Files
msd-core/docs/adr/0010-file-operation-engine-module.md
Tom Boucher 67a9243cf1 chore(#2356): make the ADR index a generated artifact and enforce ADR lifecycle invariants (#2367)
* chore: rebuild ADR index as a generated artifact and enforce lifecycle invariants

The ADR index in docs/adr/README.md was hand-maintained with nothing checking
it, and had drifted to 40 of 65 ADRs. The absent rows included the entire
capability family (857/894/959/1016/1143/1213/1244) and ADR-1239 (EoS) itself,
so the decisions a reader most needed were the ones they could not find.

Make the index a derived artifact, matching the repo's existing generated-file
idiom (lint:generated-sync), and enforce the corpus' lifecycle invariants:

- scripts/gen-adr-index.cjs generates the index between markers and validates
  the status vocabulary (Accepted/Proposed/Superseded/Legacy/Retired),
  successor links, id/filename agreement, and supersession symmetry.
- Wire --check into lint:generated-sync so drift fails CI.

Correct the lifecycle metadata the gate surfaced, without flipping any status:

- ADR-1239 (EoS) declared it subsumed ADR-1016/58/3660/894; none recorded it.
  Add reciprocal "Subsumed by" pointers + dated amendments. Subsumption keeps
  the target Accepted -- these are live adapters, not dead decisions.
- ADR-857/894 carry dated status caveats: they read Proposed while the
  capability system shipped and epic #857 is closed. Ratification is a
  maintainer act and is deliberately left open.
- Link ADR-0005/0007/0012/3524 -> ADR-0174 and ADR-0010 -> ADR-0009; record
  the reciprocal Supersedes on ADR-0009.
- ADR-218 declared itself "ADR-0175" -- an unfinished rename.
- The 0011 PRD moves from the non-canonical "Draft" to "Legacy".

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* test: capture stderr via spawnSync; record ADR-0010 draft supersession

Two fixes surfaced by the first gsd-test run and by regenerating the index:

- tests/adr-index-gate.test.cjs used execFileSync, which only surfaces stderr
  through the thrown error on non-zero exit. The `--write` path exits 0 while
  reporting outstanding violations on stderr, so the helper always saw ''.
  spawnSync captures both streams on both outcomes.
- The hand-maintained index recorded 0010-skill-surface-budget-module.md as
  "earlier draft superseded by ADR-0011" while the file itself still said
  Proposed. Deriving the index from the files would have dropped that
  assertion and resurrected a superseded draft as a live decision, so it is
  recorded at its source, with the reciprocal Supersedes on ADR-0011.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix: drop the dead sdk/ model-catalog candidate retired by ADR-0174

src/model-catalog.cts resolved model-catalog.json through three candidates, the
second being sdk/shared/model-catalog.json three levels up. That was the legacy
source-repo fallback kept by the #3288 fix ("check the co-located path FIRST,
before the legacy source-repo path").

ADR-0174 then retired the @opengsd/gsd-sdk package boundary and deleted the sdk/
tree (11918dcc3), so the candidate can no longer resolve in any layout: a source
repo has no sdk/, and an install layout points it at ~/.claude/sdk/shared/, which
the installer never writes -- the original #3288 bug. It was dead weight implying
a package boundary this repo no longer has.

No test depends on it: the #3288 regression tests in tests/install.test.cjs write
their own synthetic old-path fixture and assert it throws.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* docs: ratify nine shipped ADRs; record why ten others stay Proposed

The corpus carried 19 Proposed ADRs, most describing architecture that had
already shipped. A Proposed label on live architecture tells contributors and
agents the decision is an unbuilt idea -- the capability system and EoS were
both being misread that way.

Audited all 19 against the shipped tree and GitHub. Each candidate flip then had
to survive two independent reviewers instructed to refute it.

Ratified Proposed -> Accepted, each with a dated Ratification section carrying
the verified evidence (file:line, symbols, tests, issue state):

  857  capability system      894  declaration format   1244 capability ecosystem
  1577 injection boundary     1610 size-budget ratchet  1990 existing-code onboarding
  15   cross-AI convergence   22   plan-drift guard     0011 default reviewers

Held ten, each now carrying a "Why this is still Proposed" section naming the
blocker and its unblock condition, so the audit is not repeated:

  2264 its own headline acceptance criterion is unmet in the tree
  230  live branch protection contradicts the decided spec (1 approval, not 2)
  660  the namesake release/<version> re-cut is manual, not automated
  959  issue #2346 is approved and plans its graduation as its own ADR
  1213 the shipped writer's return shape differs from the decided interface
  443  the orchestrator override path has no live caller
  1143 / 1606 each states its own bar for acceptance; neither is met
  612 / 1671 legitimately open

Shipped code proved necessary but not sufficient: eight ADRs had every named
module, symbol, and test present with their epics closed, and still failed the
bar. That lesson is written into README.md's ratification procedure.

Also corrected ADR-857's "Supersedes (generalizes)" to "Subsumes": taken
literally it would have marked two live seams dead -- ADR-0011 (surface.cts:348)
and ADR-58 (runtime-artifact-install-plan.cts:82). Both keep Accepted status and
gain Subsumed-by pointers.

Index: Active 39->48, Proposed 19->10, Superseded/Legacy 7. 65 total.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix: harden gen-adr-index against hostile titles and non-ADR filenames (#2356)

Three findings from the pre-PR orthogonal security review, all confirmed:

- An ADR title containing the literal ADR-INDEX:END marker was emitted verbatim
  into its table cell, relocating the splice boundary so the NEXT --write
  spliced against the wrong marker and truncated README.md. Titles now render
  through cellText(), which escapes pipes and angle brackets -- making an HTML
  comment (and any other HTML) unformable from ADR-authored text.
- A docs/adr/*.md without a numeric prefix crashed on match(...)[1] of null.
  Such a file is also invisible to the index -- the very failure this gate
  exists to prevent -- so it is now reported as a naming-convention violation
  naming the file and the fix.
- Tests leaked their mkdtemp dirs. They now use helpers.createTempDir/cleanup
  via t.after(); helpers.cleanup carries the Windows-EBUSY retry budget that a
  raw fs.rmSync lacks (caught by local/no-raw-rmsync-in-tests).

Adds five regression tests: marker hijack, HTML injection, pipe cell-break,
non-conforming filename, and splice stability across repeated writes.

Refs #2356

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix: close two gate false-passes; read ## Supersedes sections (#2356)

Second round of confirmed findings from the pre-PR orthogonal code review. Both
false-passes matter more than a false-fail: a gate that silently misses a
violation is worse than no gate, because it is trusted.

- A relation field mixing a link with a bare id silently dropped the bare claim:
  the check tested `rel.links.length` (does this field have ANY link?) instead
  of whether THAT id was linked. `Supersedes: [ADR-0001](...), ADR-0011` passed
  clean -- accepting exactly the ambiguous bare reference the rule forbids. Now
  each bare id is checked against the ids actually linked in the same field, so
  a repeat in trailing prose stays quiet while an unlinked claim is flagged.
- The ratification guard (`statusToken !== 'Accepted'`) skipped BOTH relation
  directions, which killed the IN check entirely: `supersedes.in` is only ever
  populated on an ADR whose status IS `Superseded`, so a dangling `Superseded by
  X` where X never claims it always passed. The guard now applies to OUT only --
  a prospective claim must not obligate its target, but an ADR's statement about
  ITSELF is always owed a reciprocal.
- Fixing that surfaced a parser gap: ADR-0174 declares its supersessions in a
  `## Supersedes` table SECTION, not a header field, and headerBlock() stops at
  the first `##`. The repo's best-documented supersession was invisible. Section
  form is now parsed for both relations.
- Replaced a vacuous test: the em-dash negation case passed whether or not
  NEGATED_RELATION_RE matched (a mutation to /$^/ survived). It now carries a
  link that would create a failing asymmetric relation if negation did not fire.

Also removes docs/adr/9401-test-target.md -- a synthetic fixture a reviewer
created in the worktree while reproducing a finding, swept in by `git add -A`.

Adds regression tests for each: mixed link+bare, linked-and-repeated-in-prose,
dangling superseded-by from a non-Accepted ADR, and the ADR-0174 section shape.

Refs #2356

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* fix: escape backslashes before pipes in the ADR index cell renderer (#2356)

CodeQL js/incomplete-sanitization (high) on scripts/gen-adr-index.cjs: cellText()
escaped `|` -> `\|` without first escaping the backslash. Markdown's escape
character is the backslash, so the input `\|` became `\\|`, which renders as a
literal backslash followed by an UNESCAPED pipe -- re-opening the cell break the
pipe escape exists to prevent. Order is load-bearing: escape the escape
character first, then everything that emits one.

Same class as the index-marker hijack fixed earlier: ADR-authored text breaking
out of the cell it is rendered into.

Adds a regression test asserting a `\|`-bearing title leaves exactly the row's
own 5 unescaped delimiters and cannot forge a Status cell. Uses split(/\r?\n/)
per local/no-crlf-fragile-split -- a literal "\n" split is CRLF-fragile on the
Windows CI leg.

Refs #2356

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-17 10:51:58 -04:00

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# File Operation Engine Module owns safe runtime/config file mutations
- **Status:** Superseded by [ADR-0009](0009-shell-command-projection-module.md) (Shell Command Projection Module expansion, Phases 3–4, `#3467`–`#3468`)
- **Date:** 2026-05-12
- **Superseded:** 2026-05-13
> **Supersession note.** Rather than build a separate File Operation Engine, the file-mutation safety policy this ADR proposed was absorbed into the **Shell Command Projection Module** (ADR-0009). Phase 3 (`#3467`) added `platformWriteSync` / `platformReadSync` / `platformEnsureDir` / `normalizeContent` to that seam, owning atomic write (tmp+rename), `.md` normalization, and directory creation as a single platform-conditional surface. Phase 4 (`#3468`) removed the duplicated `atomicWriteFileSync` / `safeReadFile` / `normalizeMd` wrappers from `core.cjs`. The `applyFileMutationPlan` / typed plan IR design proposed below was not built — the simpler per-call seam proved sufficient for the actual drift sites. Lock-file lifecycle (Track B item 3) remains owned by `withPlanningLock` in `planning-workspace.cjs` because its `{ flag: 'wx' }` exclusive-create semantics differ from atomic-write rename semantics.
---
We propose introducing a File Operation Engine Module that owns policy for managed file reads, writes, deletes, locks, backups, and rollbacks across installer, migration, and planning surfaces. Today, file mutation behavior is duplicated across `bin/install.js`, `gsd-core/bin/lib/installer-migrations.cjs`, and multiple planning modules, with drift in atomic-write guarantees, path safety checks, and ownership classification.
This ADR also captures where Shell Command Projection Module policy should be consumed or expanded for hook-command-specific file mutations, so shell command drift and file mutation drift do not evolve as separate bug classes.
## Decision
- Add a **File Operation Engine Module** under `gsd-core/bin/lib/` as the single seam for file mutation safety policy.
- Keep command-text projection in the Shell Command Projection Module (ADR-0009), but route projection-adjacent hook file mutations through shared managed-hook ownership policy.
- Move file operation adapters to the new seam in two tracks:
- **Track A (projection-adjacent):** runtime config hook-command detection/rewrite/delete paths consume shared managed-hook policy from the projection seam.
- **Track B (solution-wide):** shared file operation engine owns atomic write, path containment, lock behavior, rollback bookkeeping, and best-effort cleanup policy.
- Keep internal subprocess execution out of this seam (same boundary as ADR-0009): this is a file operation seam, not a command runner.
## Initial Scope
1. Unify managed-hook ownership classification used by install/uninstall/migration hook config rewrites.
2. Unify atomic write behavior currently duplicated in installer/core/migration paths.
3. Unify lock-file lifecycle policy used by planning workspace and installer migration journal flows.
4. Expose typed file mutation plan IR for tests (`rewrite-json`, `rewrite-text` with format (`toml`/`markdown`/`plain`), `delete-file`, `backup-file`, `restore-file`, `ensure-dir`).
## Migration Inventory
### Projection-adjacent file mutation drift (Track A)
- `bin/install.js`
- hook cleanup command detection (`isGsdHookCommand`)
- stale Codex hook strip basenames (`STALE_HOOK_BASENAMES`)
- settings/config hook entry prune/rewrite paths
- `gsd-core/bin/lib/installer-migrations/002-codex-legacy-hooks-json.cjs`
- `isManagedCodexHookCommand` regex/path detection duplicated from installer-owned hook policy
- `gsd-core/bin/lib/shell-command-projection.cjs`
- `isManagedHookBasename` already owns part of this policy and should become the canonical owner
### Solution-wide file operation drift (Track B)
- `bin/install.js`
- local `atomicWriteFileSync` and temp cleanup registry
- large inlined read/modify/write + backup/rollback logic for runtime config and hooks
- `gsd-core/bin/lib/core.cjs`
- `atomicWriteFileSync` helper diverges in fallback behavior from installer/migration variants
- `gsd-core/bin/lib/installer-migrations.cjs`
- separate `writeFileAtomicSync`, rollback journaling, lock handling, and containment checks
- `gsd-core/bin/lib/planning-workspace.cjs` and `gsd-core/bin/lib/state.cjs`
- duplicated lock-file create/release/remove patterns and best-effort cleanup semantics
- `gsd-core/bin/lib/roadmap.cjs`, `phase.cjs`, `milestone.cjs`, `frontmatter.cjs`, `drift.cjs`
- direct read/modify/write flows with inconsistent atomicity and normalization policy application
## Interface sketch
The File Operation Engine Module should expose typed mutation planning and execution helpers:
```js
planFileMutations({
rootDir,
operations: [
{ type: 'rewrite-json', relPath, mutate },
{ type: 'rewrite-text', relPath, mutate, format: 'toml' | 'markdown' | 'plain' },
{ type: 'delete-file', relPath },
{ type: 'ensure-dir', relPath },
],
ownership: { mode: 'managed-only' | 'allow-user', classifier },
})
```
```js
applyFileMutationPlan({
plan,
atomic: true,
rollback: true,
lock: { scope: 'config' | 'planning', id: '...' },
})
```
For projection-adjacent paths, adapters should consume projection policy:
```js
isManagedHookCommand(commandText, { surface, configDir })
```
## Consequences
- File mutation safety policy becomes local to one module, reducing drift across installer/migration/planning paths.
- Shell command projection and hook ownership classification stay aligned at one seam family.
- Tests can assert typed mutation IR and reason codes instead of source-grep and duplicated predicate mirrors.
- Initial migration is broad; sequencing should prioritize projection-adjacent hook config paths first, then converge atomic-write and lock semantics.
## Open questions
- Whether lock semantics should be one shared policy for installer + planning, or two adapters over one lock primitive.
- Whether SDK query write paths should consume the same engine in the first pass or follow after CJS convergence.
- Whether file mutation telemetry (per-op reason codes and rollback events) should be required for all engine adapters.
## References
- ADR-0008: `0008-installer-migration-module.md`
- ADR-0009: `0009-shell-command-projection-module.md`
- Related bug history: `#1755`, `#2866`, `#2979`, `#3002`, `#3017`, `#3439`