) and extend the property test to vary legitimacyVerdict. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(#717): re-base workflow size budget on bytes + document quality rationale (#719) * feat(#717): re-base workflow size budget on bytes + document quality rationale Re-base tests/workflow-size-budget.test.cjs from line counts to byte counts (matches Codex's 32,768-byte project_doc_max_bytes cap; deterministic, no tokenizer). Tier ceilings: XL=90000, LARGE=54000, DEFAULT=38000, GRACE=3000; discuss-phase target re-expressed as <30 KB. The #597 tighten-only ratchet and per-file budget semantics are preserved unchanged — only the unit swaps. byteCount() uses fs.statSync().size to match `wc -c` (includes trailing newline), deliberately not lineCount()'s newline-stripping. Document the context-rot / attention-budget QUALITY rationale (independent of prompt caching) in the test JSDoc and docs/ARCHITECTURE.md, plus the Goodhart caveat: the byte budget measures one file, so the real goal is bounded *loaded* context — eager @-imports game the proxy; legitimate extraction is lazy. Update CONTEXT.md RULESET.WORKFLOW_SIZE_BUDGET to bytes and remove a stale duplicate ruleset entry that still said "1800 lines". Defers the #3182 MVP-mode split (tracked separately): MVP is a cross-cutting concern woven through plan-phase/execute-phase, not a discrete extractable mode. Closes #717 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * docs(#717): add changeset fragment for byte-budget re-base Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * feat(#159): auto-use existing RESEARCH.md in /gsd:plan-phase --research-phase (#718) * feat(#159): auto-use existing RESEARCH.md in /gsd:plan-phase --research-phase When RESEARCH.md already exists in research-only mode and neither --research nor --view is passed, emit a one-line notice and exit cleanly instead of prompting update/view/skip. This matches the promptless auto-use of standard /gsd:plan-phase <N> (§5.1) and removes the §5.0/§5.1 inconsistency, making AI-agent and CLI invocations non-interactive in the common case. The two explicit-flag escape hatches (--research to refresh, --view to print) cover any deviation. Closes #159 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#159): point changeset fragment at PR #718 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * docs(#159): tighten research-phase reference register (Diataxis) Make the 'no modifier' research-phase entries descriptive rather than imperative and drop the trailing 'pass --research/--view' clauses, which duplicated the adjacent --research/--view documentation. Reference docs describe; the recovery flags are documented in their own entries. The emitted runtime notice in the workflow keeps naming the flags (in-band recovery), unchanged. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * chore: clean up clear-cut ESLint warnings (#732) (#734) Pay down pre-existing error→warn lint debt. Removes dead imports/vars, unused functions, redundant regex/string escapes, and stale eslint-disable directives; converts unused `catch (_e)` to optional catch binding (src/*.cts). No behavior change. Lint 345→125 warnings (0 errors); deferred categories (n/no-process-exit, test-sleeps, control-regex) tracked in #732 for follow-up. Full test suite green (0 failures); code-review verified all removals unused and all escape fixes semantics-preserving. Closes #732 Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * chore(lint): justify intentional no-control-regex (ANSI strip) + ratchet to error (#737) The 5 no-control-regex warnings are all the same intentional ANSI-color-strip pattern /\x1b\[[0-9;]*m/g across 5 test files. The \x1b (ESC) control char is the required leading byte of an ANSI SGR sequence, so matching it is the whole point of stripping color codes from captured CLI/console output. Add an inline eslint-disable-next-line with justification at each site (not a refactor — the control char is essential, not accidental), then flip no-control-regex from warn to error so the debt can't regrow. Refs #736 Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * chore(lint): refactor magic-sleep tests to async waits + ratchet rules to error (#735) Replace raw setTimeout/Atomics.wait synchronization sleeps in 4 test files with a shared async delay()/waitFor() poll-for-condition helper in tests/helpers.cjs, then flip local/no-magic-sleep-in-tests and no-restricted-syntax from warn to error so the debt can't regrow. - tests/helpers.cjs: add delay(ms) + waitFor(predicate, opts), exported - bug-1974: setTimeout backoff -> await delay() - config.test: drop Atomics.wait sleep(); async retry via await delay() - graphify: waitForBuildStatus/cleanupHookRepo async via await delay() - locking-bugs: 3 Atomics.wait poll loops -> await waitFor() - eslint.config.mjs: ratchet both rules warn -> error Refs #733 Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * fix(#704): exclude } and ) from Codex path-rewrite lookbehind (no literal $gsd-core in installs) (#710) * fix(#704): exclude } and ) from Codex path-rewrite lookbehind Shell variable expressions like \${VAR}/gsd-core/ and command-substitution paths like \$(cmd)/gsd-local-patches were being rewritten to \$gsd-core and \$gsd-local-patches respectively because the negative lookbehind in convertSlashCommandsToCodexSkillMentions did not include } or ). Add both characters to the lookbehind set: (?<![a-zA-Z0-9./})]) Also adds regression test: tests/bug-704-codex-launcher-path-corruption.test.cjs Closes #704 * chore: add changeset for #704 * test: use RUNTIME_ROOT_PATH in assertion to eliminate dead-code lint warning Replace the partial hard-coded fragment '}/gsd-core/bin/' with the existing RUNTIME_ROOT_PATH const so the assertion both compiles clean (no unused variable) and self-documents which canonical launcher path must survive Codex conversion intact (#704). Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> * chore: link changeset to PR #710 --------- Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com> * fix(#706): skip rescue of already-committed SUMMARY to avoid worktree cleanup merge_failed (#709) * fix(#706): skip rescueSummaryArtifacts when SUMMARY is already committed rescueSummaryArtifacts now probes `git cat-file -e HEAD:<path>` before copying a SUMMARY.md into the main checkout. When the file is already committed on the worktree branch, copying it as an untracked file causes `git merge --no-ff` to abort with "untracked working tree files would be overwritten by merge" — a permanent merge_failed cleanup-wave failure. Fail-closed on timeout: if cat-file is unreliable we skip rescue (the merge will surface the collision as it did before, which is recoverable). Adds 4 new test cases in worktree-safety.test.cjs covering: - committed SUMMARY skipped, merge succeeds (#706 regression case) - committed SUMMARY skipped even when timeout (fail-closed) - uncommitted SUMMARY still rescued (existing contract preserved) - rescue failure on ENOSPC still propagates (unchanged) Closes #706 Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> * chore: add changeset for #706 Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> * fix(#706): treat cat-file exit 128 as uncertain — skip rescue (fail-closed) The previous guard skipped rescue only when `exitCode === 0` (committed) or `timedOut`. Any other non-zero exit, including `128` (fatal git error: corrupt object store, unborn HEAD, missing repo), fell through and PROCEEDED with rescue — potentially re-creating the #706 untracked-file merge collision. Fix: rescue ONLY when `exitCode === 1` (cat-file definitively reports the object absent). All other outcomes — 0 (committed), 128 (fatal), null/SIGTERM (timeout), or any other code — are treated as "uncertain → skip rescue". Also corrects the JSDoc bullet that still referenced `git ls-files --error-unmatch` (the old mechanism); updated to `git cat-file -e HEAD:<relPath>`. Regression test added: asserts rescue is SKIPPED when cat-file returns exit 128, leaving the merge to surface the issue safely rather than silently copying an already-committed file. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> * chore: link changeset to PR #709 --------- Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com> * refactor(scripts): replace process.exit() with ExitError + runMain handler (#739) (#740) Part 1 of 2 of the n/no-process-exit cleanup (umbrella #738): convert every process.exit() call in standalone scripts/** CLIs to the rule-compliant pattern. - New shared helper scripts/lib/cli-exit.cjs: ExitError(code,message) + runMain() which translates a thrown ExitError / returned number into process.exitCode (never process.exit()), flushing output and still firing process.on('exit'). - main()-based entrypoints: throw new ExitError(code) for errors, return <code> for verdicts; invoked via runMain(main). Child exit codes preserved via return. - top-level-only scripts: imperative body extracted into main() so mid-flow aborts (throw ExitError) actually halt; pure consts/helpers stay at module scope. - diff-touches-shipped-paths.cjs: stdin event handling restructured to an async read so the whole flow runs under runMain; uncaughtException/unhandledRejection nets replaced by an in-band catch that preserves EXIT_ERROR=2. Exit codes verified unchanged for every converted script (success/error/help and the 0/1/2 semantic codes in diff-touches). Rule stays warn here; flipped to error in part 2 (#738) once gsd-core/bin/** is also clean. Refs #739 Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * refactor(bin): replace process.exit() in CLI entrypoints + ratchet rule to error (#738) (#741) Part 2 of 2 of the n/no-process-exit cleanup (completes umbrella #738; part 1 was #739/scripts). Converts the 20 flagged process.exit() calls in the three hand-written gsd-core/bin CLI entrypoints and flips n/no-process-exit to error. - New src/cli-exit.cts -> gsd-core/bin/lib/cli-exit.cjs (ExitError + runMain), the gsd-core-side equivalent of scripts/lib/cli-exit.cjs; registered in .gitignore, eslint ignores, and the inventory manifest like its siblings. - gsd-tools.cjs: 13 apply-prompt-budget exits -> throw ExitError; main()->runMain. - verify-reapply-patches.cjs: 6 exits -> throw ExitError / return verdict; runMain. - check-latest-version.cjs: 1 exit -> return verdict; runMain. - eslint.config.mjs: n/no-process-exit warn -> error. Scope note: the gsd-core/bin/lib/*.cjs modules (core, state, profile-pipeline, roadmap-command-router, adr-parser, ui-safety-gate) are tsc-generated and eslint-ignored (ADR-457), so their process.exit calls were never flagged and are intentionally left untouched. Only the linted hand-written entrypoints are in scope. Exit codes verified unchanged for all three entrypoints. Closes #738 Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * refactor(#720): lazy-load MVP-only reference bodies on non-MVP runs (#746) * refactor(#720): lazy-load MVP-only reference bodies (eager @-import → gated Read) Convert eager @-imports of MVP-only reference bodies into lazy "Read" instructions gated on MVP_MODE / WALKING_SKELETON / MVP+TDD, so non-MVP planning/execution runs no longer pull MVP guidance into context. Covers both the workflow files and the planner/executor agent definitions (the dominant context-cost path): - workflows/plan-phase.md: planner-mvp-mode.md + skeleton-template.md (L146/936/937/941) - workflows/execute-phase.md: execute-mvp-tdd.md halt-report ref, now gated on gate-trip (L191) - agents/gsd-planner.md: planner-mvp-mode.md, user-story-template.md, skeleton-template.md - agents/gsd-executor.md: execute-mvp-tdd.md The dedicated always-MVP mvp-phase workflow keeps its eager imports (intentional). Behaviour is unchanged; non-MVP runs simply carry less loaded context. Adds a regression guard mirroring the discuss-phase lazy-load test, and documents the conformance in docs/ARCHITECTURE.md. Refs #720 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * docs(#720): add changeset fragment (pr #746) Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * refactor(#712): replace Codex slash-command denylist lookbehind with positive-boundary match (#747) * refactor(#712): replace Codex slash-command denylist lookbehind with positive-boundary match The hyphen-style /gsd-<cmd> -> $gsd-<cmd> conversion in convertSlashCommandsToCodexSkillMentions used a negative-lookbehind DENYLIST enumerating characters that must NOT precede a real mention. #637 -> #704 showed this is an unbounded treadmill: each new unanticipated preceding char (/, ., word chars, then }, )) leaked the same path-corruption bug class, and a backtick-wrapped path (`/gsd-core/workflows/update.md`) still leaked through. Replace it with a POSITIVE two-boundary definition of a mention: 1. Left: opens at start-of-string, whitespace, or an inline-prose delimiter (backtick/quote/paren/bracket). 2. Right: the command token is not followed by a path separator `/` (a path continues, a command does not). The (?![a-z0-9/-]) lookahead also blocks regex backtracking to a shorter command. This closes the whole class by construction (no preceding-char denylist to maintain) and fixes the backtick-wrapped-path corruption the #704 test documented as a pre-existing gap, while preserving conversion of legitimate backtick-wrapped mentions (e.g. CONTEXT.md's `/gsd-execute-phase` lists). The colon-style /gsd: replace is intentionally left unguarded (it never appears as a filesystem path segment) and is annotated as such. Tests assert the regex directly (function now exported) across a convert/ don't-convert matrix plus one end-to-end pipeline assertion for the headline backtick-path case. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#712): add changeset fragment for PR #747 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * fix(#730): scope current-milestone Phase Details section in roadmap parser (#748) `extractCurrentMilestone()` scoped the current-milestone window to its `## Phases` checklist subsection and terminated at the milestone's own `## Milestone … (Phase Details)` heading, so the `### Phase N:` detail headers fell outside scope. Every parser-backed command — `init.phase-op` (and thus `/gsd:discuss-phase`, `/gsd:plan-phase`), `state`, `roadmap list`, and `validate health` (W006) — therefore could not resolve phases of any milestone after the first until a `.planning/phases/` directory already existed, blocking discuss/plan. The parser now additionally includes the current milestone's `(Phase Details)` section in scope, located via the already-computed version matches and anchored (boundary-aware) to the selected milestone's version token so sibling sub-milestones sharing a version prefix do not cross-pollinate. The existing heading selection and primary window are unchanged. Adds tests/bug-730-milestone-phase-details-scope.test.cjs covering the two-milestone reproduction, first-milestone non-regression, direct getRoadmapPhaseInternal resolution, validate-health W006 visibility, a three-milestone roadmap, and the closed-sibling sub-milestone case. Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * fix(#683): auto-degrade phase execution to sequential on worktree base mismatch (#749) * fix(#683): auto-degrade phase execution to sequential on worktree base mismatch Claude Code forks worktree-isolated executors off the repository default branch (origin/HEAD), not the orchestrator's HEAD. Running /gsd-execute-phase on a branch diverged from the default (unmerged milestone/feature branch) left every executor without the phase's plan files and tripped the worktree-branch-check guard with `exit 42` — 100% reproducible, all OSes. - New module src/worktree-base-ref.cts: HEAD-vs-fork-base drift detection (origin/HEAD with symbolic-ref fallback) and no-clobber worktree.baseRef management, exposed as `worktree base-check` / `worktree set-baseref`. - execute-phase.md: pre-dispatch, for Claude Code with worktrees enabled, auto-degrades the run to sequential on the main tree when a base mismatch is detected, recommending worktree.baseRef:"head". The exit-42 guard stays as a backstop. - Installer: fresh local Claude installs set worktree.baseRef:"head" in .claude/settings.local.json (no-clobber, respecting an explicit shared settings.json value); upgrades print an opt-in notice pointing at `gsd-tools worktree set-baseref`. - Docs: how-to guide, CLI/config reference, planning-config cross-ref. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#683): auto-apply worktree.baseRef on upgrade; gate fresh+upgrade on use_worktrees Per maintainer direction: on a local Claude Code UPGRADE, set worktree.baseRef:"head" automatically (no opt-in notice) when the project's workflow.use_worktrees is enabled, instead of merely printing a remediation notice. For consistency the FRESH path is now gated the same way: both paths compute worktrees-enabled once (bounded walk-up read of .planning/config.json, default enabled unless workflow.use_worktrees === false) and apply the no-clobber baseRef only when enabled — never overwriting an explicit value in settings.local.json or a shared settings.json. gsd-tools worktree set-baseref remains for manual use. Docs + changeset updated; tests hardened (file-exists assertions, fresh+disabled case, upgrade idempotency). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#683): measure workflow byte-budget on LF, fixing Windows-only CI failure The workflow-size-budget test failed only on Windows: git checks out the .md files as CRLF (no eol=lf in .gitattributes) and byteCount used fs.statSync().size (raw on-disk bytes), counting an extra \r per line. That inflated execute-phase.md — the XL high-water-mark file pinned near its ceiling by the tighten-only ratchet — from 88492 LF bytes to ~90245 on Windows, over the 90000 XL ceiling, while passing on the LF-checkout Mac/Linux runners. The ceilings are explicitly "calibrated against raw `wc -c`" on an LF checkout, so the measurement should be LF-based on every platform. byteCount now reads the file and counts Buffer.byteLength after stripping CR, making the budget platform-independent (a no-op on LF checkouts; verified statSync === normalized for all 88 workflow files). No ceilings changed. Added a regression test asserting CRLF and LF content of the same file count identically. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#683): make worktree-base-ref test path mocks Windows-safe (path.join) tests/worktree-base-ref.test.cjs keyed its injected readFile/writeFile mocks (and a few expected `file` values) with forward-slash template literals like `${claudeDir}/settings.local.json`. The module composes those paths with path.join(), which emits backslashes on Windows, so the mock keys never matched the module's lookup → readFile returned null → resolveEffectiveBaseRef / cmdWorktreeBaseCheck / cmdWorktreeSetBaseRef (and the JSONC variants) failed on the Windows full-test runner only (they passed on Mac/Linux, and the install tests passed because they use the real filesystem). The module is correct; only the test fixtures hardcoded '/'. All mock keys and path assertions now use path.join(base, ...) mirroring the module, so they match on every platform (no-op on POSIX). 19 path references across 16 lines. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * feat(#703): add --granularity override flag to /gsd:plan-phase (#750) * feat(#703): add --granularity override flag to /gsd:plan-phase Add a `--granularity <coarse|standard|fine>` flag to /gsd:plan-phase that overrides the configured planning granularity for a single invocation. The override is a new highest-priority tier above the existing precedence chain (granularities[phaseType] -> granularity -> planning.granularity -> 'standard') in resolveGranularityInternal; when the flag is absent, resolution is byte-for-byte unchanged. cmdInitPlanPhase now resolves with phaseType 'planning' so granularities.planning participates, and emits the resolved value in the init JSON, which the plan-phase workflow forwards to the planner prompt. Invalid values are rejected at the CLI boundary via a shared assertValidGranularityOverride helper. Closes #703 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#703): set changeset pr to 750 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * fix(#751): recognise config-set prototype-pollution guard in CodeQL + test dynamic-key vectors (#752) CodeQL alert #26 (js/prototype-pollution-utility) kept firing on setConfigValue because its dataflow does not trace the #663 Set-based, pre-loop keys.some(...) forbidden-key check as a sanitising barrier on the write site. - src/config.cts: replace the Set + pre-loop check with inline literal comparisons (key === '__proto__' || 'prototype' || 'constructor') on the exact key used to index `current`, immediately before each write (intermediate keys in the descent loop, plus the final key). Same forbidden set, same error message and ERROR_REASON.CONFIG_PARSE_FAILED — behaviour unchanged from #663, but the barrier is now CodeQL-recognised. - tests/config.test.cjs: add regression tests for schema-valid dynamic-prefix keys (agent_skills.__proto__, agent_skills.constructor, agent_skills.prototype, features.__proto__, review.models.constructor) that pass the isValidConfigKey schema gate and reach the guard. Each asserts the guard's own message fires (not the schema gate's "Unknown config key") and Object.prototype is not polluted. The prior #663 tests never reached the guard — their keys are rejected by the schema gate first — so the guard's real attack surface was untested. Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * feat(#25): scope gsd-verifier Step 7b to enumerate-or-single-test; forbid full-suite re-runs (#753) * feat(#25): scope gsd-verifier Step 7b to enumerate-or-single-test; forbid full-suite re-runs Step 7b's lone test example (`npm test -- --grep "$PHASE_TEST_PATTERN"`) is mocha/vitest/jest-specific, where `--grep` filters which tests *execute*. Models generalized it to `cargo test --workspace 2>&1 | grep X` (runs the whole suite, filters only *output*) and repeated it once per must-have, adding minutes per verification with no new evidence after the first run. Replace the example with language-agnostic guidance: prove a test EXISTS via enumeration (`cargo test -- --list` / `pytest --collect-only` / `npx vitest list` / `go test -list`), and prove it PASSES via a single named test (`cargo test <name> -- --exact` / `pytest -k` / `npx vitest run -t`). Add a Spot-check constraint forbidding more than one full-suite run per verification or piping a full run through grep per must-have, while still permitting one saved run + grep when a full run is genuinely required. docs/AGENTS.md gains a one-line Key-behaviors note, and a new test asserts the Step 7b content. Scoped per the maintainer decision on the issue: folded into Step 7b (no new top-level Step 7a) with no VERIFICATION.md label changes. Closes #25 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#25): add Changed changeset fragment for PR #753 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * feat(#52): add agent_skills_security.trusted_global_roots allowlist for global skills (#754) * feat(#52): add agent_skills_security.trusted_global_roots allowlist Opt-in allowlist so a global: agent skill whose SKILL.md realpath resolves outside the default global skills base (e.g. ~/.claude/skills) is accepted when its real target lies under a user-declared trusted root. Default [] is byte-identical to prior behavior; the symlink-escape guard is preserved and simply re-applied against each declared root. - src/security.cts: loadTrustedGlobalRoots — tilde-expand (~ and ~/), reject project-relative and dangerously broad roots (filesystem/UNC root, homedir), realpath-canonicalize each root every run and drop non-existent ones. - src/init.cts: on base-check failure the guard consults the trusted roots (hoisted out of the loop); emits a stderr NOTE when a skill is accepted via a trusted root so the widened boundary is visible. - src/core.cts: thread agent_skills_security through loadConfig. - config-schema.manifest.json: allow the new key path. - docs/CONFIGURATION.md: document the option and its security model. - tests/agent-skills.test.cjs: unit + end-to-end CLI coverage (regression, feature, negative, broad-root hardening, stderr NOTE). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * docs(#52): add changeset fragment for trusted_global_roots (#754) Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * refactor(#651): consolidate verification-status routing into one queryable seam (#755) * refactor(#651): consolidate verification-status routing into one queryable seam The passed/gaps_found/human_needed verification status was re-encoded as bare strings across three prose surfaces (gsd-verifier emits, execute-phase routes, ship gates), each independently deciding the per-status next action with no parity coupling — the DEFECT.GENERATIVE-FIX class. Give the enum one home: src/verification.cts (-> bin/lib/verification.cjs) exposing `gsd_run query verification.status <phaseDir>` returning a typed {status, next_action, next_command}. ship.md and execute-phase.md now consume the query instead of re-deriving the routing in prose; gsd-verifier.md points at the shared vocabulary as the single emitter (values unchanged). Also fixes the latent broad-grep status misread (DEFECT.FRONTMATTER-SCALAR- BROAD-GREP): execute-phase.md read `grep "^status:"` over the whole report, so a body `status:` line could misroute a valid phase. Extraction is now frontmatter-scoped in one place. A parity test fails if a verifier status gains no route. Lands the two CONTEXT.md DEFECT entries captured on the issue. Closes #651 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#651): set changeset pr to 755 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * fix(#758): trigger draft-PR auto-close on pull_request_target (#760) Bare `pull_request` hands fork PRs a read-only GITHUB_TOKEN, so the close/comment API calls 403 and a first-time/external contributor's draft PR survives — bypassing the auto-close for exactly the population the job targets. Switch to `pull_request_target`, which runs in the base-repo context with a write-capable token even for fork PRs. Safe because the job never checks out or executes PR-supplied code; it only reads event metadata and calls the GitHub API. The minimal `permissions: pull-requests: write` block still constrains the token. Add a regression guard in tests/workflow-maintainer-skip.test.cjs asserting the workflow triggers on pull_request_target and not bare pull_request. Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * docs(#58): add ADR for Runtime Install Policy Module boundary (#762) Record the Runtime Install Policy Module decision and ownership boundary: install policy projects a pure, typed install plan by composing artifact placements (ADR-3660) and command text (ADR-0009) plus per-runtime config intentions, with no filesystem IO; runtime adapters consume the plan and execute concrete file mutations and format-specific config rendering. Explicitly records what stays outside the policy module (TOML/JSON/Markdown serialization, merge semantics, filesystem effects). Adds the ADR index row in docs/adr/README.md and a glossary entry in CONTEXT.md. Leads the installer-refactor chain (#58 -> #60 -> #56). Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * feat(#759): non-destructive CHANGELOG preview in the rc release job (#763) The rc action publishes a release candidate to @next for testing but never surfaces the curated CHANGELOG section for the version under test — render only runs destructively at finalize (#715), so there was no safe way to preview the upcoming notes during the RC window. Add a --preview mode to scripts/changeset/cli.cjs cmdRender: it renders the dated release section to stdout via the existing renderChangelog/ serializeChangelog path (with priorChangelog: null, so only the new section is emitted), reuses the shared injectEmptyPlaceholder helper for zero-fragment releases, and returns WITHOUT writing CHANGELOG.md or deleting any .changeset fragment. Wire a "Preview CHANGELOG" step into the rc job that renders to a file (standalone command, so a malformed fragment fails the step) and cats it to the job summary and log. Closes #759 Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * feat(#761): add scheduled base-context sweep to close SHA-branch-evading draft PRs (#765) close-draft-prs.yml (on pull_request_target after #760) cannot close fork draft PRs whose head branch name looks like a Git SHA — GitHub never dispatches pull_request_target for such branches, and a pull_request run from a fork gets a read-only token. So a draft PR on a SHA-named fork branch evades the auto-close. Add close-draft-prs-sweep.yml: a schedule (every 6h) + workflow_dispatch sweep running in base-repo context with pull-requests: write that paginates open PRs, filters to non-OWNER/MEMBER/COLLABORATOR drafts, and closes + comments them with the identical policy/message as the event-driven workflow. Re-fetches each candidate before mutating (TOCTOU guard), closes before commenting so enforcement is never gated on the explanatory comment, and core.setFailed on partial failures. The per-PR workflow remains the fast path; this is the safety net for the documented residual bypass. Extends tests/workflow-maintainer-skip.test.cjs with structural guards locking the triggers, write permission, maintainer carve-out, pagination, and message. Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * fix discord release changelog announcements * test(#339): regression guard for gsd-sdk refs in runtime surfaces (#691) * test(#339): add regression guard for gsd-sdk refs in runtime surfaces Lock in the already-clean runtime surface so a retired `gsd-sdk`/`GSD_SDK` reference cannot creep back into a shipped prompt or hook. Scans gsd-core/workflows, gsd-core/references, commands/gsd, agents, and hooks (excluding the gitignored dist/ build artifact). Complements gsd-tools-path-refs.test.cjs, which only catches the `gsd-sdk query` binary form; this catches any runtime reference. A second test guards against an empty sweep so a future dir rename can't silently turn the guard into a no-op. Intentionally does NOT touch bin/install.js (live stale-package-detection mechanics per #339 triage) or CI/lint scripts (legitimate stale detection). Refs #339 * test(#339): split file content on /\r?\n/ for Windows CRLF parity The windows-test-parity-guard lint requires test files that readFileSync + split to use /\r?\n/, not '\n', so CRLF files don't leave a trailing \r. New test files are not in the PR #3649 allowlist. * test(#339): cover .sh/.json runtime files in workflows surface Address #691 review: the gsd-core/workflows surface scanned only .md, silently skipping two deployed runtime files — _runtime-launcher.snippet.sh (synced into every hook) and discuss-phase/templates/checkpoint.json. Add .sh/.json so the guard covers all 290 deployed runtime files (was 288/290), not just the .md subset. * test(#339): cover templates/contexts surfaces + per-ext empty-sweep guard Address PR #691 review (trek-e): - Add gsd-core/templates and gsd-core/contexts to RUNTIME_SURFACES — both are deep-copied by the installer and runtime-loaded via @~/.claude/gsd-core/templates/*.md anchors, so a reintroduced gsd-sdk ref there would have slipped past the guard. (major) - Reword the bin/install.js exclusion rationale: it has zero gsd-sdk refs today (subsystem removed in #515, shim retired in #522); the real reason it is excluded is that it is installer code, not a deployed prompt/hook surface. (minor) - Make the empty-sweep guard assert coverage per configured extension, not per surface — .md files alone kept gsd-core/workflows green even if .sh/.json were dropped, silently un-covering _runtime-launcher.snippet.sh and discuss-phase/templates/*.json. (low) --------- Co-authored-by: Tom Boucher <trekkie@nomorestars.com> * refactor(#60): make runtime config adapter registry explicit (#795) * refactor(#60): make runtime config adapter registry explicit Replace scattered inline `runtime === '...'` config-mutation branching in bin/install.js with an explicit, typed adapter registry. The new src/runtime-config-adapter-registry.cts maps each of the 15 supported runtimes to a config intent { installSurface, writesSharedSettings, finishPermissionWriter }; install()/finishInstall() dispatch by resolved intent instead of runtime-name checks (cursor/windsurf/trae collapse to one profile-marker-only branch). Behavior-preserving: the same config files are written for the same runtimes (opencode still writes both settings.json and its permissions; kilo writes only its permissions; codex minimal-mode and opencode GSD_TEST_MODE guards unchanged). Unknown runtimes fail loudly via TypeError, with an Object.hasOwn barrier so prototype-chain keys (__proto__/constructor) also throw rather than returning a bogus intent. Leads the installer-refactor chain (#58 -> #60 -> #56), building on ADR-58. Closes #60 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#60): add changeset for runtime config adapter registry Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * docs(#60): register Runtime Config Adapter Registry in CONTEXT.md glossary Per docs/contributor-standards.md, every new Module/seam must get a `### <Name>` entry under the domain glossary. Adds the entry for the runtime-config-adapter-registry seam introduced in this PR (interface, policy boundary, source file, ADR-58 / #60 cross-references). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * feat(#764): skip cross-platform test matrix for docs-only and inert-CI PRs (#798) test.yml had no paths filter and the ci-test-scope classifier treated docs/ and every .github/workflows/* as code_changed, so documentation edits and product-irrelevant automation tweaks still spun up the full Linux/Windows/macOS matrix. Narrow the heavy matrix to changes that can actually affect the product or the test pipeline. - ci-test-scope.cjs: drop docs/ from code_changed (docs-only -> full skip; the required-tests fan-in still reports green). Add src/ to code_changed (it was missing -> a source-only PR previously skipped all tests). Add INERT_WORKFLOWS allowlist + isInertCi() + an "inert CI" rule, and a product_changed output that gates the heavy test/coverage jobs. Fail-safe: any workflow not on the inert allowlist defaults to the full matrix. A module-load assertion throws if a PROTECTED_WORKFLOWS entry (test/install-smoke/mutation/security-scan/release) is ever added to the inert set, so a weakening edit fails CI loudly. - test.yml: keep the static 3-lane matrix (so the H1 shell-policy linter can still statically verify the Windows lane), gate test/coverage on product_changed, add a lightweight ubuntu-only test-inert job, and branch the required-tests fan-in on product_changed. - docs-required.yml: run docs-parity-live-registry (gated on docs/ changes) so pure-docs PRs still catch live-registry drift without the matrix. - tests: cover docs-only, inert-only, src/, pipeline, unknown-workflow fail-safe, mixed escalation, the code_changed=false -> no-lanes invariant, and protected- workflow tamper-evidence. Closes #764 Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * feat(#766): distribute gsd-core as a native Claude Code plugin (#797) * feat(#766): distribute gsd-core as a native Claude Code plugin Add an additive .claude-plugin/plugin.json manifest plus hooks/hooks.json so gsd-core can be installed as a first-class Claude Code plugin (marketplace or zero-friction @skills-dir), with /gsd-core: namespaced commands and lifecycle management — alongside the unchanged npm/file-copy installer. - .claude-plugin/plugin.json: validated with 'claude plugin validate --strict' - hooks/hooks.json: mirrors the installer's always-on Claude hook wiring via ${CLAUDE_PLUGIN_ROOT} - package.json: ship .claude-plugin in the npm tarball - tests/issue-766-plugin-manifest.test.cjs: manifest + always-on-hook-contract drift guards - docs: install-on-your-runtime.md + FEATURES.md Closes #766 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * docs(#766): add ADR-766 + glossary entry for Claude Code Plugin Manifest Module Record the plugin manifest as the Seam projecting gsd-core's artifact surfaces onto the Claude Code plugin contract (sibling of the Runtime Artifact Layout Module, ADR-3660), with the defined kind->field mapping and the always-on hook projection rule. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * refactor(#56): retire legacy runtime directory helpers into runtime-homes projection (#802) * refactor(#56): retire legacy runtime directory helpers into runtime-homes projection Consolidate per-runtime global config-dir resolution onto the single canonical projection runtime-homes:getGlobalConfigDir. Extend it with the explicitDir override (CLI --config-dir) and the opencode/kilo OPENCODE_CONFIG/KILO_CONFIG file-path precedence the installer helpers had, making it byte-for-behavior equivalent to the old getGlobalDir across all 15 install runtimes. Delete bin/install.js's getGlobalDir/getOpencodeGlobalDir/getKiloGlobalDir (and the orphaned local expandTilde), repoint all 9 call-sites, and remove getGlobalDir from module.exports (net -242 lines in the installer). Migrate the 5 test importers to the canonical projection; harden default/XDG assertions against ambient *_CONFIG env vars. getAgentsDir now respects OPENCODE_CONFIG/KILO_CONFIG consistently with the installer (intentional convergence). Update CONTEXT.md Installer Module entry. Completes the installer-refactor chain #58 -> #60 -> #56. Closes #56 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#56): add changeset for runtime directory helper retirement Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * feat(#786): elevate GitHub Copilot installer — lifecycle hook + AGENTS.md (#804) * feat(#786): elevate Copilot installer with lifecycle hook + AGENTS.md Emit a self-contained sessionStart hook config (.github/hooks/gsd-session.json local, ~/.copilot/hooks/gsd-session.json global) and write AGENTS.md at the repo root (Copilot CLI reads it as primary instructions) alongside copilot-instructions.md. The hook is an inline `command` hook (no separate hook script), so it cannot dangle. Uninstall removes both and preserves user content. Verified against GitHub Copilot CLI primary docs: hooks-configuration (camelCase events, version+hooks shape, inline bash/powershell command hooks) and add-custom-instructions (AGENTS.md read at repo root as primary instructions). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#786): set changeset pr number to 804 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * fix(#783): resolve Kilo global skills base to ~/.kilo/skills (#806) * fix(#783): resolve Kilo global skills base to ~/.kilo/skills getGlobalSkillsBase('kilo') returned ~/.config/kilo/skills (the XDG config dir), but Kilo Code discovers global skills from ~/.kilo/skills/ (the .kilo dir in HOME), independent of the kilo.jsonc config dir. Add a HOME-relative special case so the resolver matches Kilo's actual discovery path. The config dir (~/.config/kilo) and the installer's command/ path are correct and unchanged. This corrects the path used by doctor/status and agent-skills-block resolution; the installer writes commands (not skills) for Kilo, so no files were being written to the wrong location. Closes #783 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#783): set changeset pr to 806 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * feat(#785): write .cursor/commands/ Cursor 1.6 slash-command surface (#805) * feat(#785): write .cursor/commands/ as Cursor 1.6 slash-command surface Cursor 1.6 (released 2025-09-12) introduced plain-markdown slash commands in `.cursor/commands/<name>.md` — no frontmatter, invocable via `/` in the Agent input. GSD previously emitted only `~/.cursor/skills/` for Cursor. This PR wires a second artifact kind for `cursor` in `runtime-artifact-layout.cts`: `convertedCommandsKind('commands', 'gsd-', 'convertClaudeCommandToCursorCommand', configDir)`. The new kind applies the same `convertClaudeToCursorMarkdown` transforms (tool renames, brand substitution, slash-command normalisation) and then strips YAML frontmatter so the output is plain prose. Skills output is unchanged. `stageCommandsForRuntimeFlat` in `install-profiles.cts` stages each source `.md` as a flat `<stem>.md` in a temp dir; the existing `_copyStaged` commands path then prefixes and copies to `<configDir>/commands/`. `.cursor/mcp.json` is explicitly OUT OF SCOPE: GSD ships no MCP server; the `mcpServers` schema cannot be usefully populated by the installer. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> * refactor(#785): address review nit --------- Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com> * feat(#787): elevate Cline — .clinerules/ dir form, PreToolUse hook, AGENTS.md (#803) * feat(#787): elevate Cline — .clinerules/ dir form, PreToolUse hook, AGENTS.md Migrate the installer's Cline output from a single-file .clinerules to the .clinerules/ directory form (.clinerules/gsd.md), which is the prerequisite for Cline's v3.36 hooks (a path cannot be both a file and a directory). Add a .clinerules/hooks/PreToolUse lifecycle hook implementing Cline's JSON stdin -> {cancel,errorMessage,contextModification} protocol; it guards .planning/ artifacts and fails open. On global installs, merge GSD instructions into the cross-tool ~/.agents/AGENTS.md target (marker-delimited, merge-safe). A legacy single-file .clinerules is migrated in place; --uninstall removes the new artifacts and strips the AGENTS.md GSD block. Also fixes the uninstall targetDir for Cline local installs (it pointed at ./.cline instead of the project root) and re-runs writeManifest after the Cline artifacts are written so they are hash-tracked. Self-contained: implemented independently of the #782 Cline skills work. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#787): address review findings - Scope PreToolUse hook path-walk to PATH_KEY fields only (eliminates false positive when doc body content mentions .planning/) - Use lstatSync + isSymbolicLink() for migration guard so GSD never writes through a user's symlinked .clinerules into an external directory - Add regression tests for both cases Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> * chore(#787): set changeset pr: 803 Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * fix(#812): honor COPILOT_HOME in Copilot global config-dir resolution (#814) * fix(#812): honor COPILOT_HOME in Copilot global config-dir resolution getGlobalConfigDir('copilot') resolved the global config directory using only --config-dir > COPILOT_CONFIG_DIR > ~/.copilot, ignoring the COPILOT_HOME env var. Per GitHub's Copilot CLI docs, COPILOT_HOME overrides the default ~/.copilot location (and user-level hooks are read from $COPILOT_HOME/hooks/), so a global --copilot install wrote all artifacts (skills, agents, copilot-instructions.md, the gsd-session.json hook) to ~/.copilot even when the user relocated their Copilot home, making them undiscoverable by Copilot CLI. Mirror the codex/CODEX_HOME branch: precedence is now --config-dir > COPILOT_CONFIG_DIR > COPILOT_HOME > ~/.copilot. Uninstall uses the same resolver, so it stays symmetric. Also: document COPILOT_HOME in the installer --help notes, the USER-GUIDE env-var table, and the installer-migrations Copilot row; and clear COPILOT_HOME in the two default-path test suites so they stay hermetic now that the resolver honors it. Closes #812 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#812): add changeset for PR #814 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * feat(#788): expand Qwen Code hook-event coverage (#807) * feat(#788): expand Qwen Code hook-event coverage to 4 new events Register SubagentStop, Stop, PreCompact (gsd-context-monitor.js) and UserPromptSubmit (gsd-prompt-guard.js) in the Qwen Code installer. Guard is isQwen-only — Claude Code and all other runtimes are unchanged. Uninstall loop extended to include the 4 new event names. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> * fix(#788): reconcile to 3 Qwen-only events — defer UserPromptSubmit gsd-prompt-guard exits unless tool_name is Write|Edit (PreToolUse payload shape); UserPromptSubmit carries raw user-prompt text with no tool_name field, so wiring it would be a silent no-op. Deferred to a follow-on issue. Artifacts made consistent: - bin/install.js: drop UserPromptSubmit registration block; uninstall loop drops UPS from event list - .changeset/788-qwen-hook-events.md: corrected to 3 events + rationale - docs/how-to/install-on-your-runtime.md: remove UPS row from hook table - tests/enh-788-qwen-hook-events.test.cjs: assert UPS NOT registered; fix idempotency suite to persist settings between installs; drop UPS-specific assertions Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> * chore(#788): update changeset PR number to #807 Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> * test(#788): prune stale install-bucket allowlist entry for enh-788 test --------- Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com> * enhancement(#782): emit gsd skills to ~/.cline/skills for Cline >= v3.48 (#809) Cline added a global skills system (~/.cline/skills/<name>/SKILL.md) in v3.48.0, but gsd treated Cline as rules-only and emitted zero skills (getGlobalSkillsBase('cline')=null, empty artifact kinds). This makes gsd emit skills for Cline at global scope, alongside the existing .clinerules. - runtime-homes: getGlobalSkillsBase('cline') -> ~/.cline/skills (was null) - runtime-artifact-layout: cline emits a skills kind for GLOBAL scope only (local stays .clinerules-only), mirroring claude's scope dispatch - install.js: convertClaudeCommandToClineSkill emits name+description-only SKILL.md frontmatter (Cline/agentskills.io spec; no Claude-specific allowed-tools/argument-hint/agent), hyphen-normalized + .cline/-rewritten body; global cline routed through the skills path while .clinerules is still written; _applyRuntimeRewrites cline case handles custom CLINE_CONFIG_DIR; convertClaudeToCliineMarkdown also rewrites bare ~/.claude and CLAUDE_CONFIG_DIR - docs: install-on-your-runtime.md documents Cline global skills vs local rules - tests: converter (name+description-only), global emission, skills+.clinerules coexistence, scope-aware layout, custom-dir paths, idempotency Closes #782 Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * feat(#790): emit Augment slash commands (~/.augment/commands/) (#808) Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com> * enh(#784): emit native skills for OpenCode + Kilo runtimes (#810) * feat(#784): emit native skills for OpenCode + Kilo runtimes OpenCode and Kilo share a config schema and both discover on-demand skills from skills/<name>/SKILL.md. The installer previously emitted only flat commands (command/) and file-based agents (agents/) for these runtimes. Add a shared OpenCode-family skill writer that stages each GSD command as a spec-compliant SKILL.md (name matching the directory, description 1-1024 chars), wired through the runtime artifact layout so uninstall cleans skills/ automatically. Skills respect the active install profile. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#784): correct skill body paths + preserve user dev-preferences Address adversarial-review findings: - Add opencode/kilo cases to _applyRuntimeRewrites so staged SKILL.md bodies are re-pointed from the converter's hardcoded default config dir to the actual install target (fixes --local / --config-dir installs; commands/agents already did this by applying pathPrefix pre-conversion). - Preserve user-owned skills/gsd-dev-preferences across reinstall in installOpencodeFamilySkills (snapshot+restore around the gsd-* prune), matching installRuntimeArtifacts. - Export installOpencodeFamilySkills and add regression tests. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#784): guarantee command/skill body parity, fix kilo-alt double-rewrite Follow-up adversarial-review found the post-conversion path rewrite could double-rewrite custom Kilo dirs (kilo -> kilo-alt -> kilo-alt-alt) because the kilo pathPrefix is a $HOME (non-absolute) superset of the hardcoded default base. Restructure so OpenCode/Kilo skills mirror copyFlattenedCommands exactly: stage raw commands, apply pathPrefix BEFORE conversion via a new shared applyOpencodeFamilyPathPrefix() helper (now used by both the command and skill writers), then convert. This guarantees byte-for-byte command/ skill body parity for global, --local, and --config-dir installs and removes the prefix-overlap hazard. Drop the fragile _applyRuntimeRewrites opencode/ kilo case. Strengthen the path regression test. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * refactor(#784): derive opencode/kilo skills from the same staged command set Pass the installer's _stageSkills() output directly to installOpencodeFamilySkills instead of re-staging via the layout, so the command/ and skills/ surfaces always cover the identical profile-resolved set — including the --minimal/--core-only alias path, which stages differently from a plain --profile=core. Verified: minimal install now emits 8 commands and 8 skills. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#784): set changeset PR number to 810 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * test(#784): fully escape backslashes in test helper (CodeQL js/incomplete-string-escaping) Replace the dot-only escape `replace(/[.]/g, '\\.')` with a complete regex-escape pattern `replace(/[\\.*+?^${}()|[\]]/g, '\\$&')` so all regex metacharacters (including backslash itself) in `defaultBase` are safely escaped before interpolation into `new RegExp(...)`. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * fix(#813): apply per-runtime skill path rewrites in applySurface (#817) * fix(#813): apply per-runtime skill path rewrites in applySurface applySurface() re-staged skill artifacts but, unlike installRuntimeArtifacts(), never applied the per-runtime path rewrites. So /gsd:surface (profile/enable/disable/reset) overwrote installed SKILL.md bodies with the converter's default ~/.claude paths instead of the install target (pathPrefix), silently regressing skill path references for every skillsKind runtime until the next reinstall. applySurface now mirrors installRuntimeArtifacts: for kind.kind === 'skills' it derives pathPrefix the same way and applies applyRuntimeContentRewritesInPlace on the staged dir before syncing. - bin/install.js: export applyRuntimeContentRewritesInPlace - runtime-artifact-layout.cts: carry resolved scope on Layout; export getInstallExports; type computePathPrefix/applyRuntimeContentRewritesInPlace on InstallExports - surface.cts: lazily derive pathPrefix (only when a skills kind exists) and apply the rewrite via the shared getInstallExports accessor — single source of truth with install, only skills kinds rewritten (matches install) - tests: regression test parameterized over cursor + codex asserting post-applySurface bodies carry the install pathPrefix, not ~/.claude - CONTEXT.md: glossary updated for the applySurface rewrite parity + scope seam Closes #813 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#813): add changeset fragment for PR #817 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * test(#813): normalize configDir prefix to forward slashes for Windows CI The #813 regression assertion compared skill bodies against a raw ${configDir}/ prefix, but production derives pathPrefix via path.resolve(configDir).replace(/\\/g, '/'). On Windows, mkdtempSync returns backslash paths while the rewritten body uses forward slashes, so the assertion would fail Windows-only (not covered by local gsd-test). Normalize the expected prefix the same way production does. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * fix(#816): mirror install command-prefix handling in _syncGsdDir (#822) * fix(#816): mirror install command-prefix handling in _syncGsdDir applySurface() via _syncGsdDir handled command artifacts differently from a fresh install. For flat command dirs (cursor/augment/opencode/kilo) install's _copyStaged adds kind.prefix (gsd-<stem>.md) and _removeGsdEntries prunes prefix-scoped, but _syncGsdDir copied staged files verbatim (unprefixed) and pruned by exact name. So every /gsd:surface toggle wrote wrong filenames, orphaned the installed gsd-*.md, and deleted user-authored command files. _syncGsdDir's commands/agents branch now mirrors install: - flat command dirs get the gsd- prefix on copy; namespaced dirs (commands/gsd) and agents keep staged names, using install's namespacedByDir rule - prune is prefix-scoped so user files in shared flat dirs are preserved; namespaced commands/gsd stays membership-pruned so superseded commands are still removed on profile shrink The naming rule is intentionally re-implemented (not via require('bin/install.js') to avoid its module-load banner side-effect); a strict parity test asserts applySurface and installRuntimeArtifacts produce identical command filenames for opencode/kilo/cursor/augment/gemini, guarding against drift. Closes #816 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#816): add changeset fragment for PR #822 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * chore(#771): convert agent color: hex/magenta values to documented named colors (#823) * chore(#771): convert agent color: hex/magenta values to documented named colors Claude Code's sub-agent `color:` field documents only 8 named colors (red, blue, green, yellow, purple, orange, pink, cyan). Twelve agent files used hex values and two used the undocumented `magenta`; convert each to the nearest documented named color so the intended per-agent TUI color differentiation is spec-compliant. - agents/*.md: 14 color values hex/magenta -> nearest named color - scripts/research-profiles.cjs: update the 3 generated research-agent profiles (source of truth) so gen-research-agents stays in sync - docs/AGENTS.md: update documented colors; add missing Color rows for gsd-nyquist-auditor, gsd-project-researcher, gsd-phase-researcher - tests/agent-frontmatter.test.cjs: add regression guard asserting every agent color: is in the documented named-color set Closes #771 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#771): add changeset Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * feat(#773): add --ephemeral and --dangerously-bypass-hook-trust to automated codex exec wrappers (#824) * feat(#773): add --ephemeral and --dangerously-bypass-hook-trust to automated codex exec invocations Automated codex exec calls in the review workflow now carry --ephemeral (no session-state accumulation across CI runs) and --dangerously-bypass-hook-trust (skip hook-trust prompts for hooks whose provenance gsd-core already controls). Both flags were verified present in the installed codex CLI (codex exec --help). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#773): correct changeset pr: reference to #824 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * feat(#775): ship a gemini-extension.json extension package (#818) Add a Gemini CLI extension package so users can install, update, and remove GSD through Gemini's own extension lifecycle and have it appear in `gemini extensions list`: gemini extensions install https://github.com/open-gsd/gsd-core gemini extensions update gsd-core gemini extensions uninstall gsd-core gemini extensions link /path/to/gsd-core # dev This mirrors the additive Claude Code plugin manifest (#766): a thin, version-stamped manifest enforced by an in-repo drift test. The extension ships the context-file payload (GEMINI.md), loaded into every Gemini session; slash-command/agent/hook TOML projection into the extension is a documented follow-up. The manual `npx gsd-core --gemini` installer (which provides the /gsd:* commands) is unchanged — purely additive, no breaking change. - gemini-extension.json: name=binName, version tracks package.json, description, contextFileName=GEMINI.md (minimal; no mcpServers — gsd ships no MCP server) - GEMINI.md: Gemini-session context payload - package.json: add both artifacts to files[] so they publish - CONTEXT.md: add "Gemini Extension Package" glossary entry - docs: USER-GUIDE + install-on-your-runtime how-to - tests/issue-775-gemini-extension.test.cjs: manifest validity, version parity with package.json, contextFileName existence, files[] publication Closes #775 Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * feat(#768): pre-populate settings.json permissions.allow/deny for Claude Code (#819) * feat(#768): pre-populate settings.json permissions.allow/deny for Claude Code Adds mergeClaudePermissions() to bin/install.js which non-destructively appends GSD's known-safe tool-call patterns to permissions.allow and defense-in-depth credential-file patterns to permissions.deny during Claude Code installs. Merge is idempotent (no duplicates on reinstall) and additive (existing user entries preserved). Uninstall removes only the exact GSD-owned entries. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore: update changeset pr number to 819 --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * feat(#774): emit service_tier/model_verbosity in Codex agent TOML + agents/openai.yaml skill chip (#828) * feat(#774): emit service_tier/model_verbosity in Codex agent TOML + agents/openai.yaml skill chip - Add service_tier = "flex" and model_verbosity = "low" to the Codex ConfigProfile TOML for light-tier agents (gsd-research-synthesizer, gsd-codebase-mapper, gsd-plan-checker, and 8 others identified via AGENT_DEFAULT_TIERS). Field names/values verified against Codex schema (profile_toml.rs / config_types.rs Verbosity enum). Non-light agents are unaffected. - Add generateCodexSkillMetadataYaml() and writeCodexSkillMetadataFiles(): after installRuntimeArtifacts, iterate every gsd-* skill directory, read the short-description already emitted in the SKILL.md frontmatter by convertClaudeCommandToCodexSkill, and write agents/openai.yaml with interface.display_name and interface.short_description for the Codex TUI skill picker chip. - yamlQuote (JSON.stringify) handles all YAML-unsafe chars. - User-owned gsd-dev-preferences dir is never overwritten. - Errors per-skill are swallowed so a bad SKILL.md can't abort install. - agents/openai.yaml is covered by the snapshot/rollback system and manifest hash (writeManifest hashes skill dirs recursively). - Uninstall symmetry: _removeGsdEntries removes whole gsd-* dirs. - 21 new tests in codex-config.test.cjs covering service_tier/verbosity TOML emission, YAML generation (round-trip via js-yaml), and writeCodexSkillMetadataFiles including an e2e integration test. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#774): correct docs-lint coverage — proper changeset format + USER-GUIDE entry Rewrite the changeset fragment from old @opengsd/gsd-core:patch format to the required type:/pr: schema so the docs-lint parser can consume it. Add a new "Codex skill picker and agent scheduling (#774)" section to docs/USER-GUIDE.md describing the flex-tier scheduling and /skills TUI chip enrichments — both are user-visible and belong in docs rather than behind a docs-exempt marker. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * feat(#769): adopt context:fork + effort on heavy workflow skills (#820) * feat(#769): emit context:fork + effort: frontmatter on heavy workflow skills Add `context: fork` and `effort: xhigh` to the three heaviest workflow commands (plan-phase, execute-phase, autonomous) and `effort: low` to the two quick-status commands (progress, stats). On Claude Code, `context: fork` runs the skill in an isolated subagent context window so the main session's context budget is protected. `effort: xhigh` / `effort: low` signal the appropriate token-budget tier to the runtime. Both fields are silently ignored by runtimes that do not recognise them (Gemini, Codex, Cursor, etc.) — no behaviour change outside Claude Code. Update convertClaudeCommandToClaudeSkill in bin/install.js to preserve `context:` and `effort:` when rewriting source command files to SKILL.md for a Claude global install. Add install-suite tests to assert the fields are present in both source commands and the installed SKILL.md output. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * test(#769): tighten regex assertions + add execute/plan-phase effort coverage Fix low-severity adversarial finding: tighten test regex patterns from `\s*` to `[ \t]*` so they cannot match across newlines (CRLF parity). Add missing effort: xhigh assertions for gsd-execute-phase and gsd-plan-phase SKILL.md install output to complete the black-box coverage gap. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * feat(#772): adopt stable Codex hook events + commandWindows for Windows parity (#827) * feat(#772): adopt stable Codex hook events + commandWindows for Windows parity Register three new stable Codex hook events (SubagentStart, Stop, PostToolUse) wired to gsd-context-monitor.js so Codex installs get the same context-headroom tracking at subagent and session boundaries that Claude/Qwen already have. Add commandWindows field to the SessionStart hook entry on Windows so Codex uses the .cmd shim directly (Git Bash/MSYS cannot POSIX-exec node.exe). commandWindows is only emitted on win32; POSIX is unchanged. Refactor reconcileCodexHooksJsonSessionStart into a generic reconcileCodexHooksJsonEvent so any event name can be reconciled with the same dedup/preserve-user-entries logic. Add gsd-context-monitor.js and .cmd to MANAGED_HOOK_COMMAND_BASENAMES _BY_SURFACE so idempotent re-runs de-duplicate entries correctly. 30 new tests covering: export surface, event registration for each of the three events, commandWindows parity (POSIX vs win32), idempotency, uninstall, and user-entry preservation. Closes #772 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#772): windows path normalization + docs-lint - Normalize scriptPath backslashes to forward slashes in ensureCodexHooksJsonEvent and ensureCodexHooksJsonSessionStart so that isManagedHookCommand can match stored commands against configDir on Windows CI runners. path.resolve returns backslash paths on Windows, but when platform is not 'win32' (e.g. platform:'linux' in tests), projectManagedHookCommand skips normalization — producing a mismatch that breaks idempotency deduplication (the same hook entry appended twice on re-register). Forward-slash paths are always valid in both Node.js and Codex, so the normalization is safe for all platforms. - Fix changeset pr: 0 → 827 to resolve fail_malformed_fragment. - Add Codex hook coverage table to docs/how-to/install-on-your-runtime.md documenting the SubagentStart/Stop/PostToolUse events + commandWindows Windows-parity field added by this enhancement. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * feat(#778): cross-runtime command enrichment (Gemini {{args}}/!{}, Qwen priority) (#825) * feat(#778): cross-runtime command enrichment (Gemini {{args}}/!{}, Qwen priority) Enrich the installer's per-runtime command/skill generators with native, verified, additive fields: - Gemini CLI: map Claude's $ARGUMENTS -> Gemini's {{args}} in generated TOML commands so typed arguments interpolate; inject live .planning/STATE.md into /gsd:progress via a fixed, injection-safe !{cat .planning/STATE.md 2>/dev/null} shell block (no interpolated input). - Qwen Code: emit the optional numeric `priority` field on main-loop skills so the most-used workflows sort first in the /skills list (higher = earlier per the Qwen skills spec; the issue's inverse numbering was corrected). OpenCode per-command model/agent/subtask/variant enrichment was evaluated and intentionally not implemented: `model` reintroduces the #1156 ProviderModelNotFoundError regression for non-Anthropic providers (the converter deliberately strips model:), `subtask`/`agent` change execution semantics for GSD's interactive commands, and `variant` is not in the OpenCode command schema. Schemas verified against primary docs (Gemini custom-commands, Qwen skills, OpenCode commands/skills). Adds tests/enh-778-* and how-to + USER-GUIDE docs. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#778): set changeset PR number to 825 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * feat(#789): elevate CodeBuddy — slash commands (#830) * feat(#789): elevate CodeBuddy — emit slash commands (+ document subagent/MCP scope) Emit a CodeBuddy slash-command surface so GSD workflows appear in the '/' menu, reaching parity with other elevated runtimes. - Add convertClaudeCommandToCodebuddyCommand and register a commands/ artifact kind for the codebuddy runtime (commands/gsd-<name>.md), consistent with the Cursor (#785) and Augment (#790) commands surfaces. - Mark emitted skills user-invocable:false so the commands surface is the sole '/' entry point (no duplicate /gsd-* entries); skills stay model-invocable. CodeBuddy's SKILL.md supports this field. - Normalize $HOME/.codebuddy (bare + slash) path forms in runtime rewrites so --config-dir/local installs don't leak the default home. - Report installed commands/ count on install; uninstall prunes gsd-* commands while preserving user-owned commands. Scope: subagents (~/.codebuddy/agents/) are already emitted by the generic agents block (unchanged); no mcp.json is written (gsd ships no MCP server, and CodeBuddy's mcp.json registers only external servers). Closes #789 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#789): set changeset pr number to 830 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * feat(#776): Gemini hook events (BeforeAgent/AfterAgent/BeforeModel) + hooksConfig.enabled check (#829) * feat(#776): Gemini hook events (BeforeAgent/AfterAgent/BeforeModel) + hooksConfig.enabled check Register three new Gemini-CLI hook events on install: - BeforeAgent: fires before agent planning; wired to gsd-context-monitor - AfterAgent: fires after final response generation; wired to gsd-context-monitor - BeforeModel: fires before each LLM call (per-turn); wired to gsd-context-monitor All three reuse gsd-context-monitor.js (no new hook files). Uninstall cleanup loop extended to remove the new events. Non-array guard added for robustness against malformed settings. Also detect hooksConfig.enabled:false in Gemini settings and emit a clear warning — without this check, all registered hooks silently do nothing. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore: update changeset pr: 829 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * docs(#776): document Gemini hook events Add hook coverage table to the Gemini CLI section of install-on-your-runtime.md, covering the three new events (BeforeAgent/AfterAgent/BeforeModel wired to gsd-context-monitor) plus a callout for the hooksConfig.enabled:false silent failure mode detected by the installer. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * feat(#777): register Cursor-native hooks (.cursor/hooks.json) for session-start/post-tool parity (#831) * feat(#777): register Cursor-native hooks (.cursor/hooks.json) for session-start/post-tool parity - Add gsd-cursor-session-start.js: injects STATE.md presence reminder (or new-project nudge) into Cursor sessions via the sessionStart hook event - Add gsd-cursor-post-tool.js: emits an additional_context nudge when write-class tool calls touch .planning/ files (postToolUse hook event) - Add 'cursor-hooks-json' installSurface to runtime-config-adapter-registry; writeCursorHooksJson/reconcileCursorHooksJson write the canonical { version: 1, hooks: { sessionStart, postToolUse } } JSON shape with idempotent reconciliation that preserves user-owned hook entries - Hook scripts are copied with /gsd:→gsd- rewrite so installed files contain no colon-form slash-command refs (bug-376 invariant) - 20 new tests in tests/cursor-hooks.test.cjs cover all reconciler paths, entry helpers, removal, runtime adapter surface, and hook script behavior - Update CONTEXT.md, ARCHITECTURE.md, installer-migrations.md, and 000-first-time-baseline.cts to include Cursor hooks.json surface Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#777): build hooks/dist on demand in bug-376 test for scoped/windows CI hooks/dist is gitignored and only produced by `npm run build:hooks`. The CI scoped (ubuntu-latest/node-22) and windows (windows-latest/node-24) test jobs do NOT run build:hooks before executing tests, so bug-376's prerequisite suite was failing with "hooks/dist not found" on both legs. Add ensureHooksDist() helper (mirrors bug-3357 pattern) that builds hooks/dist on demand in the before() hooks of prerequisite and Suite 3. Also add ensureHooksDist() call to Suite 3's before() so the snapshot step is also hermetic. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * docs(#832): add how-to guide for minimal install / skill profiles (#835) Add docs/how-to/install-minimal-and-add-skills.md covering the --minimal / --core-only / --profile=core install, the core/standard/full profiles, and growing the surface live via /gsd:surface or on reinstall. Register it in the docs/README.md How-to guides index. Closes #832 Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * feat(#815): add /gsd-update --next to install the @next RC channel (#839) Adds an opt-in --next (alias --rc) flag to /gsd-update targeting the @next RC dist-tag (ADR #660), with a {latest,next} allowlist enforced at three layers, channel-aware version check + banner, and byte-for-byte unchanged default @latest behavior. Closes #815 * fix(#837): three-dot diff in ci-test-scope so docs-only PRs skip the heavy matrix (#841) CI test-scope detection diffed changed files with a two-dot `git diff --name-only base head`, where base is the moving tip of `next`. A PR branch cut from a slightly older `next` surfaced every product file `next` had gained since the merge-base, flipping product_changed/full_matrix and running the full Windows/macOS matrix + coverage on docs-only PRs. Switch to a three-dot `git diff --name-only base...head` (vs the merge-base), matching GitHub's PR "Files changed" semantics. Add a regression test that builds a stale-base topology, plus a guard test pinning `fetch-depth: 0` on the `changes` job (required for the merge-base to be locally available). Closes #837 Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * feat(#836): no-LLM duplicate-issue detection + challenge + 1-day auto-close (#843) * feat(#836): no-LLM duplicate-issue detection + challenge + 1-day auto-close Adds a deterministic (no-LLM) duplicate-issue governance lifecycle: - scripts/issue-dedupe.cjs: pure, unit-tested module (tokenize, Sørensen–Dice title similarity, scoreCandidates, renderChallengeComment, shouldClose) with fail-safe destructive-action guards. - duplicate-check.yml (issues:opened): scores new-issue title against open issues, posts a challenge comment + applies the pending `possible-duplicate` label on a clear match. - duplicate-sweep.yml (daily cron): closes possible-duplicate issues whose challenge comment is >24h old with no human reply and no 👎 veto; honors exempt labels; re-checks the label immediately before close (TOCTOU guard); strips the label on close to avoid reopen loops. - remove-duplicate-label.yml (issue_comment:created): clears the label and applies needs-maintainer-review when any human responds. - bug_report.yml / docs_issue.yml: add the required "I searched existing issues" preflight checkbox so all five forms force a pre-search attestation. - docs/agents/triage-labels.md: document the label + lifecycle. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * chore(#836): add changeset fragment for duplicate-issue detection Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * feat(#770): register Claude Code lifecycle hooks (SubagentStop/Stop/PreCompact/FileChanged) (#821) * feat(#770): register Claude Code lifecycle hooks (SubagentStop/Stop/PreCompact/FileChanged) Wire three new context-tracking events (SubagentStop, Stop, PreCompact) to gsd-context-monitor so context-headroom warnings surface at model-stop and subagent-finalisation moments — not just on PostToolUse. Add a new FileChanged hook (gsd-config-reload.js) that hot-reloads .planning/config.json context mid-session when the user edits it, injecting a config summary as hookSpecificOutput.additionalContext. Updates plugin manifest hooks.json, managed-hooks-registry, installer-migration-report allowlist, and shell-command-projection cleanup tables. Tests: 21 new assertions in enh-770-claude-hook-events.test.cjs; enh-788 and issue-766 test suites updated. Closes #770 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * docs(#770): document newly-registered Claude Code lifecycle hooks Add a Hook coverage table to the Claude Code npm installer section of docs/how-to/install-on-your-runtime.md describing SubagentStop, Stop, PreCompact, and the new FileChanged (gsd-config-reload.js) hook that hot-reloads .planning/config.json mid-session. Also fixes the changeset frontmatter (adds type: Added + pr: 821) so docs-lint can consume the fragment. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#770): add gsd-config-reload.js to INVENTORY.md and regenerate manifest The feat commit added hooks/gsd-config-reload.js but did not bump the Hooks count in docs/INVENTORY.md (14→15) or add the new row, and did not regenerate docs/INVENTORY-MANIFEST.json. Both inventory-counts and inventory-manifest-sync tests failed across the full CI matrix. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#770): make lifecycle-hook tests deterministic on scoped runner Replace the shared hooks/dist/ ensemble setup (ensureHooksDist / teardownHooksDist) in the Claude hook tests with per-test isolation: pre-populate each test's own tmpDir/.claude/hooks/ with stub files and pass installerMigrations:[] to install() so the first-time-baseline migration does not remove the stubs before the copy step can run. Root cause: hooks/dist/ is gitignored and absent on a fresh npm ci. ensureHooksDist() created it and teardownHooksDist() deleted it, but with --test-concurrency=4 both test files ran concurrently as separate Node.js worker processes sharing the same filesystem. One file's afterEach teardown deleted hooks/dist/ while the other file's install() was copying from it, producing an ENOENT (reproduced 2/10 runs locally). The additional issue: even with pre-placed stubs surviving the copy race, the 000-first-time-baseline migration classified hooks/gsd-*.js as bundled-gsd-hook artifacts, auto-removed them, and the copy step never re-ran (hooks/dist/ absent) — leaving contextMonitorFile missing and all hook registrations silently skipped (the 'got: []' symptom). Fix: pre-populate targetDir/hooks/ per-test (isolated temp dir) AND pass installerMigrations:[] so the baseline scan is skipped. The Qwen suites already used this pattern correctly; the Claude suites are aligned to it. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#770): ship gsd-config-reload.js by adding it to build-hooks HOOKS_TO_COPY The #770 feature added hooks/gsd-config-reload.js and registered it in MANAGED_HOOKS, the installer, INVENTORY, and the test EXPECTED_ALL_HOOKS list — but never added it to scripts/build-hooks.js HOOKS_TO_COPY. As a result the hook was never copied into hooks/dist/ during the build, so: - the hook would never ship to users (real production bug — the FileChanged config-reload feature was dead-on-arrival), and - install-minimal-hooks.test.cjs #1755 ("all expected hooks are copied from hooks/dist/ to target", ".js hooks are executable after copy", "manifest contains .js hook entries") failed on any environment with a clean checkout (no pre-existing hooks/dist/): coverage, full test macos-22/macos-24, test ubuntu-24. The failures were masked locally only by a stale hooks/dist/ left from a prior build (build-hooks copies into dist without clearing it). On CI's fresh `npm ci` there is no dist, so the omission surfaced. Fix: add 'gsd-config-reload.js' to HOOKS_TO_COPY so build-hooks stages it into hooks/dist/ alongside the other JS hooks. Verified by removing hooks/dist/ and rerunning the full suite green (0 fail). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(#770): make config prototype-pollution beforeEach deterministic on scoped runner Root cause: the #663 and alert-#26 prototype-pollution describe blocks seeded .planning/config.json in beforeEach via a bare runGsdTools('config-ensure-section') whose result was discarded. That command runs in a spawned gsd-tools child; on the scoped CI lane (--test-concurrency=4, config.test.cjs scheduled alongside the heavy install/tarball suites that #770 pulled into the targeted set) the child can be transiently killed under resource pressure (non-zero exit, empty stderr — an OS-level kill, not an app error). The swallowed failure left config.json absent, so the first subtest's readConfig() threw ENOENT opening <tmp>/.planning/config.json. Only 1 of 4 subtests failed, confirming a per-invocation transient, not a deterministic miss; the full suite schedules files differently so config.test.cjs did not collide with those heavy neighbors → passed there. Fix: add ensureConfigReady(tmpDir) which retries config-ensure-section on ANY failure or missing file and throws a clear diagnostic if it still cannot create config.json, then use it in both prototype-pollution beforeEach blocks. Setup is now deterministic under load; the #663/alert-#26 security assertions are unchanged. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * fix(#844): sync runtime manifest versions on npm version bump (#845) * fix(#844): sync runtime manifest versions on npm version bump The release workflow bumps package.json via `npm version` but never stamped the runtime-integration manifests that must track it (.claude-plugin/plugin.json #766, gemini-extension.json #775), so the first RC/finalize whose version diverged from the -dev stream failed the test suite before tagging/publishing. Add scripts/sync-manifest-versions.cjs (single VERSIONED_MANIFESTS registry) wired to a `version` npm lifecycle hook that stamps + stages the manifests on every `npm version` — covering all four release bump sites and local bumps with no workflow edits. A regression guard test fails if any repo JSON whose version matches package.json is not registered, forcing future version-bearing manifests into the sync. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * docs(#844): add changeset for manifest version sync fix Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> * chore: bump to 1.4.0-rc.2 * chore: finalize v1.4.0 * chore: promote CHANGELOG for v1.4.0 --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> Co-authored-by: Colin <colin@solvely.net> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Joe <44273333+jslitzkerttcu@users.noreply.github.com> Co-authored-by: Solvely-Colin <211764741+Solvely-Colin@users.noreply.github.com>
532 lines
19 KiB
Markdown
532 lines
19 KiB
Markdown
# GSD CLI Tools Reference
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> Reference for the `gsd-tools` CLI (`gsd-core/bin/gsd-tools.cjs`). For slash commands and user flows, see [Command Reference](COMMANDS.md). Return to [docs index](README.md).
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---
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## Overview
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`gsd-tools.cjs` centralizes config parsing, model resolution, phase lookup, git commits, summary verification, state management, and template operations across GSD commands, workflows, and agents.
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| ------------------ | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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| **Shipped path** | `gsd-core/bin/gsd-tools.cjs` |
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| **Implementation** | 20 domain modules under `gsd-core/bin/lib/` (the directory is authoritative) |
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| **Status** | Primary runtime command surface for orchestration, workflows, and automation. |
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**Usage (CJS):**
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```bash
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node gsd-tools.cjs <command> [args] [--raw] [--cwd <path>]
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```
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**Global flags (CJS):**
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| Flag | Description |
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| -------------- | ---------------------------------------------------------------------------- |
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| `--raw` | Machine-readable output (JSON or plain text, no formatting) |
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| `--cwd <path>` | Override working directory (for sandboxed subagents) |
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| `--ws <name>` | Workstream context for `.planning/workstreams/<name>` paths |
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---
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## State Commands
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Manage `.planning/STATE.md` — the project's living memory.
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```bash
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# Load full project config + state as JSON
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node gsd-tools.cjs state load
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# Output STATE.md frontmatter as JSON
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node gsd-tools.cjs state json
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# Update a single field
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node gsd-tools.cjs state update <field> <value>
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# Get STATE.md content or a specific section
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node gsd-tools.cjs state get [section]
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# Batch update multiple fields
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node gsd-tools.cjs state patch --field1 val1 --field2 val2
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# Increment plan counter
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node gsd-tools.cjs state advance-plan
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# Record execution metrics
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node gsd-tools.cjs state record-metric --phase N --plan M --duration Xmin [--tasks N] [--files N]
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# Recalculate progress bar
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node gsd-tools.cjs state update-progress
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# Add a decision
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node gsd-tools.cjs state add-decision --summary "..." [--phase N] [--rationale "..."]
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# Or from files:
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node gsd-tools.cjs state add-decision --summary-file path [--rationale-file path]
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# Add/resolve blockers
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node gsd-tools.cjs state add-blocker --text "..."
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node gsd-tools.cjs state resolve-blocker --text "..."
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# Record session continuity
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node gsd-tools.cjs state record-session --stopped-at "..." [--resume-file path]
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# Phase start — update STATE.md Status/Last activity for a new phase
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node gsd-tools.cjs state begin-phase --phase N --name SLUG --plans COUNT
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# Agent-discoverable blocker signalling (used by discuss-phase / UI flows)
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node gsd-tools.cjs state signal-waiting --type TYPE --question "..." --options "A|B" --phase P
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node gsd-tools.cjs state signal-resume
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```
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### State Snapshot
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Structured parse of the full STATE.md:
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```bash
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node gsd-tools.cjs state-snapshot
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```
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Returns JSON with: current position, phase, plan, status, decisions, blockers, metrics, last activity.
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---
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## Phase Commands
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Manage phases — directories, numbering, and roadmap sync.
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```bash
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# Find phase directory by number
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node gsd-tools.cjs find-phase <phase>
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# Calculate next decimal phase number for insertions
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node gsd-tools.cjs phase next-decimal <phase>
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# Append new phase to roadmap + create directory
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node gsd-tools.cjs phase add <description>
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# Insert decimal phase after existing
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node gsd-tools.cjs phase insert <after> <description>
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# Remove phase, renumber subsequent
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node gsd-tools.cjs phase remove <phase> [--force]
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# Mark phase complete, update state + roadmap
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node gsd-tools.cjs phase complete <phase>
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# Index plans with waves and status
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node gsd-tools.cjs phase-plan-index <phase>
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# List phases with filtering
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node gsd-tools.cjs phases list [--type planned|executed|all] [--phase N] [--include-archived]
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```
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---
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## Roadmap Commands
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Parse and update `ROADMAP.md`.
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```bash
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# Extract phase section from ROADMAP.md
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node gsd-tools.cjs roadmap get-phase <phase>
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# Full roadmap parse with disk status
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node gsd-tools.cjs roadmap analyze
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# Update progress table row from disk
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node gsd-tools.cjs roadmap update-plan-progress <N>
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```
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---
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## Config Commands
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Read and write `.planning/config.json`.
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```bash
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# Initialize config.json with defaults
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node gsd-tools.cjs config-ensure-section
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# Set a config value (dot notation)
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node gsd-tools.cjs config-set <key> <value>
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# Get a config value
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node gsd-tools.cjs config-get <key>
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# Set model profile
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node gsd-tools.cjs config-set-model-profile <profile>
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```
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---
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## Model Resolution
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```bash
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# Get model for agent based on current profile
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node gsd-tools.cjs resolve-model <agent-name>
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# Raw output returns the selected model ID/tier.
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# JSON output also includes profile and, when the active runtime supports it,
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# reasoning_effort.
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```
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Agent names: `gsd-planner`, `gsd-executor`, `gsd-phase-researcher`, `gsd-project-researcher`, `gsd-research-synthesizer`, `gsd-verifier`, `gsd-plan-checker`, `gsd-integration-checker`, `gsd-roadmapper`, `gsd-debugger`, `gsd-codebase-mapper`, `gsd-nyquist-auditor`
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---
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## Verification Commands
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Validate plans, phases, references, and commits.
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```bash
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# Verify SUMMARY.md file
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node gsd-tools.cjs verify-summary <path> [--check-count N]
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# Check PLAN.md structure + tasks
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node gsd-tools.cjs verify plan-structure <file>
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# Check all plans have summaries
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node gsd-tools.cjs verify phase-completeness <phase>
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# Check @-refs + paths resolve
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node gsd-tools.cjs verify references <file>
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# Batch verify commit hashes
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node gsd-tools.cjs verify commits <hash1> [hash2] ...
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# Check must_haves.artifacts
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node gsd-tools.cjs verify artifacts <plan-file>
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# Check must_haves.key_links
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node gsd-tools.cjs verify key-links <plan-file>
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```
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---
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## Validation Commands
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Check project integrity.
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```bash
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# Check phase numbering, disk/roadmap sync
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node gsd-tools.cjs validate consistency
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# Check .planning/ integrity, optionally repair
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node gsd-tools.cjs validate health [--repair]
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# Probe context-window utilization for status-line / hook callers (v1.40.0)
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node gsd-tools.cjs validate context
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# Context utilization as typed JSON surface (#455)
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node gsd-tools.cjs validate context --json
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```
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`validate context` emits a structured envelope with `utilization`, `status`
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(`ok` / `warn` / `critical` at the 60 % / 70 % thresholds), and a
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`suggestion` string. The same data backs `/gsd-health --context`.
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Pass `--json` to receive the typed IR directly (useful in scripts and test assertions).
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---
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## Template Commands
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Template selection and filling.
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```bash
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# Select summary template based on granularity
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node gsd-tools.cjs template select <type>
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# Fill template with variables
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node gsd-tools.cjs template fill <type> --phase N [--plan M] [--name "..."] [--type execute|tdd] [--wave N] [--fields '{json}']
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```
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Template types for `fill`: `summary`, `plan`, `verification`
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---
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## Frontmatter Commands
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YAML frontmatter CRUD operations on any Markdown file.
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```bash
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# Extract frontmatter as JSON
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node gsd-tools.cjs frontmatter get <file> [--field key]
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# Update single field
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node gsd-tools.cjs frontmatter set <file> --field key --value jsonVal
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# Merge JSON into frontmatter
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node gsd-tools.cjs frontmatter merge <file> --data '{json}'
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# Validate required fields
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node gsd-tools.cjs frontmatter validate <file> --schema plan|summary|verification
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```
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---
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## Scaffold Commands
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Create pre-structured files and directories.
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```bash
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# Create CONTEXT.md template
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node gsd-tools.cjs scaffold context --phase N
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# Create UAT.md template
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node gsd-tools.cjs scaffold uat --phase N
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# Create VERIFICATION.md template
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node gsd-tools.cjs scaffold verification --phase N
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# Create phase directory
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node gsd-tools.cjs scaffold phase-dir --phase N --name "phase name"
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```
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---
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## Init Commands (Compound Context Loading)
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Load all context needed for a specific workflow in one call. Returns JSON with project info, config, state, and workflow-specific data.
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```bash
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node gsd-tools.cjs init execute-phase <phase>
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node gsd-tools.cjs init plan-phase <phase>
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node gsd-tools.cjs init new-project
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node gsd-tools.cjs init new-milestone
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node gsd-tools.cjs init quick <description>
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node gsd-tools.cjs init resume
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node gsd-tools.cjs init verify-work <phase>
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node gsd-tools.cjs init phase-op <phase>
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node gsd-tools.cjs init todos [area]
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node gsd-tools.cjs init milestone-op
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node gsd-tools.cjs init map-codebase
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node gsd-tools.cjs init progress
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# Workstream-scoped init (`--ws` flag)
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node gsd-tools.cjs init execute-phase <phase> --ws <name>
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node gsd-tools.cjs init plan-phase <phase> --ws <name>
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```
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**Large payload handling:** When output exceeds ~50KB, the CLI writes to a temp file and returns `@file:/tmp/gsd-init-XXXXX.json`. Workflows check for the `@file:` prefix and read from disk:
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```bash
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INIT=$(node gsd-tools.cjs init execute-phase "1")
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if [[ "$INIT" == @file:* ]]; then INIT=$(cat "${INIT#@file:}"); fi
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```
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---
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## Milestone Commands
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```bash
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# Archive milestone
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node gsd-tools.cjs milestone complete <version> [--name <name>] [--archive-phases]
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# Mark requirements as complete
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node gsd-tools.cjs requirements mark-complete <ids>
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# Accepts: REQ-01,REQ-02 or REQ-01 REQ-02 or [REQ-01, REQ-02]
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```
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---
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## Agent Skills
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Emit the skill block for a given agent type.
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```bash
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# Emit raw XML skill block (default — safe for shell expansion)
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node gsd-tools.cjs agent-skills <agent-type>
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# Emit typed JSON surface (#455) — { agent_type, block, skills_count }
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node gsd-tools.cjs agent-skills <agent-type> --json
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```
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The `--json` flag returns a typed IR object suitable for structured consumption and test assertions, while the default (no flag) preserves the raw XML output that workflow shell expansions rely on.
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---
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## Skill Manifest
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Pre-compute and cache skill discovery for faster command loading.
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```bash
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# Generate skill manifest (writes to .claude/skill-manifest.json)
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node gsd-tools.cjs skill-manifest
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# Generate with custom output path
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node gsd-tools.cjs skill-manifest --output <path>
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```
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Returns JSON mapping of all available GSD skills with their metadata (name, description, file path, argument hints). Used by the installer and session-start hooks to avoid repeated filesystem scans.
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---
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## Utility Commands
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```bash
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# Convert text to URL-safe slug
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node gsd-tools.cjs generate-slug "Some Text Here"
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# → some-text-here
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# Get timestamp
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node gsd-tools.cjs current-timestamp [full|date|filename]
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# Count and list pending todos
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node gsd-tools.cjs list-todos [area]
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# Check file/directory existence
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node gsd-tools.cjs verify-path-exists <path>
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# Aggregate all SUMMARY.md data
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node gsd-tools.cjs history-digest
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# Extract structured data from SUMMARY.md
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node gsd-tools.cjs summary-extract <path> [--fields field1,field2]
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# Project statistics
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node gsd-tools.cjs stats [json|table]
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# Progress rendering (human-readable)
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node gsd-tools.cjs progress [json|table|bar]
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# Progress as typed JSON surface (#455)
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node gsd-tools.cjs progress --json
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# Complete a todo
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node gsd-tools.cjs todo complete <filename>
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# UAT audit — scan all phases for unresolved items
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node gsd-tools.cjs audit-uat
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# Cross-artifact audit queue — scan `.planning/` for unresolved audit items
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node gsd-tools.cjs audit-open [--json]
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# Reverse-migrate a GSD-2 project into the current structure (backs `/gsd-import --from-gsd2`)
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node gsd-tools.cjs from-gsd2 [--path <dir>] [--force] [--dry-run]
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# Git commit with config checks
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node gsd-tools.cjs commit <message> [--files f1 f2] [--amend] [--no-verify] [--respect-staged]
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```
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> `--no-verify`: Skips pre-commit hooks. Used by parallel executor agents during wave-based execution to avoid build lock contention (e.g., cargo lock fights in Rust projects). The orchestrator runs hooks once after each wave completes. Do not use `--no-verify` during sequential execution — let hooks run normally.
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> `--files <paths>` **staging behaviour**: by default, `--files` runs `git add -- <path>` for each named file before committing. This overwrites any per-hunk staging set up via `git add -p`. Pass `--respect-staged` to skip the `git add` step and commit only what is already in the index within the requested pathspec. If nothing is staged within that scope, the command returns `{ committed: false, reason: 'nothing staged' }` without error. The trailing `-- <paths>` pathspec on the commit is applied under both modes, so files staged outside the `--files` scope are never included (#3061 invariant).
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# Web search (requires Brave API key)
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node gsd-tools.cjs websearch <query> [--limit N] [--freshness day|week|month]
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```
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---
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## Worktree Commands
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Diagnose and configure the worktree fork base used by Claude Code's `isolation="worktree"` executor dispatch. These commands address the branch-divergence condition described in [Fix the worktree base-mismatch (exit 42) error](how-to/fix-worktree-base-mismatch.md).
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```bash
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# Check whether the current HEAD has diverged from the worktree fork base.
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# Returns JSON: { shouldDegrade, reason, message, headSha, forkRef, forkSha }
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node gsd-tools.cjs worktree base-check
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# Write worktree.baseRef:"head" into .claude/settings.local.json (no-clobber).
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# Returns JSON: { changed, skipped, previous, baseRef, file }
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node gsd-tools.cjs worktree set-baseref
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```
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**`worktree base-check`** reads `worktree.baseRef` from `.claude/settings.local.json` (then `.claude/settings.json`) and compares the current `HEAD` SHA against `origin/HEAD`. The `shouldDegrade` field is `true` when the execute-phase orchestrator will fall back to sequential execution. Possible `reason` values:
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| `reason` | `shouldDegrade` | Meaning |
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|---|---|---|
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| `baseref-head` | `false` | `worktree.baseRef:"head"` is set; no mismatch possible |
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| `head-matches-fork` | `false` | HEAD and `origin/HEAD` are the same commit |
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| `head-diverged-from-fork` | `true` | Branch is ahead of or diverged from `origin/HEAD` |
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| `fork-ref-unknown` | `true` | `origin/HEAD` could not be resolved |
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| `no-head` | `false` | Not in a git repo (no `HEAD`) |
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**`worktree set-baseref`** applies a no-clobber write of `worktree.baseRef:"head"` to `.claude/settings.local.json`. If the file already contains an explicit `baseRef` value other than `"head"`, the existing value is preserved and `skipped:"explicit-other"` is returned. Malformed JSON causes an error rather than a silent overwrite. Both fresh installs and upgrades of GSD Core run this automatically when `workflow.use_worktrees` is enabled (the default); the command is also available for manual use — for example, to apply the setting when worktrees were toggled on after installation, or to re-apply it after a settings change.
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---
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## Graphify
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Build, query, and inspect the project knowledge graph in `.planning/graphs/`. Requires `graphify.enabled: true` in `config.json` (see [Configuration Reference](CONFIGURATION.md#graphify-settings)).
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```bash
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# Build or rebuild the knowledge graph
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node gsd-tools.cjs graphify build
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# Search the graph for a term
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node gsd-tools.cjs graphify query <term>
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# Show graph freshness and statistics
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node gsd-tools.cjs graphify status
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|
|
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# Show changes since the last build
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node gsd-tools.cjs graphify diff
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|
|
# Write a named snapshot of the current graph
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node gsd-tools.cjs graphify snapshot [name]
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```
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User-facing entry point: `/gsd-graphify` (see [Command Reference](COMMANDS.md#gsd-graphify)).
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|
|
---
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## Module Architecture
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|
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|
| Module | File | Exports |
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|
|--------|------|---------|
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| Core | `lib/core.cjs` | `error()`, `output()`, `parseArgs()`, shared utilities, compatibility re-exports |
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|
| State | `lib/state.cjs` | All `state` subcommands, `state-snapshot` |
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|
| Phase | `lib/phase.cjs` | Phase CRUD, `find-phase`, `phase-plan-index`, `phases list` |
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|
| Planning Workspace | `lib/planning-workspace.cjs` | Planning seam: `planningDir`, `planningPaths`, active workstream routing, `.planning/.lock` |
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| Roadmap | `lib/roadmap.cjs` | Roadmap parsing, phase extraction, progress updates |
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|
| Config | `lib/config.cjs` | Config read/write, section initialization |
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|
| Verify | `lib/verify.cjs` | All verification and validation commands |
|
|
| Template | `lib/template.cjs` | Template selection and variable filling |
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|
| Frontmatter | `lib/frontmatter.cjs` | YAML frontmatter CRUD |
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|
| Init | `lib/init.cjs` | Compound context loading for all workflows |
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|
| Milestone | `lib/milestone.cjs` | Milestone archival, requirements marking |
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|
| Commands | `lib/commands.cjs` | Misc: slug, timestamp, todos, scaffold, stats, websearch |
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| Model Profiles | `lib/model-profiles.cjs` | Profile resolution table |
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|
| UAT | `lib/uat.cjs` | Cross-phase UAT/verification audit |
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|
| Profile Output | `lib/profile-output.cjs` | Developer profile formatting |
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|
| Profile Pipeline | `lib/profile-pipeline.cjs` | Session analysis pipeline |
|
|
| Graphify | `lib/graphify.cjs` | Knowledge graph build/query/status/diff/snapshot (backs `/gsd-graphify`) |
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|
| Learnings | `lib/learnings.cjs` | Extract learnings from phases/SUMMARY artifacts (backs `/gsd-extract-learnings`) |
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|
| Audit | `lib/audit.cjs` | Phase/milestone audit queue handlers; `audit-open` helper |
|
|
| GSD2 Import | `lib/gsd2-import.cjs` | Reverse-migration importer from GSD-2 projects (backs `/gsd-import --from-gsd2`) |
|
|
| Intel | `lib/intel.cjs` | Queryable codebase intelligence index (backs `/gsd-map-codebase --query`) |
|
|
| Worktree Base Ref | `lib/worktree-base-ref.cjs` | Worktree fork-base detection and `worktree base-check` / `set-baseref` commands (#683) |
|
|
|
|
---
|
|
|
|
## Reviewer CLI Routing
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|
|
|
`review.models.<cli>` maps a reviewer flavor to a shell command invoked by the code-review workflow. Set via [`/gsd-config --integrations`](COMMANDS.md#gsd-config) or directly:
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|
|
|
```bash
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node gsd-tools.cjs config-set review.models.codex "codex exec --model gpt-5"
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|
node gsd-tools.cjs config-set review.models.gemini "gemini -m gemini-2.5-pro"
|
|
node gsd-tools.cjs config-set review.models.opencode "opencode run --model claude-sonnet-4"
|
|
node gsd-tools.cjs config-set review.models.claude "" # clear — fall back to session model
|
|
```
|
|
|
|
Slugs are validated against `[a-zA-Z0-9_-]+`; empty or path-containing slugs are rejected. See [`docs/CONFIGURATION.md`](CONFIGURATION.md#code-review-cli-routing) for the full field reference.
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|
|
## Secret Handling
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|
|
|
API keys configured via `/gsd-settings` (`brave_search`, `firecrawl`, `exa_search`) are written plaintext to `.planning/config.json` but are masked (`****<last-4>`) in every `config-set` / `config-get` output, confirmation table, and interactive prompt. See `gsd-core/bin/lib/secrets.cjs` for the masking implementation. The `config.json` file itself is the security boundary — protect it with filesystem permissions and keep it out of git (`.planning/` is gitignored by default).
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|
|
|
---
|
|
|
|
## Related
|
|
|
|
- [Commands](COMMANDS.md)
|
|
- [Configuration](CONFIGURATION.md)
|
|
- [Architecture](ARCHITECTURE.md)
|
|
- [Fix the worktree base-mismatch (exit 42) error](how-to/fix-worktree-base-mismatch.md)
|
|
- [docs index](README.md)
|